Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001120

Physical Location & Seq

Genomic Coordinates Forward (+)

60492918 .. 60495643

Gene Structure 2726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40565

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTCACTACCTCAAACTCCTCCTTCTCTTCCCCAATACTTGCAAGAAATTGAGCTCAGCCAAGAAACCAGAGACCTAATATCCACGCTTCCTGCTGAGAAAGGATTGATTTCAGGTCATTTACATCAGTACCAGGGCTTTTGGTACCCCACTATGCATATCCAAAAAGTTTTAGCCTCCCAAAAACACTTTCAAGCTCAAGATACTGATATCCTTCTCGCTACTACTCCCAAATCAGGCACCACTTGGCTCAAGGCAATTCTGTTTGCGCTAGTAAAGCGAGTGCACTATCATCCAGACCCACAAAACATGGACCACCCTTTGCTCACAAACAACCCTCATGTTCTTGTGCCCTTCTTGGAGAATAAGCATTCCGGTAAGAACCAGATTCCTGACCCCACCTCTTATGCTCCTCCCAGGCTCTTTTCAACTCACTTACCACTAGCGCATCTGCCACAATCTGTTAAAGACTCTGCTTGCAAGGTTGTCTATCTGTGTAGAAACCCTAAGGACATAATAGTTTCACTTTGGCACTTCACAAACAGAGTGAGACACAAGAGTATGGGAACCAATTCACTTGAAGAAGTTTTCGAATACTTCCGCAGGGGAGTGAGTGGGTATGGACCCTTTTGGGATCATGTGTTGGGCTACTGGAAGGAAAGCTTGGAAGGGCCTGAAACGGTGTTCTTCCTCAAATATGAGGAAATGAAAGAAAAACCTGGTCTGCAGTTGAGGAGACTAGCTGAGTTCTTGGGGTGCCCATTTTCACCGAAAGAAGAGGCACAGGGAGTGGTGGACAATATCTTAAGGCTGTGTAGTTTTGAGAATTTGAGCAATTTGGATGTGAACAAAAATGAGAAATTATCGACAGGGATGGAGAATAGTGCATTCTTTCGGCGAGGGGAGGCGGGAGACTGGAGGAATTATTTGACAGCTGAGATGGTGGAACAGCTAGACCGTATCATTGAAGAGAAGTTGCAAGTTATCTGCGTCTGTGCGGGAGACTGGAGGAATTGTTTGACAGCTGAGACGGTTGAACAGTTAGACCGTATCACTGAAGAGAAGAGGCAAGGTTCTGGATTAAAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

363

Amino Acids

41.71

Weight (kDa)

