Rorug04G0300400

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001120
Physical Location & Seq
Forward (+)
47514882 .. 47518590
3709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0300400.1

Sequence Viewer

Length: 1131 bp
ATGGCTATTCTTGACAGCTTTTTTCGGTGTTTTGGCGGGTCAAAGCCAATAGAAAAGGCTACTACTCTTCAGCCTCTGGATTTACATGATGACTTTAATGCAGGCCTGGTTTTGAGATCAACATCAGATGAACGACCGATTCACCACACCGTAAAAATACGATCCTTTTCTTTGCTAAGAAATTTAATGGATAGATGCGAAGTAGGGGACTTTAAAGCTGGAGGATACAGATGGAAACTAGTGCTCTGCCCGAATGGAAACAAGAAGAGGAATGTGGAAGGCCACATCTCTCTCTACTTGGAAATGGCTGAAGAAAAACCAATTGAGCCTGACCAGATCGTAGCAATTGATTTTAGATTGTTTTTGCTTAATCAGAAGAAGAGCAACTACTTGGTTCTAGAGGATGCCAATAAAAAGGAGAAGAAGTATGTCTTTTATAGGACGATTGTCGGTGGTTCGGCTGGTTTCGATCAGTTTCTTCCTCTTGAAGAATTTACTGACGCCTCCAACGGTTATCTAATTGATGACACTTGTGAATTTGGCGCGGAGGTCTTTGTTTCTAAACAAGTAAGAACAGGAAAAGGAGAGTGTCTAGTGTCTATGATCAAAGATGTCACCAAGTACAAGCGTGCTTGGAGCATTTCCAACTTTTCACAGTTGGCTGATGAACGCTATACCTCAAATCCGTTCTTTTTGACAGACCACAAATATTGCGAATGGAATCTACGACTCTATCCCAATGGAAATAAGTTGGGAAATGGTAGTGGTCATATTTCTGTTTATGTGGAATTGGCCAATTTAAAATCTCTTCCTCCAGGCTCTAAAATATTGGCAGAGTTTACCATACAAATCCTAGATCAAATCAATGGGAAGCATCATTCTACCAAAGCGTGTAAACGCTGGTTCGGTGCCAGTCCCTCGACCTCGGTTTGGGGTTGGGCTCAATTCATCAGACAGGACTTGTTCAGTAACTCGGAGAAAGGATTGTTAGTGAGTGATTGTTGCATCGTGGAAACAGACATTACAATCTGTGCGATGCTTGATCTCCTGTGTAATGAGCTCGGGGTACAGGTTGTTATGTCCCCCCCGTTGCTTTCTTCCTTTATTAATTTGAACCGGGCGTGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

376

Amino Acids

42.51

Weight (kDa)

