FvH4_4g29751

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001120
Physical Location & Seq
Reverse (-)
29763830 .. 29764840
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g29751.t1

Sequence Viewer

Length: 936 bp
ATGTCAATACCTCAAACTCCTCCTTCTCTTCCCCAGTACTTACAAGAAAGTGACCTCAGCCATGAAACCAGAGACCTAATATCCACGCTACCTAAAGAGAAAGGTTTCATGTCATCAGATCAATATCTTTATCAGTACCAGGGCTTTTGGTACCCAACTGAGTATATCCAGGGAGTTTTAGCCTCCCAGAAACACTTTGAAGCCCTAGATACCGATATCCTTCTTGCTTGTCCTCCCAAATCAGGCGCCACTTGGCTCAAGGCCATTTTGTTTTCCCTAGTGAAACGAATTCATCTCTACATCAAGAACCAGATCCCTGCCCTCACCTCCTATAACCCTCCTCCCAGGGTCTTTTCAACTCACTTACCACTCGGATCTCTACCGCAATCTGTCAAACACTCTGCTTGCAAGGTTGTCTATCTGTGTAGAAACCCTAAGGACATAGTAGTCTCATTTTGGAACTTTGCAAACAAGATGAGGGCCAAGACTAGGGGAACCACTTCACTTGAAGAAGTGTTAGAAAGTATCTGCAGCGGTAAGTCTCCGTTTGGACCTTTTTGGGATCATGTGCTGGATTACTGGAAGGCGAGCTTGGAAAGGCCGGCGCCTGAAAGGGTGTTCTTCCTCAAGTATGAGGAAATGAAAGAACAACCAGGTCTGCACTTGAGGAAGCTAGCTGAGTTCTTGGGGTGCCCATTTTCACCAGAAGAAGAGGCGCAGGGAGTGGTGGACAATATCTTAAGGCTGTGTAGTTTTGAGAATATGAGCAATTTGGATGTGAACAAAAACGGGAAACACTCGAATGGGGTGGCGAACAGTGCATTCTTTCGGAAAGGGGAGGCCGGAGACTGGAAGAATTGTTTGACAGCCGAGATGGTGGAGAAGCTAGACTCTGTCATTGAAGAGAAGTTGCAAGGCTCTGGATTCCAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

312

Amino Acids

35.34

Weight (kDa)

