Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001120

Physical Location & Seq

Genomic Coordinates Forward (+)

57952952 .. 57953950

Gene Structure 999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG359100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGACCACCCTTTGCTCACAAACAACCCTCATGTTCTTGTGCCCTTGTTGGAGAATAAGCATTCCGGTAAGAACCAGATTCCTGACTCCACCTCTTATGCTCCTCCCAGGCTCTTTTCAACTCACTTACCACTAGCGCATCTGCCACAATCTGTTAAAGACTCTGCTTGCAAGGGGAGTGAGTGGGTATGGACCCTTTTGGGATATCATATGTTGGGCTATTGGAAGGAAAGCTTGGAAGGGCCTGAAACGGTGTTCTTCCTCAAATATGAGGAAATGAAAGAAAAACCTGGTCTGCAGTTGAGGAGACTAGCTGAGTTCTTGGGGTGCCCATTTTCACCGAAAGAAGAGGCACAGGGAGTGGTGGACAATATCTTAAGGCTGTGTAGTTTTGAGAATTTGAGCAATTTGGATGTGAACAAAAATGAGAAATTATCGACAGGGATGGAGAATAGTGCATTCTTTCGGCGAGGGGAAGCGGGAGACTGGAGGAATTATTTGACAGCTGAGATGGTGGAACAGCTAGACCGTATCATTGAAGAGAAGTTGCAAGGTTCTGACTTGAAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

190

Amino Acids

21.75

Weight (kDa)

