AT5G43690

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001120
Physical Location & Seq
Forward (+)
17546112 .. 17547485
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43690.1

Sequence Viewer

Length: 996 bp
ATGGCTGGAAAAAGTGATCTTCCTGTGATCGCGAGAGACGACAACCTAAGTGAAGAAACAAAAACTCTGATCTCTTCACTTCCTACATACCAAGATTCTCATGTGAAGCTCTGCAAGTACCAAGGATGTTGGTATTACCACAACACTCTCCAAGCAGTCATCAACTACCAAAGAAACTTCCAGCCGCAAGACACCGACATTATTCTCGCGTCTTTCCCCAAATCCGGTACAACTTGGCTCAAGGCACTCTCAGTCGCAATCGTGGAGAGATCTAAACAGCCTTTTGATGATGATCCCCTCACACATCCTTTGCTATCCGATAATCCTCATGGCATAGTACCGTTCTTTGAGTTCGATATGTATCTCAAAACCTCAACACCGGACTTAACCAAGTTCTCAACATCATCCCCGAGGCTGTTTTCGACTCACATGCCTTTACACACCTTCAAAGAGGGCCTCAAGGGTTCTCCATGCAAGGTTGTGTATATGTGCAGGAACATAAAGGATGTTTTGATATCGGATTGGCATTTCAGGTCCAAGTATAGCAACAATGAAGTATCTAGAAGCACTCTTGAGTCAATGTTCGAGTCATTCTGTGGCGGAGTTAGCTTCTATGGTCCGTTTTGGGACCATGCTCTAAGCTATTGGAGAGGCAGCTTGGAAAACCCCAAGCATGTCCTTTTCATGAGGTACGAGGAAATGAAAACAGAGCCGTGTGTCCAGGTCAAGAGGCTTGCCGAGTTTTTGGGGTTTCCTTTCACTAAGGAAGAAGAAGATAGTGGTTCGATTAGCAAACTCTTGGAACTATGCTCTCTTGGTAATCTGAGCGGTTTGGAGGTTAACAAAACCGGAAAAACATGGATGAACTATGACTACAAAAGCTATTTCCGCAAAGGAGAAGTTGGTGACTGGAAGAATCATCTAACTCCCGAAATGGAGAACAAAATCGACATGATCATCGAGGAGAAATTAAAAGGTTCGGACTTGAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

331

Amino Acids

38.19

Weight (kDa)

