Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001120

Physical Location & Seq

Genomic Coordinates Forward (+)

47520670 .. 47532043

Gene Structure 11374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0300500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGTCTTCAACGAAAAGTCCCACAGTGTTGGAAGCTTGAAACTCGGCGCCTTGCTTCTCTCTCTGAGAAATCAGTGATTTTGAGAAAGTGGAGCTTTGTGCATCAGGGGGCCATCCAATTCAAAGGTCGACATATTGTGGGTAAGTACGCGAGCTGTGGTGGCATAAATTCCAGAGTTACAGAATTTGATTCAACGGCGAGGACAGCAACTGCAGTTAAGACTCCAGAGTTTCAATTTGAGGGGGTTCTGAGATCCTATTCAGGTTCATCACCAAGCCATTACAGTCTCAAAGTAGACTCATTTTCATTCATGACTGAAAATTCAGTGGAAGGTTATGAAGCAGAGGAGTTTGCAGCTGGAGGGCACAAATGGAAATTGGAGATATACCCAAATGGAAACAAGAAAAGAAATGTGGAAGGCCACGTCTCTCTCTACTTGGAAATGGCTGGAGAATATTCACTTCAGGGTGATTGGGAGATATATGTGGATTTTAGGCTCATGCCTCTTGAAGAGTTTACTAATGCCTCCAATGGATATGTAGTTGATGACACCTGCGTGTTTGGTGCTGAGATACAGTTCTATCCCAAGGGAATTGCCCACGGAATGGGGACTCATCTTTCTCTTTACTTGGCATTATTTGATTTTAAACCAACTCCTCCTGTGTTCAAGATATTTGCAGAGTTTTGCCTGCGCATTGTAGATCAAAAGCATGCCAATCATAAGACATGGTCAGGTAAACACTGTTTCAGTGCCACGTCTTCCTCTTGGGGTTTGCCTAAATTCATTAGTTTAAGCACTTTCAGTGAAGCGGACAAGGGGATGTTGATCAAGAATACTTGCATTCTGGAGGCTGAGGTCACTGTCCATGGAATTGCTAGAGTACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

296

Amino Acids

33.27

Weight (kDa)

