Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001120

Physical Location & Seq

Genomic Coordinates Forward (+)

3935669 .. 3936537

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1055600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAAACACGTCAACCTCCTCCTCCTGTTGTTCCCCGATACTTGCAAGTTGAATGGAAACAAGCACCACTTGGCTCCAGGCACCGAGCGCACTATCTGGACCCTCAGCGACACCCTTTGCTCACAGAAAATCCTCATTCATGTTTTTCCAACCTCTCCTCCCTGGCCCGTCCAAGGCTCATTTCGACTCATCTACCGTATGTTTGTCTGCCGGATTCTGTCAAACATTCGGGTTGCAAAGTTGTTTACGTGTGTAGAGATCCCAAAGATGTGTTTGTTTCACTTTGGCATTTCTCGAACAAACTGAGGCCCGTGGGTAGTGGAACCATGTCACTTGACGAAGCGTTCGATAAGTTCTGCCGGGGAGTGAATACGTCCGGACCCTTTTGGGATCACGTACTAGGGTTTTGGAAGGAGAGCTTAAAGAGGCCTGAAAGTGCATTTTTCATCAAGTTTGAGGAAATGAAACAAGAGCCCGCTCTTCATCTGAGGAGGCTGGCCAAGTTCTTGGGGTGCCCATTTTCTCCGGAAGAAGAGACACATGGAGTTGTGGATGGTATCTTAAGGTTGTGTAGTTTTGAAAATTTAAGCAATTTGGATGTGAATAAAAGTGGGATATTGTCGTCTGGTATGGAGAAAAGCGCATTCTTTAGGAAAGGTGAAGTTGGAGATTGGATGAATTATTTGACCACTGAGATGGTGAAAAAACTAGACTCTATTACTCAAGAGAAGTTTCATGGTTCCGGATTAAAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

253

Amino Acids

28.81

Weight (kDa)