6.22

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 64 - 327 3.3e-73 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 828
AccII CGCG 2 cut(s) 32, 209
AciI CCGC 4 cut(s) 185, 600, 828, 889
AclWI GGATC 1 cut(s) 287
AfaI GTAC 4 cut(s) 119, 229, 339, 692
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 2 cut(s) 448, 988
AjnI CCWGG 1 cut(s) 720
AloI GAACNNNNNNTCC 1 cut(s) 974
AluBI AGCT 5 cut(s) 109, 609, 642, 657, 882
AluI AGCT 5 cut(s) 109, 609, 642, 657, 882
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 409
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 1 cut(s) 654
AspS9I GGNCC 4 cut(s) 454, 534, 617, 628
AsuHPI GGTGA 1 cut(s) 917
AvaI CYCGRG 1 cut(s) 409
AvaII GGWCC 3 cut(s) 534, 617, 628
BbvI GCAGC 1 cut(s) 666
BceAI ACGGC 1 cut(s) 697
BcgI CGANNNNNNTGC 2 cut(s) 412, 446
BciT130I CCWGG 1 cut(s) 722
BclI TGATCA 1 cut(s) 954
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 2 cut(s) 561, 994
BglII AGATCT 1 cut(s) 269
BisI GCNGC 2 cut(s) 185, 655
BlsI GCNGC 2 cut(s) 186, 656
Bme1390I CCNGG 1 cut(s) 722
Bme18I GGWCC 3 cut(s) 534, 617, 628
BmeT110I CYCGRG 1 cut(s) 409
BmgT120I GGNCC 4 cut(s) 454, 534, 617, 628
BmiI GGNNCC 1 cut(s) 629
BmrFI CCNGG 1 cut(s) 722
BpuEI CTTGAG 3 cut(s) 224, 443, 593
BsaBI GATNNNNATC 2 cut(s) 291, 360
BsaJI CCNNGG 2 cut(s) 121, 410
BsaWI WCCGGW 3 cut(s) 224, 379, 848
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 914
Bse8I GATNNNNATC 2 cut(s) 291, 360
BseBI CCWGG 1 cut(s) 722
BseDI CCNNGG 2 cut(s) 121, 410
BseGI GGATG 5 cut(s) 131, 304, 404, 511, 867
BseJI GATNNNNATC 2 cut(s) 291, 360
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 2 cut(s) 264, 815
BseNI ACTGG 1 cut(s) 914
BseRI GAGGAG 1 cut(s) 977
BseXI GCAGC 1 cut(s) 666
BsgI GTGCAG 1 cut(s) 511
Bsh1236I CGCG 2 cut(s) 32, 209
BshFI GGCC 1 cut(s) 456
BsiHKCI CYCGRG 1 cut(s) 409
BsiSI CCGG 3 cut(s) 225, 380, 849
BslFI GGGAC 1 cut(s) 641
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 30
BsmBI CGTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 641
BsnI GGCC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 409
Bsp143I GATC 6 cut(s) 16, 27, 69, 269, 292, 954
Bsp68I TCGCGA 1 cut(s) 32
BspACI CCGC 4 cut(s) 185, 600, 828, 889
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 2 cut(s) 263, 816
BspFNI CGCG 2 cut(s) 32, 209
BspHI TCATGA 1 cut(s) 684
BspLI GGNNCC 1 cut(s) 629
BspPI GGATC 1 cut(s) 287
BsrBI CCGCTC 1 cut(s) 828
BsrI ACTGG 1 cut(s) 914
BssECI CCNNGG 2 cut(s) 121, 410
BssMI GATC 6 cut(s) 16, 27, 69, 269, 292, 954
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 722
Bst4CI ACNGT 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 735
BstDEI CTNAG 5 cut(s) 47, 250, 638, 762, 824
BstF5I GGATG 5 cut(s) 131, 304, 404, 511, 867
BstFNI CGCG 2 cut(s) 32, 209
BstKTI GATC 6 cut(s) 19, 30, 72, 272, 295, 957
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 6 cut(s) 16, 27, 69, 269, 292, 954
BstMWI GCNNNNNNNGC 2 cut(s) 606, 888
BstNI CCWGG 1 cut(s) 722
BstNSI RCATGY 2 cut(s) 433, 677
BstSCI CCNGG 1 cut(s) 720
BstUI CGCG 2 cut(s) 32, 209
BstV1I GCAGC 1 cut(s) 666
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 1 cut(s) 456
BtsCI GGATG 5 cut(s) 131, 304, 404, 511, 867
BtuMI TCGCGA 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 735
CciI TCATGA 1 cut(s) 684
Cfr13I GGNCC 4 cut(s) 454, 534, 617, 628
CseI GACGC 1 cut(s) 198
Csp6I GTAC 4 cut(s) 118, 228, 338, 691
CviAII CATG 9 cut(s) 101, 329, 430, 471, 632, 674, 685, 858, 952
CviQI GTAC 4 cut(s) 118, 228, 338, 691
DdeI CTNAG 5 cut(s) 47, 250, 638, 762, 824
DpnI GATC 6 cut(s) 18, 29, 71, 271, 294, 956
DpnII GATC 6 cut(s) 16, 27, 69, 269, 292, 954
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