8.13

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	94 - 168	5.3e-16	MATH domain
MATH_2	PF22486	192 - 287	4.7e-17	MATH domain
MATH	PF00917	204 - 289	2e-07	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28170 AT2G03760 AT2G27570 AT3G45070 AT3G45070 AT3G45070 AT3G45080 AT5G43690
fragaria_vesca	FvH4_4g29330 FvH4_4g29331 FvH4_4g29332 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29751
malus_domestica	MD16G1055600.v1.1 MD16G1055700.v1.1 MD16G1055800.v1.1 MD16G1056100.v1.1
prunus_persica	Prupe.1G293200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437381 RchiOBHm_Chr4g0437391 RchiOBHm_Chr7g0233341
rosa_laevigata	RLG00000006442 RLG00000013880
rosa_multiflora	Rmu_sc0004759.1_g000009 Rmu_sc0004759.1_g000010 Rmu_sc0010228.1_g000003 Rmu_sc0010228.1_g000005
rosa_roxburghii	Rroxscaffold_3G00227360 Rroxscaffold_5G00378530 Rroxscaffold_5G00378560 Rroxscaffold_5G00378630
rosa_rugosa	Rorug04G0300400 Rorug04G0300500 Rorug04G0300600 Rorug04G0301000
rosa_samantha	Rh4AG355300 Rh4BG365000 Rh4BG365100 Rh4BG365400 Rh4BG365500 Rh4CG379200 Rh4CG379300 Rh4CG379600 Rh4CG379700 Rh4DG359000 Rh4DG359100 Rh4DG359300 Rh5DG503800 Rh7CG455200
rosa_wichuraiana	Rw0G022450 Rw4G031140 Rw4G031170 Rw4G031180 Rw7G035860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	563
Acc16I	TGCGCA	1 cut(s)	695
Acc36I	ACCTGC	1 cut(s)	563
AccB1I	GGYRCC	1 cut(s)	48
AccB7I	CCANNNNNTGG	1 cut(s)	607
AccI	GTMKAC	2 cut(s)	130, 297
AccII	CGCG	1 cut(s)	152
AciI	CCGC	1 cut(s)	812
AclWI	GGATC	1 cut(s)	249
AcsI	RAATTY	4 cut(s)	169, 185, 322, 782
AcuI	CTGAAG	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	2 cut(s)	149, 885
AfiI	CCNNNNNNNGG	1 cut(s)	607
AgsI	TTSAA	7 cut(s)	11, 41, 124, 195, 236, 512, 670
AjiI	CACGTC	2 cut(s)	427, 759
AleI	CACNNNNGTG	1 cut(s)	557
AluBI	AGCT	4 cut(s)	37, 96, 156, 359
AluI	AGCT	4 cut(s)	37, 96, 156, 359
Alw26I	GTCTC	2 cut(s)	293, 433
AlwI	GGATC	1 cut(s)	249
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	2 cut(s)	111, 421
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	4 cut(s)	169, 185, 322, 782
AspLEI	GCGC	2 cut(s)	51, 696
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	264, 482
BaeGI	GKGCMC	1 cut(s)	369
BanI	GGYRCC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	753
BbvCI	CCTCAGC	1 cut(s)	855
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	213
BclI	TGATCA	1 cut(s)	828
BcoDI	GTCTC	2 cut(s)	293, 433
BfaI	CTAG	1 cut(s)	879
BfmI	CTRYAG	2 cut(s)	213, 887
BfoI	RGCGCY	1 cut(s)	52
BfuAI	ACCTGC	1 cut(s)	563
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
BmcAI	AGTACT	1 cut(s)	885
BmgBI	CACGTC	2 cut(s)	427, 759
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	2 cut(s)	50, 112
BmsI	GCATC	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	753
BpmI	CTGGAG	4 cut(s)	210, 381, 471, 869
Bpu10I	CCTNAGC	1 cut(s)	855
BsaBI	GATNNNNATC	1 cut(s)	827
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	3 cut(s)	588, 601, 868
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse8I	GATNNNNATC	1 cut(s)	827
BseDI	CCNNGG	3 cut(s)	588, 601, 868
BseGI	GGATG	2 cut(s)	114, 828
BseJI	GATNNNNATC	1 cut(s)	827
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMII	CTCAG	4 cut(s)	57, 242, 561, 846
BseRI	GAGGAG	2 cut(s)	362, 648
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	2 cut(s)	113, 423
BshNI	GGYRCC	1 cut(s)	48
BslFI	GGGAC	2 cut(s)	5, 625
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	2 cut(s)	293, 433