6.71

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 70 - 308 2.4e-65 Sulfotransferase domain
Sulfotransfer_3 PF13469 137 - 234 1.3e-06 Sulfotransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 446
Acc65I GGTACC 1 cut(s) 150
AccB1I GGYRCC 4 cut(s) 150, 245, 604, 690
AciI CCGC 2 cut(s) 383, 534
AclWI GGATC 3 cut(s) 307, 382, 570
AcsI RAATTY 1 cut(s) 288
AcyI GRCGYC 2 cut(s) 246, 605
AfaI GTAC 3 cut(s) 38, 137, 152
AfiI CCNNNNNNNGG 3 cut(s) 242, 489, 849
AflII CTTAAG 1 cut(s) 739
AgsI TTSAA 4 cut(s) 200, 357, 509, 902
AjnI CCWGG 4 cut(s) 138, 168, 344, 652
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 4 cut(s) 591, 673, 677, 886
AluI AGCT 4 cut(s) 591, 673, 677, 886
Alw26I GTCTC 4 cut(s) 66, 454, 546, 840
AlwI GGATC 3 cut(s) 307, 382, 570
AoxI GGCC 4 cut(s) 261, 480, 599, 840
ApeKI GCWGC 1 cut(s) 531
ApoI RAATTY 1 cut(s) 288
Asp700I GAANNNNTTC 2 cut(s) 104, 499
Asp718I GGTACC 1 cut(s) 150
AspLEI GCGC 3 cut(s) 248, 607, 718
AspS9I GGNCC 2 cut(s) 480, 551
AsuHPI GGTGA 2 cut(s) 316, 693
AsuNHI GCTAGC 1 cut(s) 673
AvaII GGWCC 1 cut(s) 551
AxyI CCTNAGG 1 cut(s) 435
BaeGI GKGCMC 1 cut(s) 695
BanI GGYRCC 4 cut(s) 150, 245, 604, 690
BbvCI CCTCAGC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 543
BccI CCATC 1 cut(s) 868
BciT130I CCWGG 4 cut(s) 140, 170, 346, 654
BcoDI GTCTC 4 cut(s) 66, 454, 546, 840
BfaI CTAG 5 cut(s) 206, 278, 489, 674, 887
BfmI CTRYAG 1 cut(s) 529
BfoI RGCGCY 2 cut(s) 249, 608
BfrI CTTAAG 1 cut(s) 739
BisI GCNGC 1 cut(s) 532
BlsI GCNGC 1 cut(s) 533
BmcAI AGTACT 1 cut(s) 38
Bme1390I CCNGG 4 cut(s) 140, 170, 346, 654
Bme18I GGWCC 1 cut(s) 551
BmgT120I GGNCC 2 cut(s) 480, 551
BmiI GGNNCC 5 cut(s) 152, 247, 496, 606, 692
BmrFI CCNGG 4 cut(s) 140, 170, 346, 654
BmrI ACTGGG 1 cut(s) 28
BmtI GCTAGC 1 cut(s) 677
BmuI ACTGGG 1 cut(s) 28
Bpu10I CCTNAGC 1 cut(s) 56
BpuEI CTTGAG 3 cut(s) 242, 611, 685
BsaBI GATNNNNATC 1 cut(s) 123
BsaHI GRCGYC 2 cut(s) 246, 605
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 4 cut(s) 139, 169, 344, 345
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 489, 849
Bse118I RCCGGY 1 cut(s) 601
Bse1I ACTGG 3 cut(s) 34, 584, 854
Bse21I CCTNAGG 1 cut(s) 435
Bse8I GATNNNNATC 1 cut(s) 123
BseBI CCWGG 4 cut(s) 140, 170, 346, 654
BseDI CCNNGG 4 cut(s) 139, 169, 344, 345
BseGI GGATG 1 cut(s) 781
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 3 cut(s) 242, 489, 849
BseMII CTCAG 3 cut(s) 70, 150, 669
BseNI ACTGG 3 cut(s) 34, 584, 854
BseRI GAGGAG 2 cut(s) 9, 330
BseSI GKGCMC 1 cut(s) 695
BseXI GCAGC 1 cut(s) 543
BsgI GTGCAG 1 cut(s) 644
BshFI GGCC 4 cut(s) 263, 482, 601, 842
BshNI GGYRCC 4 cut(s) 150, 245, 604, 690
BsiSI CCGG 2 cut(s) 602, 843
BslI CCNNNNNNNGG 3 cut(s) 242, 489, 849
BsmAI GTCTC 4 cut(s) 66, 454, 546, 840
BsmI GAATGC 1 cut(s) 821
BsnI GGCC 4 cut(s) 263, 482, 601, 842
Bso31I GGTCTC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 695
Bsp143I GATC 4 cut(s) 118, 312, 374, 562
BspACI CCGC 2 cut(s) 383, 534
BspANI GGCC 4 cut(s) 263, 482, 601, 842
BspCNI CTCAG 3 cut(s) 69, 151, 670
BspLI GGNNCC 5 cut(s) 152, 247, 496, 606, 692
BspMAI CTGCAG 1 cut(s) 533
BspOI GCTAGC 1 cut(s) 677