7.05

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 48 - 184 9.2e-27 MATH domain
MATH PF00917 54 - 186 2.8e-06 MATH domain
MATH_2 PF22486 211 - 341 6.6e-27 MATH domain
MATH PF00917 214 - 343 7.8e-09 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 908
AccII CGCG 1 cut(s) 545
AciI CCGC 2 cut(s) 36, 545
AclWI GGATC 1 cut(s) 156
AcoI YGGCCR 1 cut(s) 792
AcsI RAATTY 3 cut(s) 181, 491, 536
AcuI CTGAAG 2 cut(s) 53, 330
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 2 cut(s) 623, 1068
AfiI CCNNNNNNNGG 2 cut(s) 930, 1123
AgsI TTSAA 2 cut(s) 488, 1114
AhlI ACTAGT 1 cut(s) 238
AjnI CCWGG 2 cut(s) 105, 814
AluBI AGCT 3 cut(s) 18, 218, 1060
AluI AGCT 3 cut(s) 18, 218, 1060
Alw21I GWGCWC 2 cut(s) 246, 1062
AlwI GGATC 1 cut(s) 156
AlwNI CAGNNNCTG 1 cut(s) 76
Ama87I CYCGRG 1 cut(s) 1061
AoxI GGCC 3 cut(s) 103, 280, 792
ApoI RAATTY 3 cut(s) 181, 491, 536
AseI ATTAAT 1 cut(s) 1107
AspLEI GCGC 1 cut(s) 545
AsuC2I CCSGG 1 cut(s) 1118
AsuHPI GGTGA 2 cut(s) 134, 607
AvaI CYCGRG 1 cut(s) 1061
BalI TGGCCA 1 cut(s) 794
BanI GGYRCC 1 cut(s) 908
BanII GRGCYC 2 cut(s) 943, 1062
BarI GAAGNNNNNNTAC 2 cut(s) 371, 403
Bbv12I GWGCWC 2 cut(s) 246, 1062
BccI CCATC 1 cut(s) 225
BciT130I CCWGG 2 cut(s) 107, 816
BciVI GTATCC 1 cut(s) 218
BclI TGATCA 1 cut(s) 603
BcnI CCSGG 1 cut(s) 1118
BcuI ACTAGT 1 cut(s) 238
BfaI CTAG 4 cut(s) 239, 398, 593, 854
BfuI GTATCC 1 cut(s) 218
Bme1390I CCNGG 3 cut(s) 107, 816, 1118
BmeT110I CYCGRG 1 cut(s) 1061
BmiI GGNNCC 1 cut(s) 910
BmrFI CCNGG 3 cut(s) 107, 816, 1118
BmsI GCATC 5 cut(s) 185, 394, 883, 1014, 1026
BoxI GACNNNNGTC 1 cut(s) 446
BpmI CTGGAG 2 cut(s) 240, 798
BpuMI CCSGG 1 cut(s) 1118
BsaBI GATNNNNATC 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 924
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 2 cut(s) 930, 1123
Bse1I ACTGG 1 cut(s) 912
Bse8I GATNNNNATC 1 cut(s) 121
BseBI CCWGG 2 cut(s) 107, 816
BseDI CCNNGG 1 cut(s) 924
BseGI GGATG 1 cut(s) 409
BseJI GATNNNNATC 1 cut(s) 121
BseLI CCNNNNNNNGG 2 cut(s) 930, 1123
BseNI ACTGG 1 cut(s) 912
Bsh1236I CGCG 1 cut(s) 545
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 3 cut(s) 105, 282, 794
BshNI GGYRCC 1 cut(s) 908
BsiEI CGRYCG 1 cut(s) 137
BsiHKAI GWGCWC 2 cut(s) 246, 1062
BsiHKCI CYCGRG 1 cut(s) 1061
BsiSI CCGG 1 cut(s) 1117
BslFI GGGAC 3 cut(s) 221, 900, 1066
BslI CCNNNNNNNGG 2 cut(s) 930, 1123
BsmFI GGGAC 3 cut(s) 221, 900, 1066
BsnI GGCC 3 cut(s) 105, 282, 794
BsoBI CYCGRG 1 cut(s) 1061
Bsp1286I GDGCHC 3 cut(s) 246, 943, 1062
Bsp143I GATC 7 cut(s) 116, 161, 336, 469, 603, 856, 1042
BspACI CCGC 2 cut(s) 36, 545
BspANI GGCC 3 cut(s) 105, 282, 794
BspFNI CGCG 1 cut(s) 545
