Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001120

Physical Location & Seq

Genomic Coordinates Forward (+)

11454980 .. 11455981

Gene Structure 1002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00227360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTCACTACCTCAAACTCCTCCTTCTCTTCCCCAATACTTGCAAGAAATTGAGCTCAGCCAAGAAACCAGAGACCTGATATCCACGCTACCTACTGAGAAAGCTTTGATTTCAGCTAATTTGCATCAGTACAAGGGTTTTTGGTTCCCCACTAGGTATATCCAAGGAGTTTTAGCCTTCCAAAAACACTTTCAAGCCCAAGATACTGATATCCTTCTTACTACTACTCCCAAATCAGGCACCACTTGGCTCAAGGCAATTCTGTTTGCCCTAGTAAACCGAGTGCACTATCATCCAGACCCTCAGAACCAAGACCACCCCTTGCTCACAAACAATTCTCATGCTCTTGTGCCCTCCTTCGAGTCTAATCTGTACTTTAAGAAACAGATTCCTGACCTCACCTCCTATGCCCCTCCCAGGCTCTTTTCAACTCACTTACCACTAGGGTCTCTGCCACAATCTGTTAAAGAGTCTGCTTGCAAAGTCGTCTATCTGTGTAGAAACCCTAAGGACATAATAGTTTCACTTTGGCACTACACAAACAGATTGAGACACAGGAGTATGGGAACCAATTCACTTGAAGAAGTATTGGAATACTTCTGCAGGGGAGTGAGTCCATTTGGACCTTTTTGGGATCATGTGTCGGGCTACTGGAAGGGGAGCTTGGAAAGGCCTGAAACGGTGTTCTTCATCAAATATGAGGAAATGAAAGAACAACCTGGTCTGCACTTGAGGAGGCTAGCTGAGTTCTTAGGGTGCCCATTCTCACCAGAAGAAGAGGCACAGGGAGTGGTGGACAATATCTTAAGGCTGTGTAGTTTTGAGAATTTGAGCAATTTGGATGTGAACAAAACAGGGAAATTATCGACAGGGGTGGAGCATAGTGCATTCTTTCGGCGAGGGGAGGCGGGAGACTGGAGGAATTGTTTGACAGCTGAGATGGTGGAACAGCTAGACCGTATCAATGAAGAGAAGTTGCAAGGTTCTGGATTAAAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

333

Amino Acids

38.19

Weight (kDa)

