RLG00000013880

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001120
Physical Location & Seq
Reverse (-)
43490061 .. 43491065
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013880

Sequence Viewer

Length: 1005 bp
ATGTCATCACTACCCCAAACTCCTTCGCTTCCCCAATACTTGCAAGAAAGTGAGCTCAGCCAAGAAACCAGAGACCTAATATCCACGCTACCTAAAGAGAAAGGTTTGATTTCAGATCATGTCCATCAGTACCAGGGCTTTTGGTACCCAACTAGGCAGATCCAGGGAGTTTTAGCCTCCCAAAAACACTTTCAAGCCCAAGATACTGATATCCTTCTTGCTACTCCTCCAAAATCAGGCGCCACTTGGCTCAAGGCAATTTTGTTTTCCCTAGTGAAACGAGTGCACTATCATCCTGATCCTGAGAACCAAGACCACCCTTTGCTCAAAAACAACCCACATTCTCTTGTGCCCTTCTTGGAGCTTGACCTCTACATCAAGAACCAGATCCCTGACCTCACCTCCTATAACCTTCCTCCCAGGGTCTTTTCAACTCACTTACCACTTGGATCTCTGCCGGAATCTGTCAAAGACTCTGCTTGCAAGGTTGTCTATCTGTGTAGAAACCCTAAGGACATAATAGTTTCAGTTTGGCACTTCGCAAACAAATTGAGGGCCAAGGGTAGGGGAACCACTTCACTTGAAGAAGTATTCGAAAGTTTCTGCAGCGGAGTGTATGCGTTTGGACCCCTTTGGGATCATGTGTTGGGTTATTGGAAGGAGAGCTTGGAAAGGCCTGAAACGGTATTCTTCATCAAATTTGAGGAAATGAAAGAACAACCCGGTTTGCACTTGAGGAGGCTAGCTGAGTTCTTGGGGTGCCCATTTTCACCAGAAGAAGAGGCACAGGGAGTGGTGGACAATATCTTGAGGCTGTGTAGTTTTGAAAATTTGAGCAATTTGGATGTGAACAAAAACGGGAAACTATCGACGGGGGTGCAGAATAGTGCTTTCTTTCGGCGAGGGAAGGCTGGAGACTGGAGGAATTGTTTGACAGCTGAGATGGTGGAAAAGCTAGACCGTATCACTGAAGAGAAGTTGCAAGGTTCTGGGTTCAAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

335

Amino Acids

38.09

Weight (kDa)

