Rroxscaffold_5G00378630

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001120
Physical Location & Seq
Forward (+)
59084802 .. 59085803
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378630.1

Sequence Viewer

Length: 1002 bp
ATGTCACTACCTCAAACTCCTCCTTCTCTTCCCCAATACTTGCAAGAAATTGAGCTCAGCCAAGAAACCAGAGACCTAATATCCACGCTACCTACTGAGAAAGGTTTGATTTCAGGTAATTTGCATCAGTACAAGGGCTGTTGGTGCCCCAATACGTATATCCAAGGAGTTTTAGCCTTCCAAAAACACTTTCAAGCACAAGATACTGATATCCTTCTTGCTACTACTCCCAAATCAGGCACCACTTGGCTCAAGGCAATTCTGTTTGCCCTAGTAAACCGAGTGCACTATCATCCAGACCCTCAGAACCAAGACCACCCCTTGCTCAGAAACAATTCTCATGCTCTTGTGCCCTTCTTGGAGACTAATCTGTACTTTAAGAAACTGATTCCTGACCTCACCTCCTATGCCCCTCCCAGGCTCTTTTCAACTCACTTACCACTAGCGTCTCTGCCACAATCTGTTAAAGAGTCTGCTTGCAAAGTCGTCTATCTGTGTAGAAACCCTAAGGACATAATAGTTTCACTTTGGCACTTCACAAACAGATTGAGACACAGGAGTATGGGAACCAATTCACTTGAAGAAGTATTGGAATACTTCTGCAGGGGAGTGAGTGCATTTGGACCTTTTTGGGATCATGTGTCGGGCTATTGGAAGGAGAGCTTGGAAAGGCCTGAAACGGTGTTCTTCATCAAATATGAAGAAATGAAAGAACAACCTGGTCTGCACTTGAGGAGGCTAGCTGAGTTCTTAGGGTGCCCATTCTCACCAGAAGAAGAGGCACAGGGAGTGGTGGACAATATCTTAAGGCTGTGTAGTTTTGAGAATCTGAGCAATTTGGATGTGAACAAAAAGGGGAAATTATCGACAGGGGTGGAGAATAGTGCATTCTTTCGGCGAGGGGAGGCGGGAGACTGGAGGAATTGTTTGACAGGTGAGATGGTGGAACAGCTAGACCGTATCACTGAAGAGAAGTTGCAAGGTTCTGGATTAAAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

333

Amino Acids

38.1

Weight (kDa)

