Rroxscaffold_5G00378530

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001120
Physical Location & Seq
Forward (+)
58987395 .. 58989481
2087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378530.1

Sequence Viewer

Length: 1233 bp
ATGATATCCACTCTACCTAGAGAAAAAGGTTGGGTTGCAAATCATCTCCATCAATACCAAGGCTTTTGGCACTCAACTAGGCAGATGCAAGGAGTCTTGGCGTGCCAAAAACACTTCCAAGCCCAAGATTCTGATATCCTTCTTGTTACTACTCCTAAATCAGGTACCACTTGGCTCAAGGCAATTTTGTTTTCCCTAGTTAAACGAGGAGAGCACTATCATCCAGACCCTCAACACCACCCTTTGCTCACAAAAAATCCTCATGTTCTTGTGCCCTTCTTGGAGCTCAATCTGTACCTTGAGAAACCGGTACCTGACCTCATGACCTCCTATCCCCCTCCTCGGCTCTTTTCAACTCACTTACCACTTGTGTCTCTACCGGAATCGGTCAAAGACTCTGCTTGCAAGGTTGTCTATTTGTGTAGAAACCCTAAGGACACATTTGTTTCACTCTGGCACTTCACAAACAGATTGAGACCCGAGGGTAGGGGAACCAATCCACTTGAAGAAGCATTGGAAAAGTTCTGCAGGGGAGTGAGTTTGTATGGACCCTTTTGGGATCATGTGTTGGGGTACTGGAATGAGAGCTTGAAAAGGCCTGAAAGGGTATTTTTCATCAAATATGAGGAAATGAAAGGACAACCCGGTTTTCACTTGAGGAGGCTAGCCGAGTTCTTGGGGTGCCCATTTTTCCCAGAAGAAGAGGCACAGGGAGTGGTGGACAAGATCTTAAGGCTCTGTAGTTTTGAGACTCTGAGCAATTTGGATGTGAACAAAAATGGGAAGTTATCGTCCGGTGAGGAGCATAGTGCTTTCTTTCGGCGAGGGGAGGCTGGAGAGTGGAAGAATCTTTTGACAGCTAAGATGGCGGAACAGCTAGACCGTATCACTGAAGAGAAGTTGCAAGGGCGCAGTGATAAGGCTATCTGGCTATGCATTTTAAGAAAATTCCAAATCGATTGTTCGACGCCACCCTCCGCGTCCTTCTTCGACGCCACCCTCCGCGTCCGCGTCAACTACCTCGCCGTCGTCGCCCTCATCGTCGTCGTCTCCCTCTTCACCCACCCCTTCTCCCTCGGCCTCCTCGCCGCCCGGCTCTTCCTCTACCTCTTCCGCCCCTCCGATCAGCCCCTCGTTATCTTCGGCCGGACTTTCTCCGACATCCAAACCTTAATGGGCCTCGTCGGCCTCGGCGTCTTCGTCGTCTTCCTCACCTCCGTCGGGGTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

410

Amino Acids

46.85

Weight (kDa)

