Rw4G031180

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001120
Physical Location & Seq
Forward (+)
58024236 .. 58036217
11982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G031180.1

Sequence Viewer

Length: 879 bp
ATGTCACCATCTCAAATTCCTTCTTCTCTTCCCCAACACTCGCAACAATTTGAGCTCAGCCAAGAAACCAGAGACCTAATATCCACGCTTCCTGCTGAGAAAGGATTGATTTCAGGTCATTTACATCAGTACCAGGGCTTTTGGTACCCCACTATGCATATCCAAAAAGTTTTAGCCTCCCAAAAACACTTTCAAGCTCAAGATACTGATATCCTTCTCGCTACTACTCCCAAATCAGGCACCACTTGGCTCAAGGCAATTCTGTTTGCGCTAGTAAAGCGAGTGCACTATCATCCAGACCCACAAAACATGGACCACCCTTTGCTCACAAACAACCCTCATGTTCTTGTGCTCTTTTCAACTCACTTACCACTAGCGCATCTGCCACAATACTCTGCTTGCAAGGTTGTCTATCTATGTAGAAACCCTAAGGACATAATAAAAACCTTCCACAATTCTCTTGCTTGTTTTTCTTCAGGAACCAATTCACTTGAAGAAGTTTTCGAATACTTCTGCAGGGGAGTGAGTGGGTATGGACCCTTTTGGGATCATGCGTTGGGCTATTGGAAGGAAAGCCTGGAAGGGCCTGAAACGGTGTTCTTCCTCAAATATGAGGAAATGAAAGAAAAACCTGGTCTGCAGTTGAGGAGACTAACTGAATTCTTGGGCTGCCCATTTTCACCGAAAGAAGAGGCACAGGGAAATTTGAGCAATTTGCATGTGAACAAAAATGAGAAATTATCAACAGGGATGGAGAATAGTGCATTCTTTTGGCGAGGGGAGGCGGGGGACTGGAGGAATTATTTGACAGCTGAGATGGTGGAACAGCTAGACCGTATCATTGAAGAGAAGTTGCAAGGTTCTGACTTGAAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

292

Amino Acids

33.47

Weight (kDa)

