Rh4BG365100

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001120
Physical Location & Seq
Forward (+)
52265138 .. 52270149
5012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG365100.1

Sequence Viewer

Length: 585 bp
ATGTCACTACCTCAAATCCCTTCTTCTCTTCCCCAACACTCGCAACAATTTGAGCTCAGCCAAGAAACCAGAGACCTAATATCCACGCTTCCTGCTGAGAAAGGATTGATTTCAGGTCATTTACATCAGTACCAGGGCTTTTGGTACCCCACTATGCATATCCAAAAAGTTTTAGCCTCCCAAAAACACTTTCAAGCTCAAGATACTGATATCCTTCTCGCTACTACTCCCAAATCAGGCACCACTTGGCTCAAGGCAATTCTGTTTGCGCTAGTAAAGCGAGTGCACTATCATCCAGACCCACAAAACATGGACCACCCTTTGCTCACAAACAACCCTCATGTTCTTGTGCCCTTCTTGGAGAATAAGCATTCCGGTAAGAACCAGATTCCTGACCCCACCTCTTATGCTCCTCCCAGGCTCTTTTCAACTCACTTACCACTAGCGCATCTGCCACAATCTGTTAAAGACTGTGCTTGCAAGGATGGCATACCTAAATATCCAACTACTTGTGCAGTGGAGTGGGTTGATGCAGAGGATCTACTTTTTGTGCTCTATATCAGTGGGAGCACTGGGAAGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

194

Amino Acids

21.76

Weight (kDa)