8.76

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 43 - 303 3.7e-75 Sulfotransferase domain
PRA1 PF03208 337 - 409 8.1e-13 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 164, 310
AccB1I GGYRCC 3 cut(s) 164, 310, 681
AccII CGCG 3 cut(s) 980, 1005, 1011
AciI CCGC 6 cut(s) 869, 978, 1003, 1009, 1089, 1114
AclWI GGATC 1 cut(s) 567
AcoI YGGCCR 1 cut(s) 1144
AcsI RAATTY 1 cut(s) 947
AcuI CTGAAG 1 cut(s) 912
AcyI GRCGYC 3 cut(s) 968, 993, 1194
AfaI GTAC 4 cut(s) 166, 296, 312, 575
AfiI CCNNNNNNNGG 4 cut(s) 161, 342, 486, 1221
AflII CTTAAG 1 cut(s) 730
AgeI ACCGGT 1 cut(s) 307
AgsI TTSAA 3 cut(s) 354, 506, 592
AluBI AGCT 4 cut(s) 286, 588, 860, 877
AluI AGCT 4 cut(s) 286, 588, 860, 877
Alw21I GWGCWC 2 cut(s) 216, 288
Alw26I GTCTC 4 cut(s) 378, 469, 743, 1054
AlwI GGATC 1 cut(s) 567
Ama87I CYCGRG 1 cut(s) 479
AoxI GGCC 5 cut(s) 596, 1078, 1144, 1177, 1186
ApoI RAATTY 1 cut(s) 947
AsiGI ACCGGT 1 cut(s) 307
Asp718I GGTACC 2 cut(s) 164, 310
AspLEI GCGC 1 cut(s) 912
AspS9I GGNCC 2 cut(s) 548, 1177
AsuC2I CCSGG 2 cut(s) 645, 1093
AsuHPI GGTGA 3 cut(s) 809, 1051, 1204
AsuNHI GCTAGC 1 cut(s) 664
AvaI CYCGRG 1 cut(s) 479
AvaII GGWCC 1 cut(s) 548
AxyI CCTNAGG 1 cut(s) 432
BaeGI GKGCMC 2 cut(s) 276, 686
BanI GGYRCC 3 cut(s) 164, 310, 681
BanII GRGCYC 1 cut(s) 288
BbsI GAAGAC 2 cut(s) 1189, 1198
Bbv12I GWGCWC 2 cut(s) 216, 288
BccI CCATC 2 cut(s) 57, 859
BceAI ACGGC 1 cut(s) 1010
BcnI CCSGG 2 cut(s) 645, 1093
BcoDI GTCTC 4 cut(s) 378, 469, 743, 1054
BfaI CTAG 5 cut(s) 18, 78, 197, 665, 878
BfmI CTRYAG 2 cut(s) 526, 739
BfrI CTTAAG 1 cut(s) 730
BglI GCCNNNNNGGC 1 cut(s) 1185
BglII AGATCT 1 cut(s) 726
BisI GCNGC 1 cut(s) 1089
BlsI GCNGC 1 cut(s) 1090
Bme1390I CCNGG 2 cut(s) 645, 1093
Bme18I GGWCC 1 cut(s) 548
BmeT110I CYCGRG 1 cut(s) 479
BmgT120I GGNCC 2 cut(s) 548, 1177
BmiI GGNNCC 5 cut(s) 166, 312, 493, 550, 683
BmrFI CCNGG 2 cut(s) 645, 1093
BmsI GCATC 1 cut(s) 75
BmtI GCTAGC 1 cut(s) 668
BpiI GAAGAC 2 cut(s) 1189, 1198
BpmI CTGGAG 1 cut(s) 855
BpuEI CTTGAG 3 cut(s) 161, 320, 676
BpuMI CCSGG 2 cut(s) 645, 1093
Bsa29I ATCGAT 1 cut(s) 957
BsaHI GRCGYC 3 cut(s) 968, 993, 1194
BsaI GGTCTC 1 cut(s) 469
BsaJI CCNNGG 5 cut(s) 58, 341, 480, 1075, 1189
BsaWI WCCGGW 3 cut(s) 307, 379, 794
BsaXI ACNNNNNCTCC 2 cut(s) 1055, 1085
Bsc4I CCNNNNNNNGG 4 cut(s) 161, 342, 486, 1221
Bse118I RCCGGY 1 cut(s) 307
Bse1I ACTGG 1 cut(s) 581
Bse21I CCTNAGG 1 cut(s) 432
BseCI ATCGAT 1 cut(s) 957
BseDI CCNNGG 5 cut(s) 58, 341, 480, 1075, 1189
BseGI GGATG 3 cut(s) 220, 772, 1161
BseLI CCNNNNNNNGG 4 cut(s) 161, 342, 486, 1221
BseMII CTCAG 1 cut(s) 746
BseNI ACTGG 1 cut(s) 581
BseRI GAGGAG 5 cut(s) 222, 330, 673, 815, 1073