6.27

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 68 - 116 3.9e-08 Sulfotransferase domain
Sulfotransfer_1 PF00685 116 - 288 6.7e-41 Sulfotransferase domain
Sulfotransfer_3 PF13469 135 - 227 5.3e-06 Sulfotransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 2 cut(s) 144, 239
AciI CCGC 1 cut(s) 785
AclWI GGATC 1 cut(s) 555
AcsI RAATTY 4 cut(s) 15, 659, 703, 872
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 2 cut(s) 131, 146
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 5 cut(s) 194, 360, 494, 845, 871
AjnI CCWGG 3 cut(s) 132, 576, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 4 cut(s) 55, 197, 812, 829
AluI AGCT 4 cut(s) 55, 197, 812, 829
Alw21I GWGCWC 3 cut(s) 57, 288, 354
Alw26I GTCTC 2 cut(s) 66, 643
Alw44I GTGCAC 1 cut(s) 284
AlwI GGATC 1 cut(s) 555
AoxI GGCC 1 cut(s) 584
ApaLI GTGCAC 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 669
ApoI RAATTY 4 cut(s) 15, 659, 703, 872
Asp700I GAANNNNTTC 1 cut(s) 484
Asp718I GGTACC 1 cut(s) 144
AspLEI GCGC 2 cut(s) 271, 379
AspS9I GGNCC 3 cut(s) 313, 536, 584
AsuHPI GGTGA 1 cut(s) 672
AsuII TTCGAA 1 cut(s) 504
AvaII GGWCC 2 cut(s) 313, 536
AxyI CCTNAGG 1 cut(s) 429
BaeGI GKGCMC 1 cut(s) 288
BaeI ACNNNNGTAYC 2 cut(s) 113, 146
BanI GGYRCC 2 cut(s) 144, 239
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 3 cut(s) 57, 288, 354
BbvI GCAGC 1 cut(s) 656
BccI CCATC 3 cut(s) 16, 745, 811
BciT130I CCWGG 3 cut(s) 134, 578, 633
BcoDI GTCTC 2 cut(s) 66, 643
BfaI CTAG 3 cut(s) 272, 374, 830
BfmI CTRYAG 2 cut(s) 514, 638
BisI GCNGC 1 cut(s) 670
BlpI GCTNAGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 671
Bme1390I CCNGG 3 cut(s) 134, 578, 633
Bme18I GGWCC 2 cut(s) 313, 536
BmgT120I GGNCC 3 cut(s) 313, 536, 584
BmiI GGNNCC 4 cut(s) 146, 241, 481, 538
BmrFI CCNGG 3 cut(s) 134, 578, 633
BmsI GCATC 1 cut(s) 388
BpmI CTGGAG 1 cut(s) 814
Bpu1102I GCTNAGC 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 504
BpuEI CTTGAG 2 cut(s) 183, 236
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 797
Bse21I CCTNAGG 1 cut(s) 429
BseBI CCWGG 3 cut(s) 134, 578, 633
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 2 cut(s) 292, 756
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 3 cut(s) 70, 87, 804
BseNI ACTGG 1 cut(s) 797
BseRI GAGGAG 1 cut(s) 661
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 1 cut(s) 656
BshFI GGCC 1 cut(s) 586
BshNI GGYRCC 2 cut(s) 144, 239
BsiHKAI GWGCWC 3 cut(s) 57, 288, 354
BslFI GGGAC 1 cut(s) 803
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 2 cut(s) 66, 643
BsmFI GGGAC 1 cut(s) 803
BsmI GAATGC 1 cut(s) 764
BsnI GGCC 1 cut(s) 586
Bso31I GGTCTC 1 cut(s) 66
Bsp119I TTCGAA 1 cut(s) 504
Bsp1286I GDGCHC 3 cut(s) 57, 288, 354
Bsp143I GATC 1 cut(s) 547
Bsp1720I GCTNAGC 1 cut(s) 56
BspACI CCGC 1 cut(s) 785
BspANI GGCC 1 cut(s) 586
BspCNI CTCAG 3 cut(s) 69, 88, 805
BspLI GGNNCC 4 cut(s) 146, 241, 481, 538
BspMAI CTGCAG 2 cut(s) 518, 642
BspPI GGATC 1 cut(s) 555
BspT104I TTCGAA 1 cut(s) 504
BspT107I GGYRCC 2 cut(s) 144, 239
BspTNI GGTCTC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 797
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 547
Bst2UI CCWGG 3 cut(s) 134, 578, 633
Bst4CI ACNGT 2 cut(s) 595, 836
Bst6I CTCTTC 3 cut(s) 33, 684, 840
BstBI TTCGAA 1 cut(s) 504
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 4 cut(s) 56, 96, 429, 813
BstF5I GGATG 2 cut(s) 292, 756
BstHHI GCGC 2 cut(s) 271, 379
BstKTI GATC 1 cut(s) 550
BstMAI GTCTC 2 cut(s) 66, 643
BstMBI GATC 1 cut(s) 547
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstNI CCWGG 3 cut(s) 134, 578, 633
BstNSI RCATGY 1 cut(s) 722
BstSCI CCNGG 3 cut(s) 132, 576, 631
BstSFI CTRYAG 2 cut(s) 514, 638
BstSLI GKGCMC 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 656
Bsu36I CCTNAGG 1 cut(s) 429
BsuRI GGCC 1 cut(s) 586
BtsCI GGATG 2 cut(s) 292, 756