6.42

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 68 - 330 9.4e-78 Sulfotransferase domain
Sulfotransfer_3 PF13469 161 - 256 7.7e-07 Sulfotransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 144, 239, 756
AciI CCGC 1 cut(s) 908
AclWI GGATC 1 cut(s) 642
AcsI RAATTY 1 cut(s) 995
AcuI CTGAAG 1 cut(s) 987
AfaI GTAC 2 cut(s) 131, 374
AfiI CCNNNNNNNGG 2 cut(s) 236, 417
AflII CTTAAG 1 cut(s) 805
AgsI TTSAA 3 cut(s) 194, 429, 581
AjnI CCWGG 2 cut(s) 416, 718
AjuI GAANNNNNNNTTGG 4 cut(s) 174, 206, 647, 679
AluBI AGCT 4 cut(s) 55, 663, 743, 952
AluI AGCT 4 cut(s) 55, 663, 743, 952
Alw21I GWGCWC 2 cut(s) 57, 288
Alw26I GTCTC 5 cut(s) 66, 356, 453, 544, 906
Alw44I GTGCAC 1 cut(s) 284
AlwI GGATC 1 cut(s) 642
AoxI GGCC 1 cut(s) 671
ApaLI GTGCAC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 995
Asp700I GAANNNNTTC 2 cut(s) 334, 571
AspS9I GGNCC 1 cut(s) 623
AsuHPI GGTGA 3 cut(s) 391, 759, 947
AsuNHI GCTAGC 1 cut(s) 739
AvaII GGWCC 1 cut(s) 623
AxyI CCTNAGG 1 cut(s) 507
BaeGI GKGCMC 4 cut(s) 149, 288, 354, 761
BanI GGYRCC 3 cut(s) 144, 239, 756
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 2 cut(s) 57, 288
BccI CCATC 1 cut(s) 934
BciT130I CCWGG 2 cut(s) 418, 720
BcoDI GTCTC 5 cut(s) 66, 356, 453, 544, 906
BfaI CTAG 4 cut(s) 272, 443, 740, 953
BfmI CTRYAG 1 cut(s) 601
BfrI CTTAAG 1 cut(s) 805
BlpI GCTNAGC 1 cut(s) 56
Bme1390I CCNGG 2 cut(s) 418, 720
Bme18I GGWCC 1 cut(s) 623
BmgT120I GGNCC 1 cut(s) 623
BmiI GGNNCC 4 cut(s) 146, 241, 568, 758
BmrFI CCNGG 2 cut(s) 418, 720
BmsI GCATC 1 cut(s) 133
BmtI GCTAGC 1 cut(s) 743
BpmI CTGGAG 1 cut(s) 937
Bpu1102I GCTNAGC 1 cut(s) 56
BpuEI CTTGAG 2 cut(s) 236, 751
BsaAI YACGTR 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 163, 416
BsaXI ACNNNNNCTCC 4 cut(s) 386, 416, 910, 940
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 417
Bse1I ACTGG 1 cut(s) 920
Bse21I CCTNAGG 1 cut(s) 507
BseBI CCWGG 2 cut(s) 418, 720
BseDI CCNNGG 2 cut(s) 163, 416
BseGI GGATG 2 cut(s) 292, 847
BseLI CCNNNNNNNGG 2 cut(s) 236, 417
BseMII CTCAG 6 cut(s) 70, 87, 317, 340, 735, 821
BseNI ACTGG 1 cut(s) 920
BseRI GAGGAG 2 cut(s) 9, 748
BseSI GKGCMC 4 cut(s) 149, 288, 354, 761
BsgI GTGCAG 1 cut(s) 710
BshFI GGCC 1 cut(s) 673
BshNI GGYRCC 3 cut(s) 144, 239, 756
BsiHKAI GWGCWC 2 cut(s) 57, 288
BslI CCNNNNNNNGG 2 cut(s) 236, 417
BsmAI GTCTC 5 cut(s) 66, 356, 453, 544, 906
BsmBI CGTCTC 1 cut(s) 453
BsmI GAATGC 1 cut(s) 887
BsnI GGCC 1 cut(s) 673
Bso31I GGTCTC 1 cut(s) 66
Bsp1286I GDGCHC 5 cut(s) 57, 149, 288, 354, 761
Bsp143I GATC 1 cut(s) 634
Bsp1720I GCTNAGC 1 cut(s) 56
BspACI CCGC 1 cut(s) 908
BspANI GGCC 1 cut(s) 673
BspCNI CTCAG 6 cut(s) 69, 88, 316, 339, 736, 822
BspLI GGNNCC 4 cut(s) 146, 241, 568, 758
BspMAI CTGCAG 1 cut(s) 605
BspOI GCTAGC 1 cut(s) 743
BspPI GGATC 1 cut(s) 642
BspT107I GGYRCC 3 cut(s) 144, 239, 756
BspTI CTTAAG 1 cut(s) 805
BspTNI GGTCTC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 920
BssECI CCNNGG 2 cut(s) 163, 416
BssMI GATC 1 cut(s) 634
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 2 cut(s) 418, 720
Bst4CI ACNGT 2 cut(s) 682, 959
Bst6I CTCTTC 3 cut(s) 33, 771, 963
BstAFI CTTAAG 1 cut(s) 805
BstBAI YACGTR 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 478, 741
BstDEI CTNAG 8 cut(s) 56, 96, 303, 326, 507, 744, 751, 830
BstF5I GGATG 2 cut(s) 292, 847
BstKTI GATC 1 cut(s) 637
BstMAI GTCTC 5 cut(s) 66, 356, 453, 544, 906
BstMBI GATC 1 cut(s) 634
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 2 cut(s) 418, 720
BstSCI CCNGG 2 cut(s) 416, 718
BstSFI CTRYAG 1 cut(s) 601
BstSLI GKGCMC 4 cut(s) 149, 288, 354, 761
BstSNI TACGTA 1 cut(s) 156
Bsu36I CCTNAGG 1 cut(s) 507
BsuRI GGCC 1 cut(s) 673
BtsCI GGATG 2 cut(s) 292, 847
BtsIMutI CAGTG 1 cut(s) 963
Cac8I GCNNGC 2 cut(s) 478, 741
Cfr13I GGNCC 1 cut(s) 623
CseI GACGC 1 cut(s) 435
CsiI ACCWGGT 1 cut(s) 718
Csp6I GTAC 2 cut(s) 130, 373
CviAII CATG 2 cut(s) 341, 638
CviQI GTAC 2 cut(s) 130, 373
DdeI CTNAG 8 cut(s) 56, 96, 303, 326, 507, 744, 751, 830
DpnI GATC 1 cut(s) 636
DpnII GATC 1 cut(s) 634
Eam1104I CTCTTC 3 cut(s) 33, 771, 963