BspPI GGATC 3 cut(s) 307, 382, 570
BspT107I GGYRCC 4 cut(s) 150, 245, 604, 690
BspTI CTTAAG 1 cut(s) 739
BspTNI GGTCTC 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 601
BsrI ACTGG 3 cut(s) 34, 584, 854
BssAI RCCGGY 1 cut(s) 601
BssECI CCNNGG 4 cut(s) 139, 169, 344, 345
BssMI GATC 4 cut(s) 118, 312, 374, 562
BssNI GRCGYC 2 cut(s) 246, 605
Bst2UI CCWGG 4 cut(s) 140, 170, 346, 654
Bst4CI ACNGT 1 cut(s) 818
Bst6I CTCTTC 3 cut(s) 33, 705, 897
BstACI GRCGYC 2 cut(s) 246, 605
BstAFI CTTAAG 1 cut(s) 739
BstC8I GCNNGC 4 cut(s) 406, 589, 603, 675
BstDEI CTNAG 4 cut(s) 56, 159, 435, 678
BstF5I GGATG 1 cut(s) 781
BstH2I RGCGCY 2 cut(s) 249, 608
BstHHI GCGC 3 cut(s) 248, 607, 718
BstKTI GATC 4 cut(s) 121, 315, 377, 565
BstMAI GTCTC 4 cut(s) 66, 454, 546, 840
BstMBI GATC 4 cut(s) 118, 312, 374, 562
BstMWI GCNNNNNNNGC 1 cut(s) 818
BstNI CCWGG 4 cut(s) 140, 170, 346, 654
BstSCI CCNGG 4 cut(s) 138, 168, 344, 652
BstSFI CTRYAG 1 cut(s) 529
BstSLI GKGCMC 1 cut(s) 695
BstV1I GCAGC 1 cut(s) 543
BstX2I RGATCY 2 cut(s) 312, 374
BstYI RGATCY 2 cut(s) 312, 374
Bsu36I CCTNAGG 1 cut(s) 435
BsuRI GGCC 4 cut(s) 263, 482, 601, 842
BtsCI GGATG 1 cut(s) 781
BtsIMutI CAGTG 1 cut(s) 823
Cac8I GCNNGC 4 cut(s) 406, 589, 603, 675
CfoI GCGC 3 cut(s) 248, 607, 718
Cfr10I RCCGGY 1 cut(s) 601
Cfr13I GGNCC 2 cut(s) 480, 551
CsiI ACCWGGT 1 cut(s) 652
Csp6I GTAC 3 cut(s) 37, 136, 151
CspCI CAANNNNNGTGG 2 cut(s) 487, 522
CviAII CATG 3 cut(s) 62, 109, 566
CviQI GTAC 3 cut(s) 37, 136, 151
DdeI CTNAG 4 cut(s) 56, 159, 435, 678
DinI GGCGCC 2 cut(s) 247, 606
DpnI GATC 4 cut(s) 120, 314, 376, 564
DpnII GATC 4 cut(s) 118, 312, 374, 562
DrdI GACNNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 446
Eam1104I CTCTTC 3 cut(s) 33, 705, 897
EarI CTCTTC 3 cut(s) 33, 705, 897
Eco31I GGTCTC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 551
Eco81I CCTNAGG 1 cut(s) 435
EcoRI GAATTC 1 cut(s) 288
EcoRII CCWGG 4 cut(s) 138, 168, 344, 652
EcoRV GATATC 1 cut(s) 217
EgeI GGCGCC 2 cut(s) 247, 606
EheI GGCGCC 2 cut(s) 247, 606
FaeI CATG 3 cut(s) 65, 112, 569
FaiI YATR 8 cut(s) 63, 110, 165, 333, 443, 567, 633, 764
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FatI CATG 3 cut(s) 61, 108, 565
Fnu4HI GCNGC 1 cut(s) 532
FokI GGATG 1 cut(s) 788
Fsp4HI GCNGC 1 cut(s) 532
FspBI CTAG 5 cut(s) 206, 278, 489, 674, 887
GlaI GCGC 3 cut(s) 247, 606, 717
GluI GCNGC 1 cut(s) 532
HaeII RGCGCY 2 cut(s) 249, 608
HaeIII GGCC 4 cut(s) 263, 482, 601, 842
HapII CCGG 2 cut(s) 602, 843
HhaI GCGC 3 cut(s) 248, 607, 718
Hin1I GRCGYC 2 cut(s) 246, 605
Hin1II CATG 3 cut(s) 65, 112, 569
Hin6I GCGC 3 cut(s) 246, 605, 716
HinP1I GCGC 3 cut(s) 246, 605, 716
HinfI GANTC 2 cut(s) 890, 924
HpaII CCGG 2 cut(s) 602, 843
HphI GGTGA 2 cut(s) 316, 693
Hpy166II GTNNAC 2 cut(s) 730, 781
Hpy188I TCNGA 3 cut(s) 118, 374, 831
Hpy188III TCNNGA 2 cut(s) 304, 921
Hpy8I GTNNAC 2 cut(s) 730, 781
HpyAV CCTTC 3 cut(s) 33, 230, 577
HpyCH4III ACNGT 1 cut(s) 818
HpyCH4V TGCA 6 cut(s) 408, 467, 531, 661, 821, 913
HpyF10VI GCNNNNNNNGC 1 cut(s) 818
HpyF3I CTNAG 4 cut(s) 56, 159, 435, 678
Hsp92I GRCGYC 2 cut(s) 246, 605
Hsp92II CATG 3 cut(s) 65, 112, 569