BsmBI	CGTCTC	1 cut(s)	433
BsmFI	GGGAC	2 cut(s)	5, 625
BsmI	GAATGC	1 cut(s)	843
BsnI	GGCC	2 cut(s)	113, 423
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	3 cut(s)	254, 703, 828
Bsp19I	CCATGG	1 cut(s)	868
BspACI	CCGC	1 cut(s)	812
BspANI	GGCC	2 cut(s)	113, 423
BspCNI	CTCAG	4 cut(s)	58, 243, 562, 847
BspFNI	CGCG	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	50, 112
BspMAI	CTGCAG	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	563
BspPI	GGATC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	48
BssECI	CCNNGG	3 cut(s)	588, 601, 868
BssMI	GATC	3 cut(s)	254, 703, 828
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	2 cut(s)	588, 868
Bst4CI	ACNGT	5 cut(s)	27, 287, 579, 746, 865
Bst6I	CTCTTC	1 cut(s)	507
BstACI	GRCGYC	1 cut(s)	49
BstC8I	GCNNGC	3 cut(s)	154, 692, 714
BstDEI	CTNAG	4 cut(s)	66, 251, 570, 855
BstDSI	CCRYGG	2 cut(s)	601, 868
BstF5I	GGATG	2 cut(s)	114, 828
BstFNI	CGCG	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	2 cut(s)	51, 696
BstKTI	GATC	3 cut(s)	257, 706, 831
BstMAI	GTCTC	2 cut(s)	293, 433
BstMBI	GATC	3 cut(s)	254, 703, 828
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 206
BstNSI	RCATGY	1 cut(s)	716
BstSFI	CTRYAG	2 cut(s)	213, 887
BstSLI	GKGCMC	1 cut(s)	369
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	368
BstV2I	GAAGAC	1 cut(s)	753
BstX2I	RGATCY	1 cut(s)	254
BstXI	CCANNNNNNTGG	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	254
BsuRI	GGCC	2 cut(s)	113, 423
BtgI	CCRYGG	2 cut(s)	601, 868
BtrI	CACGTC	2 cut(s)	427, 759
BtsCI	GGATG	2 cut(s)	114, 828
BtsIMutI	CAGTG	7 cut(s)	32, 81, 333, 742, 757, 811, 861
BveI	ACCTGC	1 cut(s)	563
Cac8I	GCNNGC	3 cut(s)	154, 692, 714
CaiI	CAGNNNCTG	1 cut(s)	212
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	2 cut(s)	51, 696
Cfr13I	GGNCC	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	148, 884
CviAII	CATG	5 cut(s)	313, 502, 713, 729, 869
CviQI	GTAC	2 cut(s)	148, 884
DdeI	CTNAG	4 cut(s)	66, 251, 570, 855
DinI	GGCGCC	1 cut(s)	50
DpnI	GATC	3 cut(s)	256, 705, 830
DpnII	GATC	3 cut(s)	254, 703, 828
DraI	TTTAAA	1 cut(s)	649
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco130I	CCWWGG	2 cut(s)	588, 868
Eco57I	CTGAAG	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	588, 868
EgeI	GGCGCC	1 cut(s)	50
EheI	GGCGCC	1 cut(s)	50
ErhI	CCWWGG	2 cut(s)	588, 868
Esp3I	CGTCTC	1 cut(s)	433
FaeI	CATG	5 cut(s)	316, 505, 716, 732, 872
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	2 cut(s)	5, 625
FatI	CATG	5 cut(s)	312, 501, 712, 728, 868
FbaI	TGATCA	1 cut(s)	828
FblI	GTMKAC	2 cut(s)	130, 297
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	2 cut(s)	101, 835
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	1 cut(s)	879
FspI	TGCGCA	1 cut(s)	695
GlaI	GCGC	2 cut(s)	50, 695
GluI	GCNGC	1 cut(s)	357
GsuI	CTGGAG	4 cut(s)	210, 381, 471, 869
HaeII	RGCGCY	1 cut(s)	52
HaeIII	GGCC	2 cut(s)	113, 423
HhaI	GCGC	2 cut(s)	51, 696
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	5 cut(s)	316, 505, 716, 732, 872
Hin6I	GCGC	2 cut(s)	49, 694
HinP1I	GCGC	2 cut(s)	49, 694
HincII	GTYRAC	1 cut(s)	131
HindII	GTYRAC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	4 cut(s)	191, 223, 299, 613
HphI	GGTGA	2 cut(s)	264, 482
Hpy166II	GTNNAC	4 cut(s)	131, 298, 519, 740
Hpy188I	TCNGA	2 cut(s)	67, 252
Hpy188III	TCNNGA	7 cut(s)	174, 227, 313, 509, 670, 832, 848
Hpy8I	GTNNAC	4 cut(s)	131, 298, 519, 740
HpyAV	CCTTC	2 cut(s)	326, 413
HpyCH4III	ACNGT	5 cut(s)	27, 287, 579, 746, 865