EarI CTCTTC 3 cut(s) 33, 771, 963
Ecl136II GAGCTC 1 cut(s) 55
Eco105I TACGTA 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 163
Eco147I AGGCCT 1 cut(s) 673
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 623
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 987
Eco81I CCTNAGG 1 cut(s) 507
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 416, 718
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 163
Esp3I CGTCTC 1 cut(s) 453
FaeI CATG 2 cut(s) 344, 641
FaiI YATR 7 cut(s) 159, 342, 408, 515, 563, 639, 699
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FatI CATG 2 cut(s) 340, 637
FauI CCCGC 1 cut(s) 901
FokI GGATG 2 cut(s) 279, 854
FriOI GRGCYC 1 cut(s) 57
FspBI CTAG 4 cut(s) 272, 443, 740, 953
GsuI CTGGAG 1 cut(s) 937
HaeIII GGCC 1 cut(s) 673
HgaI GACGC 1 cut(s) 435
Hin1II CATG 2 cut(s) 344, 641
HinfI GANTC 3 cut(s) 388, 470, 826
HphI GGTGA 3 cut(s) 391, 759, 947
Hpy166II GTNNAC 4 cut(s) 277, 286, 796, 847
Hpy188I TCNGA 3 cut(s) 306, 329, 831
Hpy188III TCNNGA 3 cut(s) 296, 392, 987
Hpy8I GTNNAC 4 cut(s) 277, 286, 796, 847
HpyAV CCTTC 5 cut(s) 33, 187, 224, 364, 649
HpyCH4III ACNGT 2 cut(s) 682, 959
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 9 cut(s) 43, 124, 286, 480, 603, 617, 727, 887, 979
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 8 cut(s) 56, 96, 303, 326, 507, 744, 751, 830
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 2 cut(s) 344, 641
Kzo9I GATC 1 cut(s) 634
LweI GCATC 1 cut(s) 133
MabI ACCWGGT 1 cut(s) 718
MaeI CTAG 4 cut(s) 272, 443, 740, 953
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 3
MalI GATC 1 cut(s) 636
MboI GATC 1 cut(s) 634
MboII GAAGA 7 cut(s) 20, 593, 679, 713, 785, 788, 980
MhlI GDGCHC 5 cut(s) 57, 149, 288, 354, 761
MluCI AATT 9 cut(s) 48, 118, 258, 334, 571, 835, 860, 922, 995
MlyI GAGTC 1 cut(s) 479
MroXI GAANNNNTTC 2 cut(s) 334, 571
MseI TTAA 4 cut(s) 378, 465, 806, 992
MspCI CTTAAG 1 cut(s) 805
MspR9I CCNGG 2 cut(s) 418, 720
Mva1269I GAATGC 1 cut(s) 887
MvaI CCWGG 2 cut(s) 418, 720
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeII GATC 1 cut(s) 634
NheI GCTAGC 1 cut(s) 739
NlaIII CATG 2 cut(s) 344, 641
NlaIV GGNNCC 4 cut(s) 146, 241, 568, 758
NmuCI GTSAC 1 cut(s) 3
PceI AGGCCT 1 cut(s) 673
PctI GAATGC 1 cut(s) 887
PdmI GAANNNNTTC 2 cut(s) 334, 571
PfeI GAWTC 2 cut(s) 388, 826
PleI GAGTC 1 cut(s) 478
PpsI GAGTC 1 cut(s) 478
Ppu21I YACGTR 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 416, 718
PspGI CCWGG 2 cut(s) 416, 718
PspN4I GGNNCC 4 cut(s) 146, 241, 568, 758
PspPI GGNCC 1 cut(s) 623
PstI CTGCAG 1 cut(s) 605
RsaI GTAC 2 cut(s) 131, 374
RsaNI GTAC 2 cut(s) 130, 373
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 4 cut(s) 378, 465, 806, 992
Sau3AI GATC 1 cut(s) 634
Sau96I GGNCC 1 cut(s) 623
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 2 cut(s) 418, 720
SduI GDGCHC 5 cut(s) 57, 149, 288, 354, 761
SexAI ACCWGGT 1 cut(s) 718
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 601
SinI GGWCC 1 cut(s) 623
SmlI CTYRAG 3 cut(s) 251, 730, 805
SmoI CTYRAG 3 cut(s) 251, 730, 805
SnaBI TACGTA 1 cut(s) 156
Sse9I AATT 9 cut(s) 48, 118, 258, 334, 571, 835, 860, 922, 995
SseBI AGGCCT 1 cut(s) 673
SsiI CCGC 1 cut(s) 908
SspMI CTAG 4 cut(s) 272, 443, 740, 953
SstI GAGCTC 1 cut(s) 57
StuI AGGCCT 1 cut(s) 673
StyD4I CCNGG 2 cut(s) 416, 718
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 2 cut(s) 682, 959
TaiI ACGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 866
TasI AATT 9 cut(s) 48, 118, 258, 334, 571, 835, 860, 922, 995
TatI WGTACW 2 cut(s) 129, 372
TfiI GAWTC 2 cut(s) 388, 826
Tru1I TTAA 4 cut(s) 378, 465, 806, 992
Tru9I TTAA 4 cut(s) 378, 465, 806, 992
TscAI CASTG 1 cut(s) 970
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 3 cut(s) 679, 714, 722
TspRI CASTG 1 cut(s) 970
Vha464I CTTAAG 1 cut(s) 805
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 623
XapI RAATTY 1 cut(s) 995
XmnI GAANNNNTTC 2 cut(s) 334, 571
XspI CTAG 4 cut(s) 272, 443, 740, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.