5.55

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	2 - 58	3.2e-06	Sulfotransferase domain
Sulfotransfer_1	PF00685	69 - 186	1.8e-31	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28170 AT2G03760 AT2G27570 AT3G45070 AT3G45070 AT3G45070 AT3G45080 AT5G43690
fragaria_vesca	FvH4_4g29330 FvH4_4g29331 FvH4_4g29332 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29751
malus_domestica	MD16G1055600.v1.1 MD16G1055700.v1.1 MD16G1055800.v1.1 MD16G1056100.v1.1
prunus_persica	Prupe.1G293200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437381 RchiOBHm_Chr4g0437391 RchiOBHm_Chr7g0233341
rosa_laevigata	RLG00000006442 RLG00000013880
rosa_multiflora	Rmu_sc0004759.1_g000009 Rmu_sc0004759.1_g000010 Rmu_sc0010228.1_g000003 Rmu_sc0010228.1_g000005
rosa_roxburghii	Rroxscaffold_3G00227360 Rroxscaffold_5G00378530 Rroxscaffold_5G00378560 Rroxscaffold_5G00378630
rosa_rugosa	Rorug04G0300400 Rorug04G0300500 Rorug04G0300600 Rorug04G0301000
rosa_samantha	Rh4AG355300 Rh4BG365000 Rh4BG365100 Rh4BG365400 Rh4BG365500 Rh4CG379200 Rh4CG379300 Rh4CG379600 Rh4CG379700 Rh4DG359000 Rh4DG359100 Rh4DG359300 Rh5DG503800 Rh7CG455200
rosa_wichuraiana	Rw0G022450 Rw4G031140 Rw4G031170 Rw4G031180 Rw7G035860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	327
AciI	CCGC	1 cut(s)	479
AcsI	RAATTY	2 cut(s)	397, 566
AflII	CTTAAG	1 cut(s)	376
AgsI	TTSAA	3 cut(s)	120, 539, 565
AjnI	CCWGG	2 cut(s)	107, 289
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	4 cut(s)	234, 314, 506, 523
AluI	AGCT	4 cut(s)	234, 314, 506, 523
Alw26I	GTCTC	2 cut(s)	301, 477
AoxI	GGCC	1 cut(s)	242
ApoI	RAATTY	2 cut(s)	397, 566
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	3 cut(s)	4, 192, 242
AsuHPI	GGTGA	1 cut(s)	330
AvaII	GGWCC	2 cut(s)	4, 192
BaeGI	GKGCMC	2 cut(s)	45, 332
BanI	GGYRCC	1 cut(s)	327
BccI	CCATC	2 cut(s)	439, 505
BciT130I	CCWGG	2 cut(s)	109, 291
BcoDI	GTCTC	2 cut(s)	301, 477
BfaI	CTAG	3 cut(s)	134, 311, 524
BfmI	CTRYAG	1 cut(s)	296
BfrI	CTTAAG	1 cut(s)	376
Bme1390I	CCNGG	2 cut(s)	109, 291
Bme18I	GGWCC	2 cut(s)	4, 192
BmgT120I	GGNCC	3 cut(s)	4, 192, 242
BmiI	GGNNCC	2 cut(s)	194, 329
BmrFI	CCNGG	2 cut(s)	109, 291
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	508
BsaJI	CCNNGG	1 cut(s)	107
BsaWI	WCCGGW	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	491
BseBI	CCWGG	2 cut(s)	109, 291
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	2 cut(s)	418, 450
BseMII	CTCAG	2 cut(s)	306, 498
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	2 cut(s)	93, 319
BseSI	GKGCMC	2 cut(s)	45, 332
BshFI	GGCC	1 cut(s)	244
BshNI	GGYRCC	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	301, 477
BsmI	GAATGC	2 cut(s)	61, 458
BsnI	GGCC	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	45, 332
BspACI	CCGC	1 cut(s)	479
BspANI	GGCC	1 cut(s)	244
BspCNI	CTCAG	2 cut(s)	307, 499
BspLI	GGNNCC	2 cut(s)	194, 329
BspMAI	CTGCAG	1 cut(s)	300
BspT107I	GGYRCC	1 cut(s)	327
BspTI	CTTAAG	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	107
Bst2UI	CCWGG	2 cut(s)	109, 291
Bst4CI	ACNGT	2 cut(s)	253, 530
Bst6I	CTCTTC	2 cut(s)	342, 534
BstAFI	CTTAAG	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	2 cut(s)	315, 507
BstF5I	GGATG	2 cut(s)	418, 450
BstHHI	GCGC	1 cut(s)	139
BstMAI	GTCTC	2 cut(s)	301, 477
BstNI	CCWGG	2 cut(s)	109, 291
BstSCI	CCNGG	2 cut(s)	107, 289
BstSFI	CTRYAG	1 cut(s)	296
BstSLI	GKGCMC	2 cut(s)	45, 332
BsuRI	GGCC	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	418, 450
Cac8I	GCNNGC	1 cut(s)	169
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	3 cut(s)	4, 192, 242
CsiI	ACCWGGT	1 cut(s)	289
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	8 cut(s)	112, 219, 234, 244, 314, 382, 506, 523
CviKI_1	RGCY	8 cut(s)	112, 219, 234, 244, 314, 382, 506, 523
DdeI	CTNAG	2 cut(s)	315, 507
Eam1104I	CTCTTC	2 cut(s)	342, 534
EarI	CTCTTC	2 cut(s)	342, 534
Eco32I	GATATC	1 cut(s)	206
Eco47I	GGWCC	2 cut(s)	4, 192
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	107, 289
EcoRV	GATATC	1 cut(s)	206
FaeI	CATG	1 cut(s)	35
FaiI	YATR	6 cut(s)	33, 99, 190, 210, 212, 270
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FatI	CATG	1 cut(s)	31
FauI	CCCGC	1 cut(s)	472
FauNDI	CATATG	1 cut(s)	210
FokI	GGATG	2 cut(s)	425, 457
FspBI	CTAG	3 cut(s)	134, 311, 524
GlaI	GCGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	508
HaeIII	GGCC	1 cut(s)	244
HapII	CCGG	1 cut(s)	66
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	3 cut(s)	79, 86, 161
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	330
Hpy166II	GTNNAC	2 cut(s)	367, 418
Hpy188I	TCNGA	1 cut(s)	559
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	2 cut(s)	367, 418
HpyAV	CCTTC	2 cut(s)	220, 233
HpyCH4III	ACNGT	2 cut(s)	253, 530
HpyCH4V	TGCA	4 cut(s)	171, 298, 458, 550
HpyF3I	CTNAG	2 cut(s)	315, 507
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	106
LweI	GCATC	1 cut(s)	148
MabI	ACCWGGT	1 cut(s)	289
MaeI	CTAG	3 cut(s)	134, 311, 524
MboII	GAAGA	3 cut(s)	250, 359, 551
MhlI	GDGCHC	2 cut(s)	45, 332
MluCI	AATT	5 cut(s)	397, 406, 431, 493, 566
MlyI	GAGTC	2 cut(s)	80, 155
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	9 cut(s)	39, 103, 114, 265, 272, 297, 343, 464, 483
MseI	TTAA	2 cut(s)	156, 377
MspA1I	CMGCKG	1 cut(s)	506
MspCI	CTTAAG	1 cut(s)	376
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	109, 291
Mva1269I	GAATGC	2 cut(s)	61, 458
MvaI	CCWGG	2 cut(s)	109, 291
NdeI	CATATG	1 cut(s)	210
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	2 cut(s)	194, 329
PctI	GAATGC	2 cut(s)	61, 458
PfeI	GAWTC	1 cut(s)	79
PleI	GAGTC	2 cut(s)	80, 155
PpsI	GAGTC	2 cut(s)	80, 155
Psp6I	CCWGG	2 cut(s)	107, 289
PspGI	CCWGG	2 cut(s)	107, 289
PspN4I	GGNNCC	2 cut(s)	194, 329
PspPI	GGNCC	3 cut(s)	4, 192, 242
PstI	CTGCAG	1 cut(s)	300
PvuII	CAGCTG	1 cut(s)	506
SaqAI	TTAA	2 cut(s)	156, 377
Sau96I	GGNCC	3 cut(s)	4, 192, 242
SchI	GAGTC	2 cut(s)	80, 155
ScrFI	CCNGG	2 cut(s)	109, 291
SduI	GDGCHC	2 cut(s)	45, 332
SetI	ASST	7 cut(s)	95, 236, 292, 316, 508, 525, 556
SexAI	ACCWGGT	1 cut(s)	289
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	296
SinI	GGWCC	2 cut(s)	4, 192
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	5 cut(s)	397, 406, 431, 493, 566
SsiI	CCGC	1 cut(s)	479
SspMI	CTAG	3 cut(s)	134, 311, 524
StyD4I	CCNGG	2 cut(s)	107, 289
TaaI	ACNGT	2 cut(s)	253, 530
TaqI	TCGA	1 cut(s)	437
TasI	AATT	5 cut(s)	397, 406, 431, 493, 566
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	2 cut(s)	156, 377
Tru9I	TTAA	2 cut(s)	156, 377
TspDTI	ATGAA	1 cut(s)	293
Vha464I	CTTAAG	1 cut(s)	376
VpaK11BI	GGWCC	2 cut(s)	4, 192
XapI	RAATTY	2 cut(s)	397, 566
XspI	CTAG	3 cut(s)	134, 311, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.