6.46

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	68 - 330	1.1e-75	Sulfotransferase domain
Sulfotransfer_3	PF13469	161 - 256	5.3e-06	Sulfotransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28170 AT2G03760 AT2G27570 AT3G45070 AT3G45070 AT3G45070 AT3G45080 AT5G43690
fragaria_vesca	FvH4_4g29330 FvH4_4g29331 FvH4_4g29332 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29751
malus_domestica	MD16G1055600.v1.1 MD16G1055700.v1.1 MD16G1055800.v1.1 MD16G1056100.v1.1
prunus_persica	Prupe.1G293200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437381 RchiOBHm_Chr4g0437391 RchiOBHm_Chr7g0233341
rosa_laevigata	RLG00000006442 RLG00000013880
rosa_multiflora	Rmu_sc0004759.1_g000009 Rmu_sc0004759.1_g000010 Rmu_sc0010228.1_g000003 Rmu_sc0010228.1_g000005
rosa_roxburghii	Rroxscaffold_3G00227360 Rroxscaffold_5G00378530 Rroxscaffold_5G00378560 Rroxscaffold_5G00378630
rosa_rugosa	Rorug04G0300400 Rorug04G0300500 Rorug04G0300600 Rorug04G0301000
rosa_samantha	Rh4AG355300 Rh4BG365000 Rh4BG365100 Rh4BG365400 Rh4BG365500 Rh4CG379200 Rh4CG379300 Rh4CG379600 Rh4CG379700 Rh4DG359000 Rh4DG359100 Rh4DG359300 Rh5DG503800 Rh7CG455200
rosa_wichuraiana	Rw0G022450 Rw4G031140 Rw4G031170 Rw4G031180 Rw7G035860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	239, 756
AciI	CCGC	1 cut(s)	908
AclWI	GGATC	1 cut(s)	642
AcsI	RAATTY	2 cut(s)	826, 995
AfaI	GTAC	2 cut(s)	131, 374
AfiI	CCNNNNNNNGG	2 cut(s)	236, 417
AflII	CTTAAG	1 cut(s)	805
AgsI	TTSAA	3 cut(s)	194, 429, 581
AjnI	CCWGG	2 cut(s)	416, 718
AjuI	GAANNNNNNNTTGG	4 cut(s)	174, 206, 647, 679
AluBI	AGCT	7 cut(s)	55, 104, 116, 663, 743, 935, 952
AluI	AGCT	7 cut(s)	55, 104, 116, 663, 743, 935, 952
Alw21I	GWGCWC	2 cut(s)	57, 288
Alw26I	GTCTC	4 cut(s)	66, 453, 544, 906
Alw44I	GTGCAC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	642
AoxI	GGCC	1 cut(s)	671
ApaLI	GTGCAC	1 cut(s)	284
ApoI	RAATTY	2 cut(s)	826, 995
Asp700I	GAANNNNTTC	1 cut(s)	571
AspS9I	GGNCC	1 cut(s)	623
AsuHPI	GGTGA	2 cut(s)	391, 759
AsuNHI	GCTAGC	1 cut(s)	739
AvaII	GGWCC	1 cut(s)	623
AxyI	CCTNAGG	1 cut(s)	507
BaeGI	GKGCMC	3 cut(s)	288, 354, 761
BanI	GGYRCC	2 cut(s)	239, 756
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	2 cut(s)	57, 288
BccI	CCATC	1 cut(s)	934
BciT130I	CCWGG	2 cut(s)	418, 720
BcoDI	GTCTC	4 cut(s)	66, 453, 544, 906
BfaI	CTAG	5 cut(s)	153, 272, 443, 740, 953
BfmI	CTRYAG	1 cut(s)	601
BfrI	CTTAAG	1 cut(s)	805
BlpI	GCTNAGC	1 cut(s)	56
Bme1390I	CCNGG	2 cut(s)	418, 720
Bme18I	GGWCC	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	623
BmiI	GGNNCC	4 cut(s)	146, 241, 568, 758
BmrFI	CCNGG	2 cut(s)	418, 720
BmsI	GCATC	1 cut(s)	133
BmtI	GCTAGC	1 cut(s)	743
BpmI	CTGGAG	1 cut(s)	937
Bpu1102I	GCTNAGC	1 cut(s)	56
BpuEI	CTTGAG	2 cut(s)	236, 751
BsaI	GGTCTC	2 cut(s)	66, 453
BsaJI	CCNNGG	2 cut(s)	163, 416
BsaXI	ACNNNNNCTCC	6 cut(s)	211, 241, 386, 416, 910, 940