BseSI GKGCMC 2 cut(s) 276, 686
BseX3I CGGCCG 1 cut(s) 1144
Bsh1236I CGCG 3 cut(s) 980, 1005, 1011
Bsh1285I CGRYCG 1 cut(s) 1147
BshFI GGCC 5 cut(s) 598, 1080, 1146, 1179, 1188
BshNI GGYRCC 3 cut(s) 164, 310, 681
BshTI ACCGGT 1 cut(s) 307
BshVI ATCGAT 1 cut(s) 957
BsiEI CGRYCG 1 cut(s) 1147
BsiHKAI GWGCWC 2 cut(s) 216, 288
BsiHKCI CYCGRG 1 cut(s) 479
BsiSI CCGG 6 cut(s) 308, 380, 645, 795, 1093, 1147
BslI CCNNNNNNNGG 4 cut(s) 161, 342, 486, 1221
BsmAI GTCTC 4 cut(s) 378, 469, 743, 1054
BsmBI CGTCTC 1 cut(s) 1054
BsnI GGCC 5 cut(s) 598, 1080, 1146, 1179, 1188
Bso31I GGTCTC 1 cut(s) 469
BsoBI CYCGRG 1 cut(s) 479
Bsp1286I GDGCHC 4 cut(s) 216, 276, 288, 686
Bsp143I GATC 3 cut(s) 559, 726, 1123
BspACI CCGC 6 cut(s) 869, 978, 1003, 1009, 1089, 1114
BspANI GGCC 5 cut(s) 598, 1080, 1146, 1179, 1188
BspCNI CTCAG 1 cut(s) 747
BspDI ATCGAT 1 cut(s) 957
BspFNI CGCG 3 cut(s) 980, 1005, 1011
BspHI TCATGA 1 cut(s) 321
BspLI GGNNCC 5 cut(s) 166, 312, 493, 550, 683
BspMAI CTGCAG 1 cut(s) 530
BspOI GCTAGC 1 cut(s) 668
BspPI GGATC 1 cut(s) 567
BspQI GCTCTTC 1 cut(s) 1103
BspT107I GGYRCC 3 cut(s) 164, 310, 681
BspTI CTTAAG 1 cut(s) 730
BspTNI GGTCTC 1 cut(s) 469
BsrFI RCCGGY 1 cut(s) 307
BsrI ACTGG 1 cut(s) 581
BssAI RCCGGY 1 cut(s) 307
BssECI CCNNGG 5 cut(s) 58, 341, 480, 1075, 1189
BssMI GATC 3 cut(s) 559, 726, 1123
BssNI GRCGYC 3 cut(s) 968, 993, 1194
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 884
Bst6I CTCTTC 5 cut(s) 696, 888, 1061, 1103, 1115
BstACI GRCGYC 3 cut(s) 968, 993, 1194
BstAFI CTTAAG 1 cut(s) 730
BstC8I GCNNGC 3 cut(s) 103, 403, 666
BstDEI CTNAG 3 cut(s) 432, 755, 861
BstENI CCTNNNNNAGG 1 cut(s) 159
BstF5I GGATG 3 cut(s) 220, 772, 1161
BstFNI CGCG 3 cut(s) 980, 1005, 1011
BstHHI GCGC 1 cut(s) 912
BstKTI GATC 3 cut(s) 562, 729, 1126
BstMAI GTCTC 4 cut(s) 378, 469, 743, 1054
BstMBI GATC 3 cut(s) 559, 726, 1123
BstMCI CGRYCG 1 cut(s) 1147
BstMWI GCNNNNNNNGC 3 cut(s) 866, 1031, 1185
BstSCI CCNGG 2 cut(s) 643, 1091
BstSFI CTRYAG 2 cut(s) 526, 739
BstSLI GKGCMC 2 cut(s) 276, 686
BstUI CGCG 3 cut(s) 980, 1005, 1011
BstV2I GAAGAC 2 cut(s) 1189, 1198
BstX2I RGATCY 1 cut(s) 726
BstYI RGATCY 1 cut(s) 726
BstZI CGGCCG 1 cut(s) 1144
Bsu15I ATCGAT 1 cut(s) 957
Bsu36I CCTNAGG 1 cut(s) 432
BsuRI GGCC 5 cut(s) 598, 1080, 1146, 1179, 1188
BsuTUI ATCGAT 1 cut(s) 957
BtsCI GGATG 3 cut(s) 220, 772, 1161
BtsI GCAGTG 1 cut(s) 919
BtsIMutI CAGTG 2 cut(s) 888, 919
Cac8I GCNNGC 3 cut(s) 103, 403, 666
CciI TCATGA 1 cut(s) 321
CfoI GCGC 1 cut(s) 912
Cfr10I RCCGGY 1 cut(s) 307
Cfr13I GGNCC 2 cut(s) 548, 1177
ClaI ATCGAT 1 cut(s) 957
CseI GACGC 6 cut(s) 969, 976, 994, 1000, 1001, 1183