6.4

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	68 - 327	6.5e-77	Sulfotransferase domain
Sulfotransfer_3	PF13469	161 - 256	1.2e-06	Sulfotransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28170 AT2G03760 AT2G27570 AT3G45070 AT3G45070 AT3G45070 AT3G45080 AT5G43690
fragaria_vesca	FvH4_4g29330 FvH4_4g29331 FvH4_4g29332 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29751
malus_domestica	MD16G1055600.v1.1 MD16G1055700.v1.1 MD16G1055800.v1.1 MD16G1056100.v1.1
prunus_persica	Prupe.1G293200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437381 RchiOBHm_Chr4g0437391 RchiOBHm_Chr7g0233341
rosa_laevigata	RLG00000006442 RLG00000013880
rosa_multiflora	Rmu_sc0004759.1_g000009 Rmu_sc0004759.1_g000010 Rmu_sc0010228.1_g000003 Rmu_sc0010228.1_g000005
rosa_roxburghii	Rroxscaffold_3G00227360 Rroxscaffold_5G00378530 Rroxscaffold_5G00378560 Rroxscaffold_5G00378630
rosa_rugosa	Rorug04G0300400 Rorug04G0300500 Rorug04G0300600 Rorug04G0301000
rosa_samantha	Rh4AG355300 Rh4BG365000 Rh4BG365100 Rh4BG365400 Rh4BG365500 Rh4CG379200 Rh4CG379300 Rh4CG379600 Rh4CG379700 Rh4DG359000 Rh4DG359100 Rh4DG359300 Rh5DG503800 Rh7CG455200
rosa_wichuraiana	Rw0G022450 Rw4G031140 Rw4G031170 Rw4G031180 Rw7G035860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	144
AccB1I	GGYRCC	3 cut(s)	144, 239, 756
AciI	CCGC	3 cut(s)	601, 908, 998
AclWI	GGATC	1 cut(s)	642
AcsI	RAATTY	2 cut(s)	826, 1085
AcuI	CTGAAG	1 cut(s)	1077
AfaI	GTAC	2 cut(s)	131, 146
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflII	CTTAAG	1 cut(s)	805
AgsI	TTSAA	5 cut(s)	194, 429, 581, 968, 1037
AjnI	CCWGG	3 cut(s)	132, 416, 718
AjuI	GAANNNNNNNTTGG	4 cut(s)	174, 206, 647, 679
AluBI	AGCT	7 cut(s)	55, 197, 663, 743, 935, 952, 1025
AluI	AGCT	7 cut(s)	55, 197, 663, 743, 935, 952, 1025
Alw21I	GWGCWC	2 cut(s)	57, 288
Alw26I	GTCTC	6 cut(s)	66, 544, 730, 906, 996, 1022
Alw44I	GTGCAC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	642
AoxI	GGCC	1 cut(s)	671
ApaLI	GTGCAC	1 cut(s)	284
ApoI	RAATTY	2 cut(s)	826, 1085
Asp700I	GAANNNNTTC	1 cut(s)	571
Asp718I	GGTACC	1 cut(s)	144
AspLEI	GCGC	2 cut(s)	271, 448
AspS9I	GGNCC	3 cut(s)	313, 623, 671
AsuHPI	GGTGA	1 cut(s)	759
AsuII	TTCGAA	1 cut(s)	591
AvaII	GGWCC	2 cut(s)	313, 623
AxyI	CCTNAGG	1 cut(s)	507
BaeGI	GKGCMC	3 cut(s)	288, 354, 761
BaeI	ACNNNNGTAYC	2 cut(s)	113, 146
BanI	GGYRCC	3 cut(s)	144, 239, 756
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	2 cut(s)	57, 288
BccI	CCATC	2 cut(s)	868, 934
BciT130I	CCWGG	3 cut(s)	134, 418, 720
BcoDI	GTCTC	6 cut(s)	66, 544, 730, 906, 996, 1022
BfaI	CTAG	4 cut(s)	272, 443, 740, 953
BfmI	CTRYAG	1 cut(s)	725
BfrI	CTTAAG	1 cut(s)	805
BlpI	GCTNAGC	1 cut(s)	56
Bme1390I	CCNGG	3 cut(s)	134, 418, 720
Bme18I	GGWCC	2 cut(s)	313, 623
BmgT120I	GGNCC	3 cut(s)	313, 623, 671
BmiI	GGNNCC	5 cut(s)	146, 241, 568, 625, 758
BmrFI	CCNGG	3 cut(s)	134, 418, 720
BmsI	GCATC	1 cut(s)	457
BpmI	CTGGAG	2 cut(s)	937, 1027
Bpu1102I	GCTNAGC	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	591
BpuEI	CTTGAG	2 cut(s)	183, 236
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	133, 416
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	2 cut(s)	1000, 1030
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	3 cut(s)	656, 920, 1010