6.86

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 68 - 161 6.2e-19 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 2 cut(s) 144, 239
AclWI GGATC 1 cut(s) 546
AfaI GTAC 2 cut(s) 131, 146
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 2 cut(s) 194, 429
AjnI CCWGG 2 cut(s) 132, 416
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 2 cut(s) 55, 197
AluI AGCT 2 cut(s) 55, 197
Alw21I GWGCWC 4 cut(s) 57, 288, 555, 572
Alw26I GTCTC 1 cut(s) 66
Alw44I GTGCAC 1 cut(s) 284
AlwI GGATC 1 cut(s) 546
ApaLI GTGCAC 1 cut(s) 284
Asp718I GGTACC 1 cut(s) 144
AspLEI GCGC 2 cut(s) 271, 448
AspS9I GGNCC 1 cut(s) 313
AvaII GGWCC 1 cut(s) 313
BaeGI GKGCMC 2 cut(s) 288, 354
BaeI ACNNNNGTAYC 2 cut(s) 113, 146
BanI GGYRCC 2 cut(s) 144, 239
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 4 cut(s) 57, 288, 555, 572
BccI CCATC 1 cut(s) 479
BciT130I CCWGG 2 cut(s) 134, 418
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 3 cut(s) 272, 443, 583
BlpI GCTNAGC 1 cut(s) 56
Bme1390I CCNGG 2 cut(s) 134, 418
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 146, 241
BmrFI CCNGG 2 cut(s) 134, 418
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 2 cut(s) 457, 520
BmuI ACTGGG 1 cut(s) 582
Bpu1102I GCTNAGC 1 cut(s) 56
BpuEI CTTGAG 2 cut(s) 183, 236
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 133, 416
BsaWI WCCGGW 1 cut(s) 374
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 577
BseBI CCWGG 2 cut(s) 134, 418
BseDI CCNNGG 2 cut(s) 133, 416
BseGI GGATG 2 cut(s) 292, 490
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 2 cut(s) 70, 87
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 1 cut(s) 402
BseSI GKGCMC 2 cut(s) 288, 354
BsgI GTGCAG 1 cut(s) 534
BshNI GGYRCC 2 cut(s) 144, 239
BsiHKAI GWGCWC 4 cut(s) 57, 288, 555, 572
BsiSI CCGG 1 cut(s) 375
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 66
BsmI GAATGC 1 cut(s) 370
Bso31I GGTCTC 1 cut(s) 66
Bsp1286I GDGCHC 5 cut(s) 57, 288, 354, 555, 572
Bsp143I GATC 1 cut(s) 538
Bsp1720I GCTNAGC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 69, 88
BspLI GGNNCC 2 cut(s) 146, 241
BspPI GGATC 1 cut(s) 546
BspT107I GGYRCC 2 cut(s) 144, 239
BspTNI GGTCTC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 577
BssECI CCNNGG 2 cut(s) 133, 416
BssMI GATC 1 cut(s) 538
Bst2UI CCWGG 2 cut(s) 134, 418
Bst4CI ACNGT 1 cut(s) 473
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 2 cut(s) 56, 96
BstF5I GGATG 2 cut(s) 292, 490
BstHHI GCGC 2 cut(s) 271, 448
BstKTI GATC 1 cut(s) 541
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 1 cut(s) 538
BstMWI GCNNNNNNNGC 2 cut(s) 277, 486
BstNI CCWGG 2 cut(s) 134, 418
BstSCI CCNGG 2 cut(s) 132, 416
BstSLI GKGCMC 2 cut(s) 288, 354
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BtsCI GGATG 2 cut(s) 292, 490
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 3 cut(s) 522, 568, 570
Cac8I GCNNGC 1 cut(s) 478
CfoI GCGC 2 cut(s) 271, 448
Cfr13I GGNCC 1 cut(s) 313
Csp6I GTAC 2 cut(s) 130, 145
CviAII CATG 2 cut(s) 310, 341
CviJI RGCY 8 cut(s) 55, 60, 138, 176, 197, 250, 421, 580
CviKI_1 RGCY 8 cut(s) 55, 60, 138, 176, 197, 250, 421, 580
CviQI GTAC 2 cut(s) 130, 145
DdeI CTNAG 2 cut(s) 56, 96
DpnI GATC 1 cut(s) 540
DpnII GATC 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 132, 416
EcoRV GATATC 1 cut(s) 211
EcoT22I ATGCAT 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 2 cut(s) 313, 344
FaiI YATR 7 cut(s) 155, 159, 311, 342, 408, 491, 558
FatI CATG 2 cut(s) 309, 340
FokI GGATG 2 cut(s) 279, 497
FriOI GRGCYC 1 cut(s) 57
FspBI CTAG 3 cut(s) 272, 443, 583
GlaI GCGC 2 cut(s) 270, 447
HapII CCGG 1 cut(s) 375
HhaI GCGC 2 cut(s) 271, 448
Hin1II CATG 2 cut(s) 313, 344
Hin6I GCGC 2 cut(s) 269, 446
HinP1I GCGC 2 cut(s) 269, 446
HinfI GANTC 1 cut(s) 388
HpaII CCGG 1 cut(s) 375
Hpy166II GTNNAC 1 cut(s) 286
Hpy188III TCNNGA 3 cut(s) 200, 296, 392
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 3 cut(s) 30, 224, 364
HpyCH4III ACNGT 1 cut(s) 473
HpyCH4V TGCA 5 cut(s) 157, 286, 480, 515, 533
HpyF10VI GCNNNNNNNGC 2 cut(s) 277, 486
HpyF3I CTNAG 2 cut(s) 56, 96
Hsp92II CATG 2 cut(s) 313, 344
HspAI GCGC 2 cut(s) 269, 446
KpnI GGTACC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 538
LmnI GCTCC 2 cut(s) 415, 567
LweI GCATC 2 cut(s) 457, 520
MaeI CTAG 3 cut(s) 272, 443, 583
MaeIII GTNAC 1 cut(s) 3
MalI GATC 1 cut(s) 540
MboI GATC 1 cut(s) 538
MboII GAAGA 2 cut(s) 15, 20
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 5 cut(s) 57, 288, 354, 555, 572
MluCI AATT 2 cut(s) 47, 258
MmeI TCCRAC 1 cut(s) 527
MnlI CCTC 6 cut(s) 21, 187, 348, 412, 423, 529
Mph1103I ATGCAT 1 cut(s) 159
MseI TTAA 1 cut(s) 465
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 2 cut(s) 134, 418
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 2 cut(s) 134, 418
MwoI GCNNNNNNNGC 2 cut(s) 277, 486
NdeII GATC 1 cut(s) 538
NlaIII CATG 2 cut(s) 313, 344
NlaIV GGNNCC 2 cut(s) 146, 241
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 159
PctI GAATGC 1 cut(s) 370
PfeI GAWTC 1 cut(s) 388
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 132, 416
PspGI CCWGG 2 cut(s) 132, 416
PspN4I GGNNCC 2 cut(s) 146, 241
PspPI GGNCC 1 cut(s) 313
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 2 cut(s) 131, 146
RsaNI GTAC 2 cut(s) 130, 145
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 465
Sau3AI GATC 1 cut(s) 538
Sau96I GGNCC 1 cut(s) 313
ScrFI CCNGG 2 cut(s) 134, 418
SduI GDGCHC 5 cut(s) 57, 288, 354, 555, 572
SetI ASST 7 cut(s) 13, 57, 78, 118, 199, 404, 496
SfaNI GCATC 2 cut(s) 457, 520
SinI GGWCC 1 cut(s) 313
SmlI CTYRAG 2 cut(s) 198, 251
SmoI CTYRAG 2 cut(s) 198, 251
Sse9I AATT 2 cut(s) 47, 258
SspMI CTAG 3 cut(s) 272, 443, 583
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 132, 416
TaaI ACNGT 1 cut(s) 473
TasI AATT 2 cut(s) 47, 258
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 3 cut(s) 522, 568, 577
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspRI CASTG 3 cut(s) 522, 568, 577
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 313
XspI CTAG 3 cut(s) 272, 443, 583
Zsp2I ATGCAT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.