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 417
Bse1I	ACTGG	2 cut(s)	656, 920
Bse21I	CCTNAGG	1 cut(s)	507
BseBI	CCWGG	2 cut(s)	418, 720
BseDI	CCNNGG	2 cut(s)	163, 416
BseGI	GGATG	2 cut(s)	292, 847
BseLI	CCNNNNNNNGG	2 cut(s)	236, 417
BseMII	CTCAG	5 cut(s)	70, 87, 317, 735, 927
BseNI	ACTGG	2 cut(s)	656, 920
BseRI	GAGGAG	2 cut(s)	9, 748
BseSI	GKGCMC	3 cut(s)	288, 354, 761
BsgI	GTGCAG	1 cut(s)	710
BshFI	GGCC	1 cut(s)	673
BshNI	GGYRCC	2 cut(s)	239, 756
BsiHKAI	GWGCWC	2 cut(s)	57, 288
BslI	CCNNNNNNNGG	2 cut(s)	236, 417
BsmAI	GTCTC	4 cut(s)	66, 453, 544, 906
BsmI	GAATGC	1 cut(s)	887
BsnI	GGCC	1 cut(s)	673
Bso31I	GGTCTC	2 cut(s)	66, 453
Bsp1286I	GDGCHC	4 cut(s)	57, 288, 354, 761
Bsp143I	GATC	1 cut(s)	634
Bsp1720I	GCTNAGC	1 cut(s)	56
BspACI	CCGC	1 cut(s)	908
BspANI	GGCC	1 cut(s)	673
BspCNI	CTCAG	5 cut(s)	69, 88, 316, 736, 928
BspLI	GGNNCC	4 cut(s)	146, 241, 568, 758
BspMAI	CTGCAG	1 cut(s)	605
BspOI	GCTAGC	1 cut(s)	743
BspPI	GGATC	1 cut(s)	642
BspT107I	GGYRCC	2 cut(s)	239, 756
BspTI	CTTAAG	1 cut(s)	805
BspTNI	GGTCTC	2 cut(s)	66, 453
BsrI	ACTGG	2 cut(s)	656, 920
BssECI	CCNNGG	2 cut(s)	163, 416
BssMI	GATC	1 cut(s)	634
BssT1I	CCWWGG	1 cut(s)	163
Bst2UI	CCWGG	2 cut(s)	418, 720
Bst4CI	ACNGT	2 cut(s)	682, 959
Bst6I	CTCTTC	3 cut(s)	33, 771, 963
BstAFI	CTTAAG	1 cut(s)	805
BstC8I	GCNNGC	2 cut(s)	478, 741
BstDEI	CTNAG	7 cut(s)	56, 96, 303, 507, 744, 751, 936
BstF5I	GGATG	2 cut(s)	292, 847
BstKTI	GATC	1 cut(s)	637
BstMAI	GTCTC	4 cut(s)	66, 453, 544, 906
BstMBI	GATC	1 cut(s)	634
BstNI	CCWGG	2 cut(s)	418, 720
BstSCI	CCNGG	2 cut(s)	416, 718
BstSFI	CTRYAG	1 cut(s)	601
BstSLI	GKGCMC	3 cut(s)	288, 354, 761
Bsu36I	CCTNAGG	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	673
BtsCI	GGATG	2 cut(s)	292, 847
Cac8I	GCNNGC	2 cut(s)	478, 741
Cfr13I	GGNCC	1 cut(s)	623
CsiI	ACCWGGT	1 cut(s)	718
Csp6I	GTAC	2 cut(s)	130, 373
CviAII	CATG	2 cut(s)	341, 638
CviQI	GTAC	2 cut(s)	130, 373
DdeI	CTNAG	7 cut(s)	56, 96, 303, 507, 744, 751, 936
DpnI	GATC	1 cut(s)	636
DpnII	GATC	1 cut(s)	634
Eam1104I	CTCTTC	3 cut(s)	33, 771, 963
EarI	CTCTTC	3 cut(s)	33, 771, 963
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	163
Eco147I	AGGCCT	1 cut(s)	673
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	2 cut(s)	66, 453
Eco32I	GATATC	2 cut(s)	81, 211
Eco47I	GGWCC	1 cut(s)	623
Eco53kI	GAGCTC	1 cut(s)	55
Eco81I	CCTNAGG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	416, 718
EcoRV	GATATC	2 cut(s)	81, 211
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	2 cut(s)	344, 641
FaiI	YATR	8 cut(s)	159, 342, 408, 515, 563, 639, 699, 882
FalI	AAGNNNNNCTT	2 cut(s)	647, 679
FatI	CATG	2 cut(s)	340, 637
FauI	CCCGC	1 cut(s)	901
FokI	GGATG	2 cut(s)	279, 854
FriOI	GRGCYC	1 cut(s)	57
FspBI	CTAG	5 cut(s)	153, 272, 443, 740, 953
GsuI	CTGGAG	1 cut(s)	937
HaeIII	GGCC	1 cut(s)	673
Hin1II	CATG	2 cut(s)	344, 641