Csp6I GTAC 4 cut(s) 165, 295, 311, 574
CspAI ACCGGT 1 cut(s) 307
CviAII CATG 3 cut(s) 263, 322, 563
CviQI GTAC 4 cut(s) 165, 295, 311, 574
DdeI CTNAG 3 cut(s) 432, 755, 861
DpnI GATC 3 cut(s) 561, 728, 1125
DpnII GATC 3 cut(s) 559, 726, 1123
EaeI YGGCCR 1 cut(s) 1144
EagI CGGCCG 1 cut(s) 1144
Eam1104I CTCTTC 5 cut(s) 696, 888, 1061, 1103, 1115
EarI CTCTTC 5 cut(s) 696, 888, 1061, 1103, 1115
EciI GGCGGA 2 cut(s) 884, 1103
Ecl136II GAGCTC 1 cut(s) 286
EclXI CGGCCG 1 cut(s) 1144
Eco130I CCWWGG 1 cut(s) 58
Eco147I AGGCCT 1 cut(s) 598
Eco24I GRGCYC 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 469
Eco32I GATATC 2 cut(s) 6, 136
Eco47I GGWCC 1 cut(s) 548
Eco52I CGGCCG 1 cut(s) 1144
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 912
Eco81I CCTNAGG 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 479
EcoICRI GAGCTC 1 cut(s) 286
EcoNI CCTNNNNNAGG 1 cut(s) 159
EcoRV GATATC 2 cut(s) 6, 136
EcoT14I CCWWGG 1 cut(s) 58
EcoT22I ATGCAT 1 cut(s) 938
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 58
Esp3I CGTCTC 1 cut(s) 1054
FaeI CATG 3 cut(s) 266, 325, 566
FaiI YATR 7 cut(s) 264, 323, 546, 564, 624, 807, 934
FatI CATG 3 cut(s) 262, 321, 562
Fnu4HI GCNGC 1 cut(s) 1089
FokI GGATG 3 cut(s) 207, 779, 1148
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 1089
FspBI CTAG 5 cut(s) 18, 78, 197, 665, 878
GlaI GCGC 1 cut(s) 911
GluI GCNGC 1 cut(s) 1089
GsuI CTGGAG 1 cut(s) 855
HaeIII GGCC 5 cut(s) 598, 1080, 1146, 1179, 1188
HapII CCGG 6 cut(s) 308, 380, 645, 795, 1093, 1147
HgaI GACGC 6 cut(s) 969, 976, 994, 1000, 1001, 1183
HhaI GCGC 1 cut(s) 912
Hin1I GRCGYC 3 cut(s) 968, 993, 1194
Hin1II CATG 3 cut(s) 266, 325, 566
Hin6I GCGC 1 cut(s) 910
HinP1I GCGC 1 cut(s) 910
HincII GTYRAC 1 cut(s) 1015
HindII GTYRAC 1 cut(s) 1015
HinfI GANTC 6 cut(s) 93, 128, 383, 395, 751, 847
HpaII CCGG 6 cut(s) 308, 380, 645, 795, 1093, 1147
HphI GGTGA 3 cut(s) 809, 1051, 1204
Hpy166II GTNNAC 3 cut(s) 721, 772, 1015
Hpy188I TCNGA 4 cut(s) 133, 756, 1123, 1159
Hpy188III TCNNGA 2 cut(s) 224, 322
Hpy8I GTNNAC 3 cut(s) 721, 772, 1015
Hpy99I CGWCG 9 cut(s) 970, 995, 1031, 1034, 1046, 1049, 1187, 1205, 1223
HpyAV CCTTC 4 cut(s) 149, 286, 994, 1078
HpyCH4III ACNGT 1 cut(s) 884
HpyCH4V TGCA 6 cut(s) 38, 88, 405, 528, 904, 936
HpyF10VI GCNNNNNNNGC 3 cut(s) 866, 1031, 1185
HpyF3I CTNAG 3 cut(s) 432, 755, 861
Hsp92I GRCGYC 3 cut(s) 968, 993, 1194
Hsp92II CATG 3 cut(s) 266, 325, 566
HspAI GCGC 1 cut(s) 910
KpnI GGTACC 2 cut(s) 168, 314
Kzo9I GATC 3 cut(s) 559, 726, 1123
LguI GCTCTTC 1 cut(s) 1103
LmnI GCTCC 2 cut(s) 283, 802
LweI GCATC 1 cut(s) 75
MaeI CTAG 5 cut(s) 18, 78, 197, 665, 878