HpyCH4IV	ACGT	2 cut(s)	426, 758
HpyCH4V	TGCA	5 cut(s)	103, 215, 356, 680, 843
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 206
HpyF3I	CTNAG	4 cut(s)	66, 251, 570, 855
HpySE526I	ACGT	2 cut(s)	426, 758
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	5 cut(s)	316, 505, 716, 732, 872
HspAI	GCGC	2 cut(s)	49, 694
KasI	GGCGCC	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	828
Kzo9I	GATC	3 cut(s)	254, 703, 828
LmnI	GCTCC	1 cut(s)	93
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	2 cut(s)	426, 758
MaeIII	GTNAC	2 cut(s)	178, 859
MalI	GATC	3 cut(s)	256, 705, 830
MboI	GATC	3 cut(s)	254, 703, 828
MboII	GAAGA	2 cut(s)	524, 753
MflI	RGATCY	1 cut(s)	254
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	9 cut(s)	119, 169, 185, 236, 322, 377, 594, 782, 873
Mly113I	GGCGCC	1 cut(s)	49
MlyI	GAGTC	3 cut(s)	217, 293, 607
MmeI	TCCRAC	1 cut(s)	11
MseI	TTAA	3 cut(s)	219, 648, 794
MslI	CAYNNNNRTG	1 cut(s)	557
MspA1I	CMGCKG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	843
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	162, 206
NarI	GGCGCC	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	868
NdeII	GATC	3 cut(s)	254, 703, 828
NlaIII	CATG	5 cut(s)	316, 505, 716, 732, 872
NlaIV	GGNNCC	2 cut(s)	50, 112
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	859
NsbI	TGCGCA	1 cut(s)	695
NspI	RCATGY	1 cut(s)	716
OliI	CACNNNNGTG	1 cut(s)	557
PaeI	GCATGC	1 cut(s)	716
PagI	TCATGA	1 cut(s)	312
PaqCI	CACCTGC	1 cut(s)	563
PctI	GAATGC	1 cut(s)	843
PfeI	GAWTC	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	730
PflMI	CCANNNNNTGG	1 cut(s)	607
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	3 cut(s)	217, 293, 607
PluTI	GGCGCC	1 cut(s)	52
PpsI	GAGTC	3 cut(s)	217, 293, 607
PspN4I	GGNNCC	2 cut(s)	50, 112
PspPI	GGNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	254
PsyI	GACNNNGTC	1 cut(s)	730
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	2 cut(s)	149, 885
RsaNI	GTAC	2 cut(s)	148, 884
RseI	CAYNNNNRTG	1 cut(s)	557
SalI	GTCGAC	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	219, 648, 794
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	3 cut(s)	254, 703, 828
Sau96I	GGNCC	1 cut(s)	111
ScaI	AGTACT	1 cut(s)	885
SchI	GAGTC	3 cut(s)	217, 293, 607
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	2 cut(s)	213, 887
SfoI	GGCGCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	557
SphI	GCATGC	1 cut(s)	716
Sse9I	AATT	9 cut(s)	119, 169, 185, 236, 322, 377, 594, 782, 873
SsiI	CCGC	1 cut(s)	812
SspDI	GGCGCC	1 cut(s)	48
SspI	AATATT	1 cut(s)	458
SspMI	CTAG	1 cut(s)	879
StyI	CCWWGG	2 cut(s)	588, 868
TaaI	ACNGT	5 cut(s)	27, 287, 579, 746, 865
TaiI	ACGT	2 cut(s)	429, 761
TaqI	TCGA	1 cut(s)	130
TasI	AATT	9 cut(s)	119, 169, 185, 236, 322, 377, 594, 782, 873
TatI	WGTACW	1 cut(s)	883
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	3 cut(s)	219, 648, 794
Tru9I	TTAA	3 cut(s)	219, 648, 794
TscAI	CASTG	7 cut(s)	32, 81, 333, 749, 757, 811, 868
TseFI	GTSAC	1 cut(s)	859
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	859
TspDTI	ATGAA	5 cut(s)	258, 297, 301, 354, 775
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	7 cut(s)	32, 81, 333, 749, 757, 811, 868
Tth111I	GACNNNGTC	1 cut(s)	730
Van91I	CCANNNNNTGG	1 cut(s)	607
XapI	RAATTY	4 cut(s)	169, 185, 322, 782
XceI	RCATGY	1 cut(s)	716
XmiI	GTMKAC	2 cut(s)	130, 297
XspI	CTAG	1 cut(s)	879
ZrmI	AGTACT	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.