6.42

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 68 - 331 1.2e-75 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 3 cut(s) 144, 239, 759
AciI CCGC 1 cut(s) 609
AclWI GGATC 5 cut(s) 154, 293, 382, 457, 645
AcsI RAATTY 3 cut(s) 698, 829, 998
AcuI CTGAAG 1 cut(s) 990
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 2 cut(s) 131, 146
AfiI CCNNNNNNNGG 2 cut(s) 236, 564
AgsI TTSAA 5 cut(s) 194, 432, 584, 827, 997
AjnI CCWGG 3 cut(s) 132, 162, 419
AjuI GAANNNNNNNTTGG 4 cut(s) 174, 206, 650, 682
AluBI AGCT 6 cut(s) 55, 364, 666, 746, 938, 955
AluI AGCT 6 cut(s) 55, 364, 666, 746, 938, 955
Alw21I GWGCWC 2 cut(s) 57, 288
Alw26I GTCTC 2 cut(s) 66, 909
Alw44I GTGCAC 1 cut(s) 284
AlwI GGATC 5 cut(s) 154, 293, 382, 457, 645
AoxI GGCC 2 cut(s) 555, 674
ApaLI GTGCAC 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 606
ApoI RAATTY 3 cut(s) 698, 829, 998
Asp700I GAANNNNTTC 1 cut(s) 574
Asp718I GGTACC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 555, 626
AsuC2I CCSGG 1 cut(s) 723
AsuHPI GGTGA 2 cut(s) 391, 762
AsuII TTCGAA 1 cut(s) 594
AsuNHI GCTAGC 1 cut(s) 742
AvaII GGWCC 1 cut(s) 626
AxyI CCTNAGG 1 cut(s) 510
BaeGI GKGCMC 3 cut(s) 288, 354, 764
BanI GGYRCC 3 cut(s) 144, 239, 759
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 2 cut(s) 57, 288
BbvI GCAGC 1 cut(s) 618
BccI CCATC 2 cut(s) 132, 937
BcgI CGANNNNNNTGC 2 cut(s) 859, 893
BciT130I CCWGG 3 cut(s) 134, 164, 421
BcnI CCSGG 1 cut(s) 723
BcoDI GTCTC 2 cut(s) 66, 909
BfaI CTAG 5 cut(s) 153, 272, 743, 956, 1003
BfmI CTRYAG 1 cut(s) 604
BfoI RGCGCY 1 cut(s) 243
BisI GCNGC 1 cut(s) 607
BlpI GCTNAGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 608
Bme1390I CCNGG 4 cut(s) 134, 164, 421, 723
Bme18I GGWCC 1 cut(s) 626
BmgT120I GGNCC 2 cut(s) 555, 626
BmiI GGNNCC 5 cut(s) 146, 241, 571, 628, 761
BmrFI CCNGG 4 cut(s) 134, 164, 421, 723
BmtI GCTAGC 1 cut(s) 746
BpmI CTGGAG 2 cut(s) 933, 940
Bpu1102I GCTNAGC 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 594
BpuEI CTTGAG 3 cut(s) 236, 754, 829
BpuMI CCSGG 1 cut(s) 723
BsaHI GRCGYC 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 5 cut(s) 133, 163, 419, 420, 558
BsaXI ACNNNNNCTCC 4 cut(s) 386, 416, 913, 943
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 564
Bse1I ACTGG 1 cut(s) 923
Bse21I CCTNAGG 1 cut(s) 510
BseBI CCWGG 3 cut(s) 134, 164, 421
BseDI CCNNGG 5 cut(s) 133, 163, 419, 420, 558
BseGI GGATG 2 cut(s) 292, 850
BseLI CCNNNNNNNGG 2 cut(s) 236, 564
BseMII CTCAG 4 cut(s) 70, 294, 738, 930
BseNI ACTGG 1 cut(s) 923
BseRI GAGGAG 2 cut(s) 216, 751
BseSI GKGCMC 3 cut(s) 288, 354, 764
BseXI GCAGC 1 cut(s) 618
BsgI GTGCAG 1 cut(s) 899
BshFI GGCC 2 cut(s) 557, 676
BshNI GGYRCC 3 cut(s) 144, 239, 759
BsiHKAI GWGCWC 2 cut(s) 57, 288
BsiSI CCGG 2 cut(s) 458, 723
BslI CCNNNNNNNGG 2 cut(s) 236, 564
BsmAI GTCTC 2 cut(s) 66, 909
BsnI GGCC 2 cut(s) 557, 676
Bso31I GGTCTC 1 cut(s) 66
Bsp119I TTCGAA 1 cut(s) 594
Bsp1286I GDGCHC 4 cut(s) 57, 288, 354, 764
Bsp143I GATC 6 cut(s) 115, 159, 298, 387, 449, 637
Bsp1720I GCTNAGC 1 cut(s) 56
