Rorug04G0301000

Belongs to the sulfotransferase 1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
47571736 .. 47572360
625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0301000.1

Sequence Viewer

Length: 270 bp
ATGTCTGCAATGCTGAAATTGTCATTTGTGTTCTCTGTTCTAACCATTGCTCTTTTCTTATGTTTCAATACAAGCACTGAGGCCAGGGAAGTCAAAAGTGAAAAGGAGCGGGAGGCAAACGACAGAAAGTGGTGCATTGCTAAGCCTTCTACTCCTGATGCTCAGCTTGAAATGAATATCCAGTATGCCTGCGAAAGTCAAAGGTACCACAAGATTGACTGCTCCGCATTCCGACCGGGAAGTTCCTGTTACAACTTACAACCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

10.22

Weight (kDa)

7.6

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 204
AccBSI CCGCTC 1 cut(s) 109
AciI CCGC 2 cut(s) 109, 225
AfaI GTAC 1 cut(s) 206
AgsI TTSAA 2 cut(s) 67, 170
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
AoxI GGCC 1 cut(s) 81
Asp718I GGTACC 1 cut(s) 204
AsuC2I CCSGG 1 cut(s) 237
BanI GGYRCC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 85
BcnI CCSGG 1 cut(s) 237
BlpI GCTNAGC 2 cut(s) 141, 162
Bme1390I CCNGG 2 cut(s) 85, 237
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 2 cut(s) 85, 237
BmsI GCATC 1 cut(s) 148
Bpu1102I GCTNAGC 2 cut(s) 141, 162
BpuMI CCSGG 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 3 cut(s) 15, 45, 135
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 84
BseMI GCAATG 3 cut(s) 15, 45, 135
BseMII CTCAG 2 cut(s) 69, 176
BseNI ACTGG 1 cut(s) 181
Bsh1285I CGRYCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 83
BshNI GGYRCC 1 cut(s) 204
BsiEI CGRYCG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 236
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 1 cut(s) 83
Bsp1720I GCTNAGC 2 cut(s) 141, 162
BspACI CCGC 2 cut(s) 109, 225
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 2 cut(s) 70, 175
BspLI GGNNCC 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 204
BsrBI CCGCTC 1 cut(s) 109
BsrDI GCAATG 3 cut(s) 15, 45, 135
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 3 cut(s) 78, 141, 162
BstMCI CGRYCG 1 cut(s) 236
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 2 cut(s) 83, 235
BsuRI GGCC 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 205
CviJI RGCY 3 cut(s) 83, 145, 166
CviKI_1 RGCY 3 cut(s) 83, 145, 166
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 3 cut(s) 78, 141, 162
EcoRII CCWGG 1 cut(s) 83
FaiI YATR 2 cut(s) 61, 186
FauI CCCGC 1 cut(s) 102
HaeIII GGCC 1 cut(s) 83
HapII CCGG 1 cut(s) 236
HpaII CCGG 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 233
Hpy188III TCNNGA 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 8, 135
HpyF3I CTNAG 3 cut(s) 78, 141, 162
KpnI GGTACC 1 cut(s) 208
LmnI GCTCC 2 cut(s) 106, 227
LpnPI CCDG 7 cut(s) 70, 97, 168, 194, 202, 249, 259
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 248
MbiI CCGCTC 1 cut(s) 109
MluCI AATT 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 2 cut(s) 73, 106
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 2 cut(s) 85, 237
Mva1269I GAATGC 1 cut(s) 227
MvaI CCWGG 1 cut(s) 85
NciI CCSGG 1 cut(s) 237
NlaIV GGNNCC 1 cut(s) 206
PctI GAATGC 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 206
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
ScrFI CCNGG 2 cut(s) 85, 237
SetI ASST 2 cut(s) 168, 206
SfaNI GCATC 1 cut(s) 148
Sse9I AATT 1 cut(s) 17
SsiI CCGC 2 cut(s) 109, 225
StyD4I CCNGG 2 cut(s) 83, 235
TasI AATT 1 cut(s) 17
TscAI CASTG 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.