9.04

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	28 - 249	7.5e-59	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28170 AT2G03760 AT2G27570 AT3G45070 AT3G45070 AT3G45070 AT3G45080 AT5G43690
fragaria_vesca	FvH4_4g29330 FvH4_4g29331 FvH4_4g29332 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29751
malus_domestica	MD16G1055600.v1.1 MD16G1055700.v1.1 MD16G1055800.v1.1 MD16G1056100.v1.1
prunus_persica	Prupe.1G293200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437381 RchiOBHm_Chr4g0437391 RchiOBHm_Chr7g0233341
rosa_laevigata	RLG00000006442 RLG00000013880
rosa_multiflora	Rmu_sc0004759.1_g000009 Rmu_sc0004759.1_g000010 Rmu_sc0010228.1_g000003 Rmu_sc0010228.1_g000005
rosa_roxburghii	Rroxscaffold_3G00227360 Rroxscaffold_5G00378530 Rroxscaffold_5G00378560 Rroxscaffold_5G00378630
rosa_rugosa	Rorug04G0300400 Rorug04G0300500 Rorug04G0300600 Rorug04G0301000
rosa_samantha	Rh4AG355300 Rh4BG365000 Rh4BG365100 Rh4BG365400 Rh4BG365500 Rh4CG379200 Rh4CG379300 Rh4CG379600 Rh4CG379700 Rh4DG359000 Rh4DG359100 Rh4DG359300 Rh5DG503800 Rh7CG455200
rosa_wichuraiana	Rw0G022450 Rw4G031140 Rw4G031170 Rw4G031180 Rw7G035860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	81, 513
AccBSI	CCGCTC	1 cut(s)	479
AccIII	TCCGGA	3 cut(s)	377, 526, 743
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	2 cut(s)	254, 399
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	583
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	174
AflII	CTTAAG	1 cut(s)	562
AflIII	ACRYGT	2 cut(s)	8, 249
AgsI	TTSAA	2 cut(s)	53, 581
AjiI	CACGTC	1 cut(s)	11
AjnI	CCWGG	2 cut(s)	77, 162
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
AluBI	AGCT	1 cut(s)	420
AluI	AGCT	1 cut(s)	420
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	2 cut(s)	254, 399
Aor13HI	TCCGGA	3 cut(s)	377, 526, 743
AoxI	GGCC	4 cut(s)	165, 308, 428, 498
ApoI	RAATTY	1 cut(s)	583
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspLEI	GCGC	2 cut(s)	91, 644
AspS9I	GGNCC	4 cut(s)	100, 166, 309, 380
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	671, 712
AvaII	GGWCC	2 cut(s)	100, 380
BaeGI	GKGCMC	1 cut(s)	518
BalI	TGGCCA	1 cut(s)	500
BanI	GGYRCC	2 cut(s)	81, 513
BanII	GRGCYC	1 cut(s)	477
BbvCI	CCTCAGC	1 cut(s)	105
BccI	CCATC	2 cut(s)	548, 691
BciT130I	CCWGG	2 cut(s)	79, 164
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	3 cut(s)	401, 710, 757
BfrI	CTTAAG	1 cut(s)	562
Bme1390I	CCNGG	3 cut(s)	79, 164, 362
Bme18I	GGWCC	2 cut(s)	100, 380
BmgBI	CACGTC	1 cut(s)	11
BmgT120I	GGNCC	4 cut(s)	100, 166, 309, 380
BmiI	GGNNCC	7 cut(s)	76, 83, 102, 325, 382, 515, 742
BmrFI	CCNGG	3 cut(s)	79, 164, 362
BpmI	CTGGAG	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	708
BpuMI	CCSGG	1 cut(s)	362
BsaAI	YACGTR	2 cut(s)	250, 397
BsaJI	CCNNGG	4 cut(s)	162, 173, 312, 361
BsaWI	WCCGGW	3 cut(s)	377, 526, 743
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
BseAI	TCCGGA	3 cut(s)	377, 526, 743
BseBI	CCWGG	2 cut(s)	79, 164
BseDI	CCNNGG	4 cut(s)	162, 173, 312, 361
BseGI	GGATG	3 cut(s)	559, 604, 681
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	4 cut(s)	119, 296, 479, 684
BseRI	GAGGAG	4 cut(s)	9, 12, 148, 505
BseSI	GKGCMC	1 cut(s)	518