Cac8I GCNNGC 1 cut(s) 400
CfoI GCGC 2 cut(s) 271, 379
Cfr13I GGNCC 3 cut(s) 313, 536, 584
CsiI ACCWGGT 1 cut(s) 631
Csp6I GTAC 2 cut(s) 130, 145
CviAII CATG 4 cut(s) 310, 341, 551, 719
CviQI GTAC 2 cut(s) 130, 145
DdeI CTNAG 4 cut(s) 56, 96, 429, 813
DpnI GATC 1 cut(s) 549
DpnII GATC 1 cut(s) 547
Eam1104I CTCTTC 3 cut(s) 33, 684, 840
EarI CTCTTC 3 cut(s) 33, 684, 840
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 2 cut(s) 313, 536
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 459
Eco81I CCTNAGG 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 584
EcoRI GAATTC 1 cut(s) 659
EcoRII CCWGG 3 cut(s) 132, 576, 631
EcoRV GATATC 1 cut(s) 211
EcoT22I ATGCAT 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 4 cut(s) 313, 344, 554, 722
FaqI GGGAC 1 cut(s) 803
FatI CATG 4 cut(s) 309, 340, 550, 718
FauI CCCGC 1 cut(s) 778
Fnu4HI GCNGC 1 cut(s) 670
FokI GGATG 2 cut(s) 279, 763
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 670
FspBI CTAG 3 cut(s) 272, 374, 830
GlaI GCGC 2 cut(s) 270, 378
GluI GCNGC 1 cut(s) 670
GsuI CTGGAG 1 cut(s) 814
HaeIII GGCC 1 cut(s) 586
HhaI GCGC 2 cut(s) 271, 379
Hin1II CATG 4 cut(s) 313, 344, 554, 722
Hin6I GCGC 2 cut(s) 269, 377
HinP1I GCGC 2 cut(s) 269, 377
HphI GGTGA 1 cut(s) 672
Hpy166II GTNNAC 2 cut(s) 286, 724
Hpy188I TCNGA 1 cut(s) 865
Hpy188III TCNNGA 3 cut(s) 200, 296, 477
Hpy8I GTNNAC 2 cut(s) 286, 724
HpyAV CCTTC 5 cut(s) 30, 224, 457, 562, 575
HpyCH4III ACNGT 2 cut(s) 595, 836
HpyCH4V TGCA 8 cut(s) 157, 286, 402, 516, 640, 718, 764, 856
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 4 cut(s) 56, 96, 429, 813
Hsp92II CATG 4 cut(s) 313, 344, 554, 722
HspAI GCGC 2 cut(s) 269, 377
KpnI GGTACC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 547
Lsp1109I GCAGC 1 cut(s) 656
LweI GCATC 1 cut(s) 388
MabI ACCWGGT 1 cut(s) 631
MaeI CTAG 3 cut(s) 272, 374, 830
MaeIII GTNAC 1 cut(s) 3
MalI GATC 1 cut(s) 549
MboI GATC 1 cut(s) 547
MboII GAAGA 7 cut(s) 15, 20, 465, 506, 592, 701, 857
MhlI GDGCHC 3 cut(s) 57, 288, 354
MnlI CCTC 9 cut(s) 187, 348, 607, 614, 639, 685, 770, 775, 789
Mph1103I ATGCAT 1 cut(s) 159
MroXI GAANNNNTTC 1 cut(s) 484
MspA1I CMGCKG 1 cut(s) 812
MspR9I CCNGG 3 cut(s) 134, 578, 633
Mva1269I GAATGC 1 cut(s) 764
MvaI CCWGG 3 cut(s) 134, 578, 633
MwoI GCNNNNNNNGC 1 cut(s) 277
NdeII GATC 1 cut(s) 547
NlaIII CATG 4 cut(s) 313, 344, 554, 722
NlaIV GGNNCC 4 cut(s) 146, 241, 481, 538
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 159
NspI RCATGY 1 cut(s) 722
NspV TTCGAA 1 cut(s) 504
PctI GAATGC 1 cut(s) 764
PdmI GAANNNNTTC 1 cut(s) 484
PkrI GCNGC 1 cut(s) 671
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 3 cut(s) 132, 576, 631
PspGI CCWGG 3 cut(s) 132, 576, 631
PspN4I GGNNCC 4 cut(s) 146, 241, 481, 538
PspPI GGNCC 3 cut(s) 313, 536, 584
PstI CTGCAG 2 cut(s) 518, 642
PvuII CAGCTG 1 cut(s) 812
RsaI GTAC 2 cut(s) 131, 146
RsaNI GTAC 2 cut(s) 130, 145
SacI GAGCTC 1 cut(s) 57
SatI GCNGC 1 cut(s) 670
Sau3AI GATC 1 cut(s) 547
Sau96I GGNCC 3 cut(s) 313, 536, 584
ScrFI CCNGG 3 cut(s) 134, 578, 633
SduI GDGCHC 3 cut(s) 57, 288, 354
SexAI ACCWGGT 1 cut(s) 631
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 2 cut(s) 514, 638
SfuI TTCGAA 1 cut(s) 504
SinI GGWCC 2 cut(s) 313, 536
SmlI CTYRAG 2 cut(s) 198, 251
SmoI CTYRAG 2 cut(s) 198, 251
SsiI CCGC 1 cut(s) 785
SspMI CTAG 3 cut(s) 272, 374, 830
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 3 cut(s) 132, 576, 631
TaaI ACNGT 2 cut(s) 595, 836
TaqI TCGA 1 cut(s) 504
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 669
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 635
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 2 cut(s) 313, 536
XapI RAATTY 4 cut(s) 15, 659, 703, 872
XceI RCATGY 1 cut(s) 722
XmnI GAANNNNTTC 1 cut(s) 484
XspI CTAG 3 cut(s) 272, 374, 830
Zsp2I ATGCAT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.