BspACI CCGC 1 cut(s) 609
BspANI GGCC 2 cut(s) 557, 676
BspCNI CTCAG 4 cut(s) 69, 295, 739, 931
BspLI GGNNCC 5 cut(s) 146, 241, 571, 628, 761
BspMAI CTGCAG 1 cut(s) 608
BspOI GCTAGC 1 cut(s) 746
BspPI GGATC 5 cut(s) 154, 293, 382, 457, 645
BspT104I TTCGAA 1 cut(s) 594
BspT107I GGYRCC 3 cut(s) 144, 239, 759
BspTNI GGTCTC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 923
BssECI CCNNGG 5 cut(s) 133, 163, 419, 420, 558
BssMI GATC 6 cut(s) 115, 159, 298, 387, 449, 637
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 558
Bst2UI CCWGG 3 cut(s) 134, 164, 421
Bst4CI ACNGT 2 cut(s) 685, 962
Bst6I CTCTTC 2 cut(s) 774, 966
BstACI GRCGYC 1 cut(s) 240
BstBI TTCGAA 1 cut(s) 594
BstC8I GCNNGC 2 cut(s) 481, 744
BstDEI CTNAG 5 cut(s) 56, 303, 510, 747, 939
BstF5I GGATG 2 cut(s) 292, 850
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 6 cut(s) 118, 162, 301, 390, 452, 640
BstMAI GTCTC 2 cut(s) 66, 909
BstMBI GATC 6 cut(s) 115, 159, 298, 387, 449, 637
BstNI CCWGG 3 cut(s) 134, 164, 421
BstSCI CCNGG 4 cut(s) 132, 162, 419, 721
BstSFI CTRYAG 1 cut(s) 604
BstSLI GKGCMC 3 cut(s) 288, 354, 764
BstV1I GCAGC 1 cut(s) 618
BstX2I RGATCY 3 cut(s) 159, 387, 449
BstYI RGATCY 3 cut(s) 159, 387, 449
Bsu36I CCTNAGG 1 cut(s) 510
BsuRI GGCC 2 cut(s) 557, 676
BtsCI GGATG 2 cut(s) 292, 850
BtsIMutI CAGTG 1 cut(s) 966
Cac8I GCNNGC 2 cut(s) 481, 744
CfoI GCGC 1 cut(s) 242
Cfr13I GGNCC 2 cut(s) 555, 626
Csp6I GTAC 2 cut(s) 130, 145
CspCI CAANNNNNGTGG 2 cut(s) 562, 597
CviAII CATG 2 cut(s) 119, 641
CviQI GTAC 2 cut(s) 130, 145
DdeI CTNAG 5 cut(s) 56, 303, 510, 747, 939
DinI GGCGCC 1 cut(s) 241
DpnI GATC 6 cut(s) 117, 161, 300, 389, 451, 639
DpnII GATC 6 cut(s) 115, 159, 298, 387, 449, 637
Eam1104I CTCTTC 2 cut(s) 774, 966
EarI CTCTTC 2 cut(s) 774, 966
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 558
Eco147I AGGCCT 1 cut(s) 676
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 626
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 990
Eco81I CCTNAGG 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 3 cut(s) 132, 162, 419
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 558
EcoT38I GRGCYC 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 241
EheI GGCGCC 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 558
FaeI CATG 2 cut(s) 122, 644
FaiI YATR 5 cut(s) 120, 408, 518, 618, 642
FalI AAGNNNNNCTT 2 cut(s) 650, 682
FatI CATG 2 cut(s) 118, 640
Fnu4HI GCNGC 1 cut(s) 607
FokI GGATG 2 cut(s) 279, 857
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 607
FspBI CTAG 5 cut(s) 153, 272, 743, 956, 1003
GlaI GCGC 1 cut(s) 241
GluI GCNGC 1 cut(s) 607
GsuI CTGGAG 2 cut(s) 933, 940
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 2 cut(s) 557, 676
HapII CCGG 2 cut(s) 458, 723
HhaI GCGC 1 cut(s) 242
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 2 cut(s) 122, 644
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HinfI GANTC 2 cut(s) 461, 473
HpaII CCGG 2 cut(s) 458, 723
HphI GGTGA 2 cut(s) 391, 762
Hpy166II GTNNAC 3 cut(s) 286, 799, 850