BshFI	GGCC	4 cut(s)	167, 310, 430, 500
BshNI	GGYRCC	2 cut(s)	81, 513
BsiSI	CCGG	5 cut(s)	212, 361, 378, 527, 744
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	530
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	4 cut(s)	167, 310, 430, 500
Bsp1286I	GDGCHC	2 cut(s)	477, 518
Bsp13I	TCCGGA	3 cut(s)	377, 526, 743
Bsp143I	GATC	2 cut(s)	259, 391
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	4 cut(s)	167, 310, 430, 500
BspCNI	CTCAG	4 cut(s)	118, 297, 480, 685
BspEI	TCCGGA	3 cut(s)	377, 526, 743
BspLI	GGNNCC	7 cut(s)	76, 83, 102, 325, 382, 515, 742
BspPI	GGATC	2 cut(s)	254, 399
BspQI	GCTCTTC	1 cut(s)	486
BspT107I	GGYRCC	2 cut(s)	81, 513
BspTI	CTTAAG	1 cut(s)	562
BsrBI	CCGCTC	1 cut(s)	479
BssECI	CCNNGG	4 cut(s)	162, 173, 312, 361
BssMI	GATC	2 cut(s)	259, 391
BssT1I	CCWWGG	1 cut(s)	173
Bst2UI	CCWGG	2 cut(s)	79, 164
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	2 cut(s)	486, 528
BstAFI	CTTAAG	1 cut(s)	562
BstBAI	YACGTR	2 cut(s)	250, 397
BstC8I	GCNNGC	2 cut(s)	477, 498
BstDEI	CTNAG	4 cut(s)	105, 305, 488, 693
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	3 cut(s)	559, 604, 681
BstHHI	GCGC	2 cut(s)	91, 644
BstKTI	GATC	2 cut(s)	262, 394
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	2 cut(s)	259, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	2 cut(s)	79, 164
BstSCI	CCNGG	3 cut(s)	77, 162, 360
BstSLI	GKGCMC	1 cut(s)	518
BstX2I	RGATCY	1 cut(s)	259
BstXI	CCANNNNNNTGG	2 cut(s)	508, 697
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	4 cut(s)	167, 310, 430, 500
BtgI	CCRYGG	1 cut(s)	312
BtrI	CACGTC	1 cut(s)	11
BtsCI	GGATG	3 cut(s)	559, 604, 681
BtsIMutI	CAGTG	1 cut(s)	690
Cac8I	GCNNGC	2 cut(s)	477, 498
CfoI	GCGC	2 cut(s)	91, 644
Cfr13I	GGNCC	4 cut(s)	100, 166, 309, 380
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	4 cut(s)	141, 328, 542, 737
CviJI	RGCY	9 cut(s)	75, 167, 178, 310, 420, 430, 475, 496, 500
CviKI_1	RGCY	9 cut(s)	75, 167, 178, 310, 420, 430, 475, 496, 500
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	4 cut(s)	105, 305, 488, 693
DpnI	GATC	2 cut(s)	261, 393
DpnII	GATC	2 cut(s)	259, 391
EaeI	YGGCCR	1 cut(s)	498
Eam1104I	CTCTTC	2 cut(s)	486, 528
EarI	CTCTTC	2 cut(s)	486, 528
Eco130I	CCWWGG	1 cut(s)	173
Eco147I	AGGCCT	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	2 cut(s)	100, 380
EcoRII	CCWGG	2 cut(s)	77, 162
EcoT14I	CCWWGG	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	4 cut(s)	144, 331, 545, 740
FaiI	YATR	6 cut(s)	142, 201, 329, 543, 632, 738
FalI	AAGNNNNNCTT	4 cut(s)	54, 86, 404, 436
FatI	CATG	4 cut(s)	140, 327, 541, 736
FauI	CCCGC	1 cut(s)	484
FokI	GGATG	3 cut(s)	566, 611, 688
FriOI	GRGCYC	1 cut(s)	477
FspBI	CTAG	3 cut(s)	401, 710, 757
GlaI	GCGC	2 cut(s)	90, 643
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	4 cut(s)	167, 310, 430, 500
HapII	CCGG	5 cut(s)	212, 361, 378, 527, 744
HhaI	GCGC	2 cut(s)	91, 644
Hin1II	CATG	4 cut(s)	144, 331, 545, 740
Hin6I	GCGC	2 cut(s)	89, 642
HinP1I	GCGC	2 cut(s)	89, 642
HincII	GTYRAC	1 cut(s)	14
HindII	GTYRAC	1 cut(s)	14
HinfI	GANTC	3 cut(s)	187, 215, 713
HpaII	CCGG	5 cut(s)	212, 361, 378, 527, 744
HphI	GGTGA	2 cut(s)	671, 712
Hpy166II	GTNNAC	2 cut(s)	14, 247
Hpy188I	TCNGA	1 cut(s)	489