HspAI GCGC 3 cut(s) 246, 605, 716
KasI GGCGCC 2 cut(s) 245, 604
KpnI GGTACC 1 cut(s) 154
KroI GCCGGC 1 cut(s) 601
KroNI GCCGGC 1 cut(s) 603
Kzo9I GATC 4 cut(s) 118, 312, 374, 562
Lsp1109I GCAGC 1 cut(s) 543
MabI ACCWGGT 1 cut(s) 652
MaeI CTAG 5 cut(s) 206, 278, 489, 674, 887
MaeIII GTNAC 1 cut(s) 50
MalI GATC 4 cut(s) 120, 314, 376, 564
MboI GATC 4 cut(s) 118, 312, 374, 562
MboII GAAGA 7 cut(s) 20, 521, 613, 719, 722, 865, 914
MflI RGATCY 2 cut(s) 312, 374
MhlI GDGCHC 1 cut(s) 695
MluCI AATT 4 cut(s) 288, 769, 856, 929
Mly113I GGCGCC 2 cut(s) 246, 605
MlyI GAGTC 1 cut(s) 884
MroNI GCCGGC 1 cut(s) 601
MroXI GAANNNNTTC 2 cut(s) 104, 499
MseI TTAA 1 cut(s) 740
MslI CAYNNNNRTG 1 cut(s) 801
MspA1I CMGCKG 1 cut(s) 534
MspCI CTTAAG 1 cut(s) 739
MspI CCGG 2 cut(s) 602, 843
MspR9I CCNGG 4 cut(s) 140, 170, 346, 654
Mva1269I GAATGC 1 cut(s) 821
MvaI CCWGG 4 cut(s) 140, 170, 346, 654
MwoI GCNNNNNNNGC 1 cut(s) 818
NaeI GCCGGC 1 cut(s) 603
NarI GGCGCC 2 cut(s) 246, 605
NdeII GATC 4 cut(s) 118, 312, 374, 562
NgoMIV GCCGGC 1 cut(s) 601
NheI GCTAGC 1 cut(s) 673
NlaIII CATG 3 cut(s) 65, 112, 569
NlaIV GGNNCC 5 cut(s) 152, 247, 496, 606, 692
NmeAIII GCCGAG 1 cut(s) 895
NmuCI GTSAC 1 cut(s) 50
PasI CCCWGGG 1 cut(s) 345
PctI GAATGC 1 cut(s) 821
PdiI GCCGGC 1 cut(s) 603
PdmI GAANNNNTTC 2 cut(s) 104, 499
PfeI GAWTC 1 cut(s) 924
PflFI GACNNNGTC 1 cut(s) 893
PkrI GCNGC 1 cut(s) 533
PleI GAGTC 1 cut(s) 884
PluTI GGCGCC 2 cut(s) 249, 608
PpsI GAGTC 1 cut(s) 884
Psp6I CCWGG 4 cut(s) 138, 168, 344, 652
PspGI CCWGG 4 cut(s) 138, 168, 344, 652
PspN4I GGNNCC 5 cut(s) 152, 247, 496, 606, 692
PspPI GGNCC 2 cut(s) 480, 551
PstI CTGCAG 1 cut(s) 533
PsuI RGATCY 2 cut(s) 312, 374
PsyI GACNNNGTC 1 cut(s) 893
RsaI GTAC 3 cut(s) 38, 137, 152
RsaNI GTAC 3 cut(s) 37, 136, 151
RseI CAYNNNNRTG 1 cut(s) 801
SaqAI TTAA 1 cut(s) 740
SatI GCNGC 1 cut(s) 532
Sau3AI GATC 4 cut(s) 118, 312, 374, 562
Sau96I GGNCC 2 cut(s) 480, 551
ScaI AGTACT 1 cut(s) 38
SchI GAGTC 1 cut(s) 884
ScrFI CCNGG 4 cut(s) 140, 170, 346, 654
SduI GDGCHC 1 cut(s) 695
SexAI ACCWGGT 1 cut(s) 652
SfcI CTRYAG 1 cut(s) 529
SfoI GGCGCC 2 cut(s) 247, 606
SinI GGWCC 1 cut(s) 551
SmiMI CAYNNNNRTG 1 cut(s) 801
SmlI CTYRAG 4 cut(s) 257, 626, 664, 739
SmoI CTYRAG 4 cut(s) 257, 626, 664, 739
Sse9I AATT 4 cut(s) 288, 769, 856, 929
SsiI CCGC 2 cut(s) 383, 534
SspDI GGCGCC 2 cut(s) 245, 604
SspMI CTAG 5 cut(s) 206, 278, 489, 674, 887
StyD4I CCNGG 4 cut(s) 138, 168, 344, 652
TaaI ACNGT 1 cut(s) 818
TaqI TCGA 1 cut(s) 800
TasI AATT 4 cut(s) 288, 769, 856, 929
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 1 cut(s) 924
Tru1I TTAA 1 cut(s) 740
Tru9I TTAA 1 cut(s) 740
TscAI CASTG 1 cut(s) 823
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 1 cut(s) 531
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 4 cut(s) 78, 97, 281, 656
TspGWI ACGGA 1 cut(s) 534
TspRI CASTG 1 cut(s) 823
Tth111I GACNNNGTC 1 cut(s) 893
Vha464I CTTAAG 1 cut(s) 739
VpaK11BI GGWCC 1 cut(s) 551
XapI RAATTY 1 cut(s) 288
XmnI GAANNNNTTC 2 cut(s) 104, 499
XspI CTAG 5 cut(s) 206, 278, 489, 674, 887
ZrmI AGTACT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.