EciI GGCGGA 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 121
Eco32I GATATC 1 cut(s) 516
Eco47I GGWCC 3 cut(s) 534, 617, 628
Eco88I CYCGRG 1 cut(s) 409
EcoO109I RGGNCCY 1 cut(s) 454
EcoRII CCWGG 1 cut(s) 720
EcoRV GATATC 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 9 cut(s) 104, 332, 433, 474, 635, 677, 688, 861, 955
FaqI GGGAC 1 cut(s) 641
FatI CATG 9 cut(s) 100, 328, 429, 470, 631, 673, 684, 857, 951
FbaI TGATCA 1 cut(s) 954
Fnu4HI GCNGC 2 cut(s) 185, 655
FokI GGATG 5 cut(s) 138, 291, 391, 518, 874
Fsp4HI GCNGC 2 cut(s) 185, 655
FspBI CTAG 2 cut(s) 561, 994
GluI GCNGC 2 cut(s) 185, 655
HaeIII GGCC 1 cut(s) 456
HapII CCGG 3 cut(s) 225, 380, 849
HgaI GACGC 1 cut(s) 198
Hin1II CATG 9 cut(s) 104, 332, 433, 474, 635, 677, 688, 861, 955
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HinfI GANTC 5 cut(s) 95, 424, 575, 587, 916
HpaI GTTAAC 1 cut(s) 841
HpaII CCGG 3 cut(s) 225, 380, 849
HphI GGTGA 1 cut(s) 917
Hpy166II GTNNAC 1 cut(s) 841
Hpy188I TCNGA 5 cut(s) 69, 319, 520, 825, 982
Hpy188III TCNNGA 6 cut(s) 31, 561, 572, 685, 727, 929
Hpy8I GTNNAC 1 cut(s) 841
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4V TGCA 3 cut(s) 114, 474, 492
HpyF10VI GCNNNNNNNGC 2 cut(s) 606, 888
HpyF3I CTNAG 5 cut(s) 47, 250, 638, 762, 824
Hsp92II CATG 9 cut(s) 104, 332, 433, 474, 635, 677, 688, 861, 955
Ksp22I TGATCA 1 cut(s) 954
KspAI GTTAAC 1 cut(s) 841
Kzo9I GATC 6 cut(s) 16, 27, 69, 269, 292, 954
Lsp1109I GCAGC 1 cut(s) 666
MaeI CTAG 2 cut(s) 561, 994
MaeIII GTNAC 1 cut(s) 905
MalI GATC 6 cut(s) 18, 29, 71, 271, 294, 956
MbiI CCGCTC 1 cut(s) 828
MboI GATC 6 cut(s) 16, 27, 69, 269, 292, 954
MboII GAAGA 7 cut(s) 11, 65, 66, 779, 782, 785, 925
MflI RGATCY 1 cut(s) 269
MluCI AATT 1 cut(s) 968
MlyI GAGTC 3 cut(s) 418, 584, 596
MseI TTAA 3 cut(s) 386, 840, 971
MspI CCGG 3 cut(s) 225, 380, 849
MspR9I CCNGG 1 cut(s) 722
MvaI CCWGG 1 cut(s) 722
MvnI CGCG 2 cut(s) 32, 209
MwoI GCNNNNNNNGC 2 cut(s) 606, 888
NdeII GATC 6 cut(s) 16, 27, 69, 269, 292, 954
NlaIII CATG 9 cut(s) 104, 332, 433, 474, 635, 677, 688, 861, 955
NlaIV GGNNCC 1 cut(s) 629
NmeAIII GCCGAG 1 cut(s) 763
NmuCI GTSAC 1 cut(s) 905
NruI TCGCGA 1 cut(s) 32
NspI RCATGY 2 cut(s) 433, 677
PagI TCATGA 1 cut(s) 684
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PfeI GAWTC 2 cut(s) 95, 916
PkrI GCNGC 2 cut(s) 186, 656
PleI GAGTC 3 cut(s) 418, 583, 595
PpsI GAGTC 3 cut(s) 418, 583, 595
Psp6I CCWGG 1 cut(s) 720
PspGI CCWGG 1 cut(s) 720
PspN4I GGNNCC 1 cut(s) 629
PspPI GGNCC 4 cut(s) 454, 534, 617, 628
PsrI GAACNNNNNNTAC 2 cut(s) 857, 889
PsuI RGATCY 1 cut(s) 269
RruI TCGCGA 1 cut(s) 32
RsaI GTAC 4 cut(s) 119, 229, 339, 692
RsaNI GTAC 4 cut(s) 118, 228, 338, 691
SaqAI TTAA 3 cut(s) 386, 840, 971
SatI GCNGC 2 cut(s) 185, 655
Sau3AI GATC 6 cut(s) 16, 27, 69, 269, 292, 954
Sau96I GGNCC 4 cut(s) 454, 534, 617, 628
SchI GAGTC 3 cut(s) 418, 584, 596
ScrFI CCNGG 1 cut(s) 722
SinI GGWCC 3 cut(s) 534, 617, 628
SmlI CTYRAG 3 cut(s) 239, 458, 572
SmoI CTYRAG 3 cut(s) 239, 458, 572
Sse9I AATT 1 cut(s) 968
SsiI CCGC 4 cut(s) 185, 600, 828, 889
SspMI CTAG 2 cut(s) 561, 994
StyD4I CCNGG 1 cut(s) 720
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 1 cut(s) 342
TaqI TCGA 6 cut(s) 354, 422, 585, 785, 948, 960
TasI AATT 1 cut(s) 968
TauI GCSGC 1 cut(s) 187
TfiI GAWTC 2 cut(s) 95, 916
Tru1I TTAA 3 cut(s) 386, 840, 971
Tru9I TTAA 3 cut(s) 386, 840, 971
TseFI GTSAC 1 cut(s) 905
TseI GCWGC 1 cut(s) 654
Tsp45I GTSAC 1 cut(s) 905
TspDTI ATGAA 4 cut(s) 567, 673, 716, 878
TspGWI ACGGA 1 cut(s) 609
VpaK11BI GGWCC 3 cut(s) 534, 617, 628
XbaI TCTAGA 1 cut(s) 560
XceI RCATGY 2 cut(s) 433, 677
XspI CTAG 2 cut(s) 561, 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.