Hpy188III	TCNNGA	6 cut(s)	98, 295, 378, 527, 725, 744
Hpy8I	GTNNAC	2 cut(s)	14, 247
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4IV	ACGT	4 cut(s)	10, 249, 374, 396
HpyCH4V	TGCA	3 cut(s)	46, 237, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	4 cut(s)	105, 305, 488, 693
HpySE526I	ACGT	4 cut(s)	10, 249, 374, 396
Hsp92II	CATG	4 cut(s)	144, 331, 545, 740
HspAI	GCGC	2 cut(s)	89, 642
Kpn2I	TCCGGA	3 cut(s)	377, 526, 743
Kzo9I	GATC	2 cut(s)	259, 391
LguI	GCTCTTC	1 cut(s)	486
LmnI	GCTCC	1 cut(s)	80
MaeI	CTAG	3 cut(s)	401, 710, 757
MaeII	ACGT	4 cut(s)	10, 249, 374, 396
MaeIII	GTNAC	1 cut(s)	330
MalI	GATC	2 cut(s)	261, 393
MbiI	CCGCTC	1 cut(s)	479
MboI	GATC	2 cut(s)	259, 391
MboII	GAAGA	3 cut(s)	473, 542, 545
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	477, 518
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	3 cut(s)	583, 592, 679
MluNI	TGGCCA	1 cut(s)	500
MlyI	GAGTC	2 cut(s)	181, 707
MmeI	TCCRAC	2 cut(s)	174, 646
Mox20I	TGGCCA	1 cut(s)	500
MroI	TCCGGA	3 cut(s)	377, 526, 743
MscI	TGGCCA	1 cut(s)	500
MseI	TTAA	4 cut(s)	422, 563, 587, 749
MslI	CAYNNNNRTG	1 cut(s)	695
Msp20I	TGGCCA	1 cut(s)	500
MspCI	CTTAAG	1 cut(s)	562
MspI	CCGG	5 cut(s)	212, 361, 378, 527, 744
MspR9I	CCNGG	3 cut(s)	79, 164, 362
Mva1269I	GAATGC	1 cut(s)	644
MvaI	CCWGG	2 cut(s)	79, 164
MwoI	GCNNNNNNNGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	2 cut(s)	259, 391
NlaIII	CATG	4 cut(s)	144, 331, 545, 740
NlaIV	GGNNCC	7 cut(s)	76, 83, 102, 325, 382, 515, 742
NmuCI	GTSAC	1 cut(s)	330
PceI	AGGCCT	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PctI	GAATGC	1 cut(s)	644
PfeI	GAWTC	1 cut(s)	215
PleI	GAGTC	2 cut(s)	181, 707
PpsI	GAGTC	2 cut(s)	181, 707
Ppu21I	YACGTR	2 cut(s)	250, 397
Psp6I	CCWGG	2 cut(s)	77, 162
PspGI	CCWGG	2 cut(s)	77, 162
PspN4I	GGNNCC	7 cut(s)	76, 83, 102, 325, 382, 515, 742
PspPI	GGNCC	4 cut(s)	100, 166, 309, 380
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	695
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	4 cut(s)	422, 563, 587, 749
Sau3AI	GATC	2 cut(s)	259, 391
Sau96I	GGNCC	4 cut(s)	100, 166, 309, 380
SchI	GAGTC	2 cut(s)	181, 707
ScrFI	CCNGG	3 cut(s)	79, 164, 362
SduI	GDGCHC	2 cut(s)	477, 518
SetI	ASST	9 cut(s)	13, 19, 156, 252, 377, 399, 422, 569, 661
SinI	GGWCC	2 cut(s)	100, 380
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	2 cut(s)	562, 723
SmoI	CTYRAG	2 cut(s)	562, 723
Sse9I	AATT	3 cut(s)	583, 592, 679
SseBI	AGGCCT	1 cut(s)	430
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	3 cut(s)	401, 710, 757
StuI	AGGCCT	1 cut(s)	430
StyD4I	CCNGG	3 cut(s)	77, 162, 360
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	198
TaiI	ACGT	4 cut(s)	13, 252, 377, 399
TaqI	TCGA	3 cut(s)	185, 296, 348
TasI	AATT	3 cut(s)	583, 592, 679
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	4 cut(s)	422, 563, 587, 749
Tru9I	TTAA	4 cut(s)	422, 563, 587, 749
TscAI	CASTG	1 cut(s)	697
TseFI	GTSAC	1 cut(s)	330
Tsp45I	GTSAC	1 cut(s)	330
TspDTI	ATGAA	7 cut(s)	17, 129, 436, 473, 479, 692, 725
TspRI	CASTG	1 cut(s)	697
Vha464I	CTTAAG	1 cut(s)	562
VpaK11BI	GGWCC	2 cut(s)	100, 380
XapI	RAATTY	1 cut(s)	583
XspI	CTAG	3 cut(s)	401, 710, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.