BspLI GGNNCC 1 cut(s) 910
BspPI GGATC 1 cut(s) 156
BspQI GCTCTTC 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 908
BsrI ACTGG 1 cut(s) 912
BssECI CCNNGG 1 cut(s) 924
BssMI GATC 7 cut(s) 116, 161, 336, 469, 603, 856, 1042
BssNI GRCGYC 1 cut(s) 501
Bst2UI CCWGG 2 cut(s) 107, 816
Bst4CI ACNGT 3 cut(s) 151, 512, 657
Bst6I CTCTTC 4 cut(s) 72, 260, 374, 813
BstACI GRCGYC 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 103, 630
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 409
BstFNI CGCG 1 cut(s) 545
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 7 cut(s) 119, 164, 339, 472, 606, 859, 1045
BstMBI GATC 7 cut(s) 116, 161, 336, 469, 603, 856, 1042
BstMCI CGRYCG 1 cut(s) 137
BstNI CCWGG 2 cut(s) 107, 816
BstPAI GACNNNNGTC 1 cut(s) 446
BstSCI CCNGG 3 cut(s) 105, 814, 1116
BstUI CGCG 1 cut(s) 545
BsuI GTATCC 1 cut(s) 218
BsuRI GGCC 3 cut(s) 105, 282, 794
BtgZI GCGATG 1 cut(s) 1049
BtsCI GGATG 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 103, 630
CaiI CAGNNNCTG 1 cut(s) 76
CfoI GCGC 1 cut(s) 545
CseI GACGC 1 cut(s) 509
Csp6I GTAC 2 cut(s) 622, 1067
CspCI CAANNNNNGTGG 2 cut(s) 692, 727
CviAII CATG 1 cut(s) 86
CviQI GTAC 2 cut(s) 622, 1067
DdeI CTNAG 1 cut(s) 176
DpnI GATC 7 cut(s) 118, 163, 338, 471, 605, 858, 1044
DpnII GATC 7 cut(s) 116, 161, 336, 469, 603, 856, 1042
DraI TTTAAA 2 cut(s) 214, 801
EaeI YGGCCR 1 cut(s) 792
Eam1104I CTCTTC 4 cut(s) 72, 260, 374, 813
EarI CTCTTC 4 cut(s) 72, 260, 374, 813
Ecl136II GAGCTC 1 cut(s) 1060
Eco147I AGGCCT 1 cut(s) 105
Eco24I GRGCYC 2 cut(s) 943, 1062
Eco53kI GAGCTC 1 cut(s) 1060
Eco57I CTGAAG 2 cut(s) 53, 330
Eco88I CYCGRG 1 cut(s) 1061
EcoICRI GAGCTC 1 cut(s) 1060
EcoRII CCWGG 2 cut(s) 105, 814
EcoT38I GRGCYC 2 cut(s) 943, 1062
FaeI CATG 1 cut(s) 89
FaiI YATR 9 cut(s) 87, 429, 438, 602, 675, 771, 783, 845, 1079
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FaqI GGGAC 3 cut(s) 221, 900, 1066
FatI CATG 1 cut(s) 85
FauI CCCGC 1 cut(s) 29
FbaI TGATCA 1 cut(s) 603
FokI GGATG 1 cut(s) 416
FriOI GRGCYC 2 cut(s) 943, 1062
FspBI CTAG 4 cut(s) 239, 398, 593, 854
GlaI GCGC 1 cut(s) 544
GsuI CTGGAG 2 cut(s) 240, 798
HaeIII GGCC 3 cut(s) 105, 282, 794
HapII CCGG 1 cut(s) 1117
HgaI GACGC 1 cut(s) 509
HhaI GCGC 1 cut(s) 545
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HinfI GANTC 3 cut(s) 139, 721, 729
HpaII CCGG 1 cut(s) 1117
HphI GGTGA 2 cut(s) 134, 607
Hpy166II GTNNAC 2 cut(s) 840, 896
Hpy188I TCNGA 4 cut(s) 127, 375, 953, 976
Hpy188III TCNNGA 4 cut(s) 11, 77, 398, 485
Hpy8I GTNNAC 2 cut(s) 840, 896
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 3 cut(s) 151, 512, 657
HpyCH4V TGCA 2 cut(s) 101, 1005
