Rmu_sc0004759.1_g000009

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004759.1
OG0001120
Physical Location & Seq
Reverse (-)
32508 .. 33125
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004759.1_g000009.1.cds

Sequence Viewer

Length: 618 bp
atgtcaccatctcaaattccttcttctcttccccaacactcgcaacaatttgagctcagccaagaaaccagagacctaatatccacgcttcctgctgagaaaggattgatttcaggtcatttacatcagtaccagggcttttggtaccccactatgcatatccaaaaagttttagcctcccaaaaacactttcaagctcaagatactgatatccttctcgctactactcccaaatcaggcaccacttggctcaaggcaattctgtttgcgctagtaaagcgagtgcactatcatccagacccacaaaacatggaccaccctttgctcacaaacaaccctcatgttcttgtgcccttcttggagaataagcattccggtaagaaccagattcctgaccccacctcttacgctcctcccaggctcttttcaactcacttaccactagcgcatctgccacaatactctgcttgcaaggttgtctatctgtgtagaaaccctaaggacataatagtttcactttggcacttcacaaacagagtgagacacaagagtatgggaactattggcagtagcagtatggctgcagcatggctagcatgtcttagtttgcttgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

205

Amino Acids

23.11

Weight (kDa)

9.32

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 2 cut(s) 144, 239
AcsI RAATTY 1 cut(s) 15
AfaI GTAC 2 cut(s) 131, 146
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 2 cut(s) 194, 429
AjnI CCWGG 2 cut(s) 132, 416
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 2 cut(s) 55, 197
AluI AGCT 2 cut(s) 55, 197
Alw21I GWGCWC 2 cut(s) 57, 288
Alw26I GTCTC 2 cut(s) 66, 535
Alw44I GTGCAC 1 cut(s) 284
ApaLI GTGCAC 1 cut(s) 284
ApeKI GCWGC 2 cut(s) 581, 584
ApoI RAATTY 1 cut(s) 15
Asp718I GGTACC 1 cut(s) 144
AspLEI GCGC 2 cut(s) 271, 448
AspS9I GGNCC 1 cut(s) 313
AsuNHI GCTAGC 1 cut(s) 592
AvaII GGWCC 1 cut(s) 313
AxyI CCTNAGG 1 cut(s) 498
BaeGI GKGCMC 2 cut(s) 288, 354
BaeI ACNNNNGTAYC 2 cut(s) 113, 146
BanI GGYRCC 2 cut(s) 144, 239
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 2 cut(s) 57, 288
BbvI GCAGC 2 cut(s) 568, 596
BccI CCATC 1 cut(s) 16
BciT130I CCWGG 2 cut(s) 134, 418
BcoDI GTCTC 2 cut(s) 66, 535
BfaI CTAG 3 cut(s) 272, 443, 593
BfmI CTRYAG 1 cut(s) 582
BisI GCNGC 2 cut(s) 582, 585
BlpI GCTNAGC 1 cut(s) 56
BlsI GCNGC 2 cut(s) 583, 586
Bme1390I CCNGG 2 cut(s) 134, 418
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 146, 241
BmrFI CCNGG 2 cut(s) 134, 418
BmsI GCATC 1 cut(s) 457
BmtI GCTAGC 1 cut(s) 596
Bpu1102I GCTNAGC 1 cut(s) 56
BpuEI CTTGAG 2 cut(s) 183, 236
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 133, 416
BsaWI WCCGGW 1 cut(s) 374
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse21I CCTNAGG 1 cut(s) 498
BseBI CCWGG 2 cut(s) 134, 418
BseDI CCNNGG 2 cut(s) 133, 416
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 2 cut(s) 70, 87
BseRI GAGGAG 1 cut(s) 402
BseSI GKGCMC 2 cut(s) 288, 354
BseXI GCAGC 2 cut(s) 568, 596
BshNI GGYRCC 2 cut(s) 144, 239
BsiHKAI GWGCWC 2 cut(s) 57, 288
BsiSI CCGG 1 cut(s) 375
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 2 cut(s) 66, 535
BsmI GAATGC 1 cut(s) 370
Bso31I GGTCTC 1 cut(s) 66
Bsp1286I GDGCHC 3 cut(s) 57, 288, 354
Bsp1720I GCTNAGC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 69, 88
BspLI GGNNCC 2 cut(s) 146, 241
BspMAI CTGCAG 1 cut(s) 586
BspOI GCTAGC 1 cut(s) 596
BspT107I GGYRCC 2 cut(s) 144, 239
BspTNI GGTCTC 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 133, 416
Bst2UI CCWGG 2 cut(s) 134, 418
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 469, 594
BstDEI CTNAG 4 cut(s) 56, 96, 498, 602
BstF5I GGATG 1 cut(s) 292
BstHHI GCGC 2 cut(s) 271, 448
BstMAI GTCTC 2 cut(s) 66, 535
BstMWI GCNNNNNNNGC 2 cut(s) 277, 593
BstNI CCWGG 2 cut(s) 134, 418