MaeIII GTNAC 1 cut(s) 145
MalI GATC 3 cut(s) 561, 728, 1125
MboI GATC 3 cut(s) 559, 726, 1123
MflI RGATCY 1 cut(s) 726
MhlI GDGCHC 4 cut(s) 216, 276, 288, 686
MluCI AATT 3 cut(s) 183, 760, 947
MlyI GAGTC 3 cut(s) 102, 389, 745
MmeI TCCRAC 1 cut(s) 1182
Mph1103I ATGCAT 1 cut(s) 938
MseI TTAA 4 cut(s) 201, 731, 941, 1172
MspCI CTTAAG 1 cut(s) 730
MspI CCGG 6 cut(s) 308, 380, 645, 795, 1093, 1147
MspR9I CCNGG 2 cut(s) 645, 1093
MvnI CGCG 3 cut(s) 980, 1005, 1011
MwoI GCNNNNNNNGC 3 cut(s) 866, 1031, 1185
NciI CCSGG 2 cut(s) 645, 1093
NdeII GATC 3 cut(s) 559, 726, 1123
NheI GCTAGC 1 cut(s) 664
NlaIII CATG 3 cut(s) 266, 325, 566
NlaIV GGNNCC 5 cut(s) 166, 312, 493, 550, 683
NmeAIII GCCGAG 4 cut(s) 322, 694, 1056, 1170
NsiI ATGCAT 1 cut(s) 938
PagI TCATGA 1 cut(s) 321
PceI AGGCCT 1 cut(s) 598
PciSI GCTCTTC 1 cut(s) 1103
PcsI WCGNNNNNNNCGW 3 cut(s) 1038, 1191, 1197
PfeI GAWTC 3 cut(s) 128, 383, 847
PinAI ACCGGT 1 cut(s) 307
PkrI GCNGC 1 cut(s) 1090
PleI GAGTC 3 cut(s) 101, 389, 745
PpsI GAGTC 3 cut(s) 101, 389, 745
Psp124BI GAGCTC 1 cut(s) 288
PspN4I GGNNCC 5 cut(s) 166, 312, 493, 550, 683
PspPI GGNCC 2 cut(s) 548, 1177
PstI CTGCAG 1 cut(s) 530
PsuI RGATCY 1 cut(s) 726
RsaI GTAC 4 cut(s) 166, 296, 312, 575
RsaNI GTAC 4 cut(s) 165, 295, 311, 574
SacI GAGCTC 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 1103
SaqAI TTAA 4 cut(s) 201, 731, 941, 1172
SatI GCNGC 1 cut(s) 1089
Sau3AI GATC 3 cut(s) 559, 726, 1123
Sau96I GGNCC 2 cut(s) 548, 1177
SchI GAGTC 3 cut(s) 102, 389, 745
ScrFI CCNGG 2 cut(s) 645, 1093
SduI GDGCHC 4 cut(s) 216, 276, 288, 686
SfaNI GCATC 1 cut(s) 75
SfcI CTRYAG 2 cut(s) 526, 739
SfiI GGCCNNNNNGGCC 1 cut(s) 1185
SinI GGWCC 1 cut(s) 548
SmlI CTYRAG 4 cut(s) 176, 299, 655, 730
SmoI CTYRAG 4 cut(s) 176, 299, 655, 730
Sse9I AATT 3 cut(s) 183, 760, 947
SseBI AGGCCT 1 cut(s) 598
SsiI CCGC 6 cut(s) 869, 978, 1003, 1009, 1089, 1114
SspMI CTAG 5 cut(s) 18, 78, 197, 665, 878
SstI GAGCTC 1 cut(s) 288
StuI AGGCCT 1 cut(s) 598
StyD4I CCNGG 2 cut(s) 643, 1091
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 884
TaqI TCGA 3 cut(s) 957, 965, 990
TaqII GACCGA 1 cut(s) 376
TasI AATT 3 cut(s) 183, 760, 947
TauI GCSGC 1 cut(s) 1091
TfiI GAWTC 3 cut(s) 128, 383, 847
Tru1I TTAA 4 cut(s) 201, 731, 941, 1172
Tru9I TTAA 4 cut(s) 201, 731, 941, 1172
TscAI CASTG 2 cut(s) 895, 919
TspDTI ATGAA 2 cut(s) 604, 647
TspGWI ACGGA 1 cut(s) 1207
TspRI CASTG 2 cut(s) 895, 919
Vha464I CTTAAG 1 cut(s) 730
VpaK11BI GGWCC 1 cut(s) 548
XagI CCTNNNNNAGG 1 cut(s) 159
XapI RAATTY 1 cut(s) 947
XspI CTAG 5 cut(s) 18, 78, 197, 665, 878
Zsp2I ATGCAT 1 cut(s) 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.