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 4 cut(s) 296, 302, 379, 808
Hpy8I GTNNAC 3 cut(s) 286, 799, 850
Hpy99I CGWCG 1 cut(s) 874
HpyAV CCTTC 6 cut(s) 33, 224, 364, 422, 652, 901
HpyCH4III ACNGT 2 cut(s) 685, 962
HpyCH4V TGCA 7 cut(s) 43, 286, 483, 606, 730, 880, 982
HpyF3I CTNAG 5 cut(s) 56, 303, 510, 747, 939
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 2 cut(s) 122, 644
HspAI GCGC 1 cut(s) 240
KasI GGCGCC 1 cut(s) 239
KpnI GGTACC 1 cut(s) 148
Kzo9I GATC 6 cut(s) 115, 159, 298, 387, 449, 637
LmnI GCTCC 1 cut(s) 361
Lsp1109I GCAGC 1 cut(s) 618
MaeI CTAG 5 cut(s) 153, 272, 743, 956, 1003
MalI GATC 6 cut(s) 117, 161, 300, 389, 451, 639
MboI GATC 6 cut(s) 115, 159, 298, 387, 449, 637
MboII GAAGA 5 cut(s) 596, 682, 788, 791, 983
MflI RGATCY 3 cut(s) 159, 387, 449
MhlI GDGCHC 4 cut(s) 57, 288, 354, 764
MluCI AATT 7 cut(s) 258, 548, 698, 829, 838, 925, 998
Mly113I GGCGCC 1 cut(s) 240
MlyI GAGTC 1 cut(s) 467
MroXI GAANNNNTTC 1 cut(s) 574
MspA1I CMGCKG 2 cut(s) 609, 938
MspI CCGG 2 cut(s) 458, 723
MspR9I CCNGG 4 cut(s) 134, 164, 421, 723
MvaI CCWGG 3 cut(s) 134, 164, 421
NarI GGCGCC 1 cut(s) 240
NciI CCSGG 1 cut(s) 723
NdeII GATC 6 cut(s) 115, 159, 298, 387, 449, 637
NheI GCTAGC 1 cut(s) 742
NlaIII CATG 2 cut(s) 122, 644
NlaIV GGNNCC 5 cut(s) 146, 241, 571, 628, 761
NspV TTCGAA 1 cut(s) 594
PasI CCCWGGG 1 cut(s) 420
PceI AGGCCT 1 cut(s) 676
PdmI GAANNNNTTC 1 cut(s) 574
PfeI GAWTC 1 cut(s) 461
PkrI GCNGC 1 cut(s) 608
PleI GAGTC 1 cut(s) 467
PluTI GGCGCC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 467
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 3 cut(s) 132, 162, 419
PspGI CCWGG 3 cut(s) 132, 162, 419
PspN4I GGNNCC 5 cut(s) 146, 241, 571, 628, 761
PspPI GGNCC 2 cut(s) 555, 626
PstI CTGCAG 1 cut(s) 608
PsuI RGATCY 3 cut(s) 159, 387, 449
PvuII CAGCTG 1 cut(s) 938
RsaI GTAC 2 cut(s) 131, 146
RsaNI GTAC 2 cut(s) 130, 145
SacI GAGCTC 1 cut(s) 57
SatI GCNGC 1 cut(s) 607
Sau3AI GATC 6 cut(s) 115, 159, 298, 387, 449, 637
Sau96I GGNCC 2 cut(s) 555, 626
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 4 cut(s) 134, 164, 421, 723
SduI GDGCHC 4 cut(s) 57, 288, 354, 764
SfcI CTRYAG 1 cut(s) 604
SfoI GGCGCC 1 cut(s) 241
SfuI TTCGAA 1 cut(s) 594
SinI GGWCC 1 cut(s) 626
SmlI CTYRAG 3 cut(s) 251, 733, 808
SmoI CTYRAG 3 cut(s) 251, 733, 808
Sse9I AATT 7 cut(s) 258, 548, 698, 829, 838, 925, 998
SseBI AGGCCT 1 cut(s) 676
SsiI CCGC 1 cut(s) 609
SspDI GGCGCC 1 cut(s) 239
SspMI CTAG 5 cut(s) 153, 272, 743, 956, 1003
SstI GAGCTC 1 cut(s) 57
StuI AGGCCT 1 cut(s) 676
StyD4I CCNGG 4 cut(s) 132, 162, 419, 721
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 2 cut(s) 685, 962
TaqI TCGA 2 cut(s) 594, 869
TasI AATT 7 cut(s) 258, 548, 698, 829, 838, 925, 998
TfiI GAWTC 1 cut(s) 461
TscAI CASTG 1 cut(s) 973
TseI GCWGC 1 cut(s) 606
TspDTI ATGAA 2 cut(s) 682, 725
TspRI CASTG 1 cut(s) 973
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 626
XapI RAATTY 3 cut(s) 698, 829, 998
XmnI GAANNNNTTC 1 cut(s) 574
XspI CTAG 5 cut(s) 153, 272, 743, 956, 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.