BstNSI RCATGY 1 cut(s) 600
BstSCI CCNGG 2 cut(s) 132, 416
BstSFI CTRYAG 1 cut(s) 582
BstSLI GKGCMC 2 cut(s) 288, 354
BstV1I GCAGC 2 cut(s) 568, 596
Bsu36I CCTNAGG 1 cut(s) 498
BtsCI GGATG 1 cut(s) 292
Cac8I GCNNGC 2 cut(s) 469, 594
CfoI GCGC 2 cut(s) 271, 448
Cfr13I GGNCC 1 cut(s) 313
Csp6I GTAC 2 cut(s) 130, 145
CviAII CATG 4 cut(s) 310, 341, 588, 597
CviJI RGCY 9 cut(s) 55, 60, 138, 176, 197, 250, 421, 581, 592
CviKI_1 RGCY 9 cut(s) 55, 60, 138, 176, 197, 250, 421, 581, 592
CviQI GTAC 2 cut(s) 130, 145
DdeI CTNAG 4 cut(s) 56, 96, 498, 602
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 498
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 132, 416
EcoRV GATATC 1 cut(s) 211
EcoT22I ATGCAT 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 4 cut(s) 313, 344, 591, 600
FaiI YATR 9 cut(s) 155, 159, 311, 342, 506, 554, 578, 589, 598
FatI CATG 4 cut(s) 309, 340, 587, 596
Fnu4HI GCNGC 2 cut(s) 582, 585
FokI GGATG 1 cut(s) 279
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 2 cut(s) 582, 585
FspBI CTAG 3 cut(s) 272, 443, 593
GlaI GCGC 2 cut(s) 270, 447
GluI GCNGC 2 cut(s) 582, 585
HapII CCGG 1 cut(s) 375
HhaI GCGC 2 cut(s) 271, 448
Hin1II CATG 4 cut(s) 313, 344, 591, 600
Hin6I GCGC 2 cut(s) 269, 446
HinP1I GCGC 2 cut(s) 269, 446
HinfI GANTC 1 cut(s) 388
HpaII CCGG 1 cut(s) 375
Hpy166II GTNNAC 1 cut(s) 286
Hpy188III TCNNGA 3 cut(s) 200, 296, 392
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 3 cut(s) 30, 224, 364
HpyCH4V TGCA 4 cut(s) 157, 286, 471, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 277, 593
HpyF3I CTNAG 4 cut(s) 56, 96, 498, 602
Hsp92II CATG 4 cut(s) 313, 344, 591, 600
HspAI GCGC 2 cut(s) 269, 446
KpnI GGTACC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 2 cut(s) 568, 596
LweI GCATC 1 cut(s) 457
MaeI CTAG 3 cut(s) 272, 443, 593
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 2 cut(s) 15, 20
MhlI GDGCHC 3 cut(s) 57, 288, 354
MluCI AATT 3 cut(s) 15, 47, 258
MnlI CCTC 4 cut(s) 187, 348, 412, 423
Mph1103I ATGCAT 1 cut(s) 159
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 2 cut(s) 134, 418
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 2 cut(s) 134, 418
MwoI GCNNNNNNNGC 2 cut(s) 277, 593
NheI GCTAGC 1 cut(s) 592
NlaIII CATG 4 cut(s) 313, 344, 591, 600
NlaIV GGNNCC 2 cut(s) 146, 241
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 159
NspI RCATGY 1 cut(s) 600
PctI GAATGC 1 cut(s) 370
PfeI GAWTC 1 cut(s) 388
PkrI GCNGC 2 cut(s) 583, 586
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 132, 416
PspGI CCWGG 2 cut(s) 132, 416
PspN4I GGNNCC 2 cut(s) 146, 241
PspPI GGNCC 1 cut(s) 313
PstI CTGCAG 1 cut(s) 586
RsaI GTAC 2 cut(s) 131, 146
RsaNI GTAC 2 cut(s) 130, 145
SacI GAGCTC 1 cut(s) 57
SatI GCNGC 2 cut(s) 582, 585
Sau96I GGNCC 1 cut(s) 313
ScrFI CCNGG 2 cut(s) 134, 418
SduI GDGCHC 3 cut(s) 57, 288, 354
SetI ASST 6 cut(s) 57, 78, 118, 199, 404, 477
SfaNI GCATC 1 cut(s) 457
SfcI CTRYAG 1 cut(s) 582
SinI GGWCC 1 cut(s) 313
SmlI CTYRAG 2 cut(s) 198, 251
SmoI CTYRAG 2 cut(s) 198, 251
Sse9I AATT 3 cut(s) 15, 47, 258
SspMI CTAG 3 cut(s) 272, 443, 593
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 132, 416
TasI AATT 3 cut(s) 15, 47, 258
TfiI GAWTC 1 cut(s) 388
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 2 cut(s) 581, 584
Tsp45I GTSAC 1 cut(s) 3
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 1 cut(s) 15
XceI RCATGY 1 cut(s) 600
XspI CTAG 3 cut(s) 272, 443, 593
Zsp2I ATGCAT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.