Bse21I	CCTNAGG	1 cut(s)	507
BseBI	CCWGG	3 cut(s)	134, 418, 720
BseDI	CCNNGG	2 cut(s)	133, 416
BseGI	GGATG	3 cut(s)	292, 847, 879
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	5 cut(s)	70, 87, 735, 927, 1017
BseNI	ACTGG	3 cut(s)	656, 920, 1010
BseRI	GAGGAG	3 cut(s)	9, 402, 748
BseSI	GKGCMC	3 cut(s)	288, 354, 761
BshFI	GGCC	1 cut(s)	673
BshNI	GGYRCC	3 cut(s)	144, 239, 756
BsiHKAI	GWGCWC	2 cut(s)	57, 288
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	6 cut(s)	66, 544, 730, 906, 996, 1022
BsmBI	CGTCTC	1 cut(s)	1022
BsmI	GAATGC	2 cut(s)	370, 887
BsnI	GGCC	1 cut(s)	673
Bso31I	GGTCTC	1 cut(s)	66
Bsp119I	TTCGAA	1 cut(s)	591
Bsp1286I	GDGCHC	4 cut(s)	57, 288, 354, 761
Bsp143I	GATC	1 cut(s)	634
Bsp1720I	GCTNAGC	1 cut(s)	56
BspACI	CCGC	3 cut(s)	601, 908, 998
BspANI	GGCC	1 cut(s)	673
BspCNI	CTCAG	5 cut(s)	69, 88, 736, 928, 1018
BspLI	GGNNCC	5 cut(s)	146, 241, 568, 625, 758
BspMAI	CTGCAG	1 cut(s)	729
BspPI	GGATC	1 cut(s)	642
BspT104I	TTCGAA	1 cut(s)	591
BspT107I	GGYRCC	3 cut(s)	144, 239, 756
BspTI	CTTAAG	1 cut(s)	805
BspTNI	GGTCTC	1 cut(s)	66
BsrI	ACTGG	3 cut(s)	656, 920, 1010
BssECI	CCNNGG	2 cut(s)	133, 416
BssMI	GATC	1 cut(s)	634
Bst2UI	CCWGG	3 cut(s)	134, 418, 720
Bst4CI	ACNGT	5 cut(s)	682, 959, 1033, 1041, 1049
Bst6I	CTCTTC	5 cut(s)	33, 771, 963, 1053, 1058
BstAFI	CTTAAG	1 cut(s)	805
BstBI	TTCGAA	1 cut(s)	591
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	6 cut(s)	56, 96, 507, 744, 936, 1026
BstF5I	GGATG	3 cut(s)	292, 847, 879
BstHHI	GCGC	2 cut(s)	271, 448
BstKTI	GATC	1 cut(s)	637
BstMAI	GTCTC	6 cut(s)	66, 544, 730, 906, 996, 1022
BstMBI	GATC	1 cut(s)	634
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	3 cut(s)	134, 418, 720
BstSCI	CCNGG	3 cut(s)	132, 416, 718
BstSFI	CTRYAG	1 cut(s)	725
BstSLI	GKGCMC	3 cut(s)	288, 354, 761
Bsu36I	CCTNAGG	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	673
BtsCI	GGATG	3 cut(s)	292, 847, 879
BtsIMutI	CAGTG	1 cut(s)	1053
Cac8I	GCNNGC	1 cut(s)	478
CfoI	GCGC	2 cut(s)	271, 448
Cfr13I	GGNCC	3 cut(s)	313, 623, 671
CseI	GACGC	1 cut(s)	979
CsiI	ACCWGGT	1 cut(s)	718
Csp6I	GTAC	2 cut(s)	130, 145
CviAII	CATG	3 cut(s)	310, 341, 638
CviQI	GTAC	2 cut(s)	130, 145
DdeI	CTNAG	6 cut(s)	56, 96, 507, 744, 936, 1026
DpnI	GATC	1 cut(s)	636
DpnII	GATC	1 cut(s)	634
Eam1104I	CTCTTC	5 cut(s)	33, 771, 963, 1053, 1058
EarI	CTCTTC	5 cut(s)	33, 771, 963, 1053, 1058
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	211
Eco47I	GGWCC	2 cut(s)	313, 623
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	1077
Eco81I	CCTNAGG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	671
EcoRII	CCWGG	3 cut(s)	132, 416, 718
EcoRV	GATATC	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	57
Esp3I	CGTCTC	1 cut(s)	1022
FaeI	CATG	3 cut(s)	313, 344, 641
FalI	AAGNNNNNCTT	2 cut(s)	647, 679
FatI	CATG	3 cut(s)	309, 340, 637
FauI	CCCGC	2 cut(s)	901, 991
FokI	GGATG	3 cut(s)	279, 854, 886
FriOI	GRGCYC	1 cut(s)	57
FspBI	CTAG	4 cut(s)	272, 443, 740, 953
GlaI	GCGC	2 cut(s)	270, 447
GsuI	CTGGAG	2 cut(s)	937, 1027
HaeIII	GGCC	1 cut(s)	673
HapII	CCGG	1 cut(s)	375
HgaI	GACGC	1 cut(s)	979
HhaI	GCGC	2 cut(s)	271, 448
Hin1II	CATG	3 cut(s)	313, 344, 641
Hin6I	GCGC	2 cut(s)	269, 446
HinP1I	GCGC	2 cut(s)	269, 446
HindIII	AAGCTT	1 cut(s)	661