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	4 cut(s)	362, 388, 470, 613
HphI	GGTGA	2 cut(s)	391, 759
Hpy166II	GTNNAC	4 cut(s)	277, 286, 796, 847
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	3 cut(s)	296, 392, 987
Hpy8I	GTNNAC	4 cut(s)	277, 286, 796, 847
HpyAV	CCTTC	5 cut(s)	33, 187, 224, 367, 649
HpyCH4III	ACNGT	2 cut(s)	682, 959
HpyCH4V	TGCA	8 cut(s)	43, 124, 286, 480, 603, 727, 887, 979
HpyF3I	CTNAG	7 cut(s)	56, 96, 303, 507, 744, 751, 936
Hsp92II	CATG	2 cut(s)	344, 641
Kzo9I	GATC	1 cut(s)	634
LmnI	GCTCC	2 cut(s)	660, 877
LweI	GCATC	1 cut(s)	133
MabI	ACCWGGT	1 cut(s)	718
MaeI	CTAG	5 cut(s)	153, 272, 443, 740, 953
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	636
MboI	GATC	1 cut(s)	634
MboII	GAAGA	6 cut(s)	20, 593, 679, 785, 788, 980
MhlI	GDGCHC	4 cut(s)	57, 288, 354, 761
MlyI	GAGTC	3 cut(s)	371, 479, 622
MroXI	GAANNNNTTC	1 cut(s)	571
MseI	TTAA	4 cut(s)	378, 465, 806, 992
MspA1I	CMGCKG	1 cut(s)	935
MspCI	CTTAAG	1 cut(s)	805
MspR9I	CCNGG	2 cut(s)	418, 720
Mva1269I	GAATGC	1 cut(s)	887
MvaI	CCWGG	2 cut(s)	418, 720
NdeII	GATC	1 cut(s)	634
NheI	GCTAGC	1 cut(s)	739
NlaIII	CATG	2 cut(s)	344, 641
NlaIV	GGNNCC	4 cut(s)	146, 241, 568, 758
NmuCI	GTSAC	1 cut(s)	3
PceI	AGGCCT	1 cut(s)	673
PctI	GAATGC	1 cut(s)	887
PdmI	GAANNNNTTC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	388
PleI	GAGTC	3 cut(s)	370, 478, 621
PpsI	GAGTC	3 cut(s)	370, 478, 621
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	2 cut(s)	416, 718
PspGI	CCWGG	2 cut(s)	416, 718
PspN4I	GGNNCC	4 cut(s)	146, 241, 568, 758
PspPI	GGNCC	1 cut(s)	623
PstI	CTGCAG	1 cut(s)	605
PvuII	CAGCTG	1 cut(s)	935
RsaI	GTAC	2 cut(s)	131, 374
RsaNI	GTAC	2 cut(s)	130, 373
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	4 cut(s)	378, 465, 806, 992
Sau3AI	GATC	1 cut(s)	634
Sau96I	GGNCC	1 cut(s)	623
SchI	GAGTC	3 cut(s)	371, 479, 622
ScrFI	CCNGG	2 cut(s)	418, 720
SduI	GDGCHC	4 cut(s)	57, 288, 354, 761
SexAI	ACCWGGT	1 cut(s)	718
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	601
SinI	GGWCC	1 cut(s)	623
SmlI	CTYRAG	3 cut(s)	251, 730, 805
SmoI	CTYRAG	3 cut(s)	251, 730, 805
SseBI	AGGCCT	1 cut(s)	673
SsiI	CCGC	1 cut(s)	908
SspMI	CTAG	5 cut(s)	153, 272, 443, 740, 953
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	673
StyD4I	CCNGG	2 cut(s)	416, 718
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	2 cut(s)	682, 959
TaqI	TCGA	2 cut(s)	360, 866
TatI	WGTACW	2 cut(s)	129, 372
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	4 cut(s)	378, 465, 806, 992
Tru9I	TTAA	4 cut(s)	378, 465, 806, 992
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	679, 722, 981
Vha464I	CTTAAG	1 cut(s)	805
VneI	GTGCAC	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	623
XapI	RAATTY	2 cut(s)	826, 995
XmnI	GAANNNNTTC	1 cut(s)	571
XspI	CTAG	5 cut(s)	153, 272, 443, 740, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.