HpyF3I CTNAG 1 cut(s) 176
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 1 cut(s) 543
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 7 cut(s) 116, 161, 336, 469, 603, 856, 1042
LguI GCTCTTC 1 cut(s) 374
LmnI GCTCC 1 cut(s) 636
LweI GCATC 5 cut(s) 185, 394, 883, 1014, 1026
MaeI CTAG 4 cut(s) 239, 398, 593, 854
MaeIII GTNAC 2 cut(s) 613, 968
MalI GATC 7 cut(s) 118, 163, 338, 471, 605, 858, 1044
MboI GATC 7 cut(s) 116, 161, 336, 469, 603, 856, 1042
MfeI CAATTG 2 cut(s) 321, 345
MhlI GDGCHC 3 cut(s) 246, 943, 1062
MlsI TGGCCA 1 cut(s) 794
MluNI TGGCCA 1 cut(s) 794
MlyI GAGTC 1 cut(s) 723
MmeI TCCRAC 2 cut(s) 531, 669
Mox20I TGGCCA 1 cut(s) 794
MscI TGGCCA 1 cut(s) 794
MseI TTAA 6 cut(s) 96, 185, 213, 369, 800, 1107
Msp20I TGGCCA 1 cut(s) 794
MspI CCGG 1 cut(s) 1117
MspR9I CCNGG 3 cut(s) 107, 816, 1118
MunI CAATTG 2 cut(s) 321, 345
MvaI CCWGG 2 cut(s) 107, 816
MvnI CGCG 1 cut(s) 545
NciI CCSGG 1 cut(s) 1118
NdeII GATC 7 cut(s) 116, 161, 336, 469, 603, 856, 1042
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 1 cut(s) 910
NmuCI GTSAC 1 cut(s) 613
PceI AGGCCT 1 cut(s) 105
PciSI GCTCTTC 1 cut(s) 374
PfeI GAWTC 2 cut(s) 139, 721
PleI GAGTC 1 cut(s) 723
PpsI GAGTC 1 cut(s) 723
PshAI GACNNNNGTC 1 cut(s) 446
PshBI ATTAAT 1 cut(s) 1107
Psp124BI GAGCTC 1 cut(s) 1062
Psp6I CCWGG 2 cut(s) 105, 814
PspGI CCWGG 2 cut(s) 105, 814
PspN4I GGNNCC 1 cut(s) 910
PstNI CAGNNNCTG 1 cut(s) 76
RsaI GTAC 2 cut(s) 623, 1068
RsaNI GTAC 2 cut(s) 622, 1067
SacI GAGCTC 1 cut(s) 1062
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 6 cut(s) 96, 185, 213, 369, 800, 1107
Sau3AI GATC 7 cut(s) 116, 161, 336, 469, 603, 856, 1042
SchI GAGTC 1 cut(s) 723
ScrFI CCNGG 3 cut(s) 107, 816, 1118
SduI GDGCHC 3 cut(s) 246, 943, 1062
SetI ASST 7 cut(s) 20, 220, 552, 680, 926, 1062, 1074
SfaNI GCATC 5 cut(s) 185, 394, 883, 1014, 1026
SpeI ACTAGT 1 cut(s) 238
SseBI AGGCCT 1 cut(s) 105
SsiI CCGC 2 cut(s) 36, 545
SspI AATATT 2 cut(s) 710, 828
SspMI CTAG 4 cut(s) 239, 398, 593, 854
SstI GAGCTC 1 cut(s) 1062
StuI AGGCCT 1 cut(s) 105
StyD4I CCNGG 3 cut(s) 105, 814, 1116
TaaI ACNGT 3 cut(s) 151, 512, 657
TaqI TCGA 2 cut(s) 468, 920
TaqII GACCGA 1 cut(s) 151
TatI WGTACW 1 cut(s) 621
TfiI GAWTC 2 cut(s) 139, 721
Tru1I TTAA 6 cut(s) 96, 185, 213, 369, 800, 1107
Tru9I TTAA 6 cut(s) 96, 185, 213, 369, 800, 1107
TseFI GTSAC 1 cut(s) 613
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 3 cut(s) 144, 681, 937
TspGWI ACGGA 1 cut(s) 675
VspI ATTAAT 1 cut(s) 1107
XapI RAATTY 3 cut(s) 181, 491, 536
XbaI TCTAGA 1 cut(s) 397
XspI CTAG 4 cut(s) 239, 398, 593, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.