HinfI	GANTC	2 cut(s)	388, 470
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	1 cut(s)	759
Hpy166II	GTNNAC	3 cut(s)	286, 796, 847
Hpy188III	TCNNGA	4 cut(s)	200, 296, 392, 1077
Hpy8I	GTNNAC	3 cut(s)	286, 796, 847
HpyAV	CCTTC	5 cut(s)	33, 224, 364, 649, 662
HpyCH4III	ACNGT	5 cut(s)	682, 959, 1033, 1041, 1049
HpyCH4V	TGCA	7 cut(s)	43, 157, 286, 480, 727, 887, 979
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	6 cut(s)	56, 96, 507, 744, 936, 1026
Hsp92II	CATG	3 cut(s)	313, 344, 641
HspAI	GCGC	2 cut(s)	269, 446
KpnI	GGTACC	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	634
LmnI	GCTCC	1 cut(s)	415
LweI	GCATC	1 cut(s)	457
MabI	ACCWGGT	1 cut(s)	718
MaeI	CTAG	4 cut(s)	272, 443, 740, 953
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	636
MboI	GATC	1 cut(s)	634
MboII	GAAGA	7 cut(s)	20, 593, 679, 788, 980, 1070, 1075
MhlI	GDGCHC	4 cut(s)	57, 288, 354, 761
MluCI	AATT	9 cut(s)	48, 258, 571, 826, 835, 860, 922, 1012, 1085
MlyI	GAGTC	1 cut(s)	464
Mph1103I	ATGCAT	1 cut(s)	159
MroXI	GAANNNNTTC	1 cut(s)	571
MseI	TTAA	3 cut(s)	465, 806, 1082
MspA1I	CMGCKG	2 cut(s)	935, 1025
MspCI	CTTAAG	1 cut(s)	805
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	3 cut(s)	134, 418, 720
Mva1269I	GAATGC	2 cut(s)	370, 887
MvaI	CCWGG	3 cut(s)	134, 418, 720
MwoI	GCNNNNNNNGC	1 cut(s)	277
NdeII	GATC	1 cut(s)	634
NlaIII	CATG	3 cut(s)	313, 344, 641
NlaIV	GGNNCC	5 cut(s)	146, 241, 568, 625, 758
NmuCI	GTSAC	1 cut(s)	3
NsiI	ATGCAT	1 cut(s)	159
NspV	TTCGAA	1 cut(s)	591
PctI	GAATGC	2 cut(s)	370, 887
PdmI	GAANNNNTTC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	388
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	3 cut(s)	132, 416, 718
PspGI	CCWGG	3 cut(s)	132, 416, 718
PspN4I	GGNNCC	5 cut(s)	146, 241, 568, 625, 758
PspPI	GGNCC	3 cut(s)	313, 623, 671
PstI	CTGCAG	1 cut(s)	729
PvuII	CAGCTG	2 cut(s)	935, 1025
RsaI	GTAC	2 cut(s)	131, 146
RsaNI	GTAC	2 cut(s)	130, 145
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	3 cut(s)	465, 806, 1082
Sau3AI	GATC	1 cut(s)	634
Sau96I	GGNCC	3 cut(s)	313, 623, 671
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	3 cut(s)	134, 418, 720
SduI	GDGCHC	4 cut(s)	57, 288, 354, 761
SexAI	ACCWGGT	1 cut(s)	718
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	1 cut(s)	725
SfuI	TTCGAA	1 cut(s)	591
SinI	GGWCC	2 cut(s)	313, 623
SmlI	CTYRAG	3 cut(s)	198, 251, 805
SmoI	CTYRAG	3 cut(s)	198, 251, 805
Sse9I	AATT	9 cut(s)	48, 258, 571, 826, 835, 860, 922, 1012, 1085
SsiI	CCGC	3 cut(s)	601, 908, 998
SspMI	CTAG	4 cut(s)	272, 443, 740, 953
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	3 cut(s)	132, 416, 718
TaaI	ACNGT	5 cut(s)	682, 959, 1033, 1041, 1049
TaqI	TCGA	2 cut(s)	591, 866
TasI	AATT	9 cut(s)	48, 258, 571, 826, 835, 860, 922, 1012, 1085
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	3 cut(s)	465, 806, 1082
Tru9I	TTAA	3 cut(s)	465, 806, 1082
TscAI	CASTG	1 cut(s)	1060
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	722
TspRI	CASTG	1 cut(s)	1060
Vha464I	CTTAAG	1 cut(s)	805
VneI	GTGCAC	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	313, 623
XapI	RAATTY	2 cut(s)	826, 1085
XmnI	GAANNNNTTC	1 cut(s)	571
XspI	CTAG	4 cut(s)	272, 443, 740, 953
Zsp2I	ATGCAT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.