Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001120

Physical Location & Seq

Genomic Coordinates Forward (+)

29505602 .. 29506750

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g29330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTCACTAACTCAGCCTCCTCCAGCTCTTCCCCAATACTTGCAAGAAAATGAGATCAGCCAAGAAACCAGAGACATGATATCTACTCTACCTAGAGATCAAGGTTGGATTGCAAGTCATATCTATCAGTACCAAGGCTTTTGGCACTCAACTAGGCAGATAGAAGGAGTCTTGGCGTGCCAAGAAAACTTCCGAGCTCAAGATTCTGATATCCTACTTGTTACTACTCCCAAATCAGGTACCACTTGGCTCAAGGCAATCTTGTTTTCCCTTGTGAAACGAGGAGAGTATTATCATCCAGAACCTCAAGACCACCCCTTGCTCACAAAAAACCCCCATGTTCTTGTTCCCCATTTGGAGATTGGTTTGTACCTTCAGAAACCGGTACCTGACCTCATGACCTCCTATGCCCCTCCTCGGCTCTTTTCAAGTCACTTACCACTTGTGTCTCTACCGGAATCAGTCAAAGAGACTGCTTGCAAGGTTGTCTATCTGTGTAGGAACCCTAAGGACACATTTGTTTCACTCTGGCACTTCGCAAACAAATTGAGACCCGAGAGTTGGGGAAGCATTTCACTTGAAGAAGCTTTGGAATTGTTCTGCAGGGGAGTGAGTATGTGTGGACCCTTTTGGGATCATGTTTTGGGGTACTGGAATGAGAGCTTGAAAAGGCCTCAAAGTGTATTTTTCATCAAATATGAGGAAATGAAAGAAGAAGAAGAAGCCGGTTCTCACTTGAGGAAGCTAGCTGAGTTCTTGGGGTGCCCATTTTCTCCAGAAGAAGAGGCACAAGGGGTGGTGGGCAACATCCTGAAGCAGTGTAGTTTTGAGACTTTGAGCAATTTGGATGTGAACAAAAGAGGGAAGTTATCATCCGGCGAGGAGCATAGTGCTTTCTTTCGGCGAGGGGAGGCTGGAGATTGGAGGAATCATTTGACTGCTGAGATGGCGGAACAGATAGACCGTATCACTGAAGAGAAGTGGCAAGGTTCTGGATTGAAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

336

Amino Acids

38.41

Weight (kDa)

5.68

Isoelectric Point (pI)

60.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	68 - 332	3e-73	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28170 AT2G03760 AT2G27570 AT3G45070 AT3G45070 AT3G45070 AT3G45080 AT5G43690
fragaria_vesca	FvH4_4g29330 FvH4_4g29331 FvH4_4g29332 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29751
malus_domestica	MD16G1055600.v1.1 MD16G1055700.v1.1 MD16G1055800.v1.1 MD16G1056100.v1.1
prunus_persica	Prupe.1G293200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437381 RchiOBHm_Chr4g0437391 RchiOBHm_Chr7g0233341
rosa_laevigata	RLG00000006442 RLG00000013880
rosa_multiflora	Rmu_sc0004759.1_g000009 Rmu_sc0004759.1_g000010 Rmu_sc0010228.1_g000003 Rmu_sc0010228.1_g000005
rosa_roxburghii	Rroxscaffold_3G00227360 Rroxscaffold_5G00378530 Rroxscaffold_5G00378560 Rroxscaffold_5G00378630
rosa_rugosa	Rorug04G0300400 Rorug04G0300500 Rorug04G0300600 Rorug04G0301000
rosa_samantha	Rh4AG355300 Rh4BG365000 Rh4BG365100 Rh4BG365400 Rh4BG365500 Rh4CG379200 Rh4CG379300 Rh4CG379600 Rh4CG379700 Rh4DG359000 Rh4DG359100 Rh4DG359300 Rh5DG503800 Rh7CG455200
rosa_wichuraiana	Rw0G022450 Rw4G031140 Rw4G031170 Rw4G031180 Rw7G035860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	239, 385
AccB1I	GGYRCC	3 cut(s)	239, 385, 762
AciI	CCGC	1 cut(s)	950
AclWI	GGATC	1 cut(s)	642
AcsI	RAATTY	1 cut(s)	1001
AcuI	CTGAAG	3 cut(s)	359, 833, 993
AfaI	GTAC	5 cut(s)	131, 241, 371, 387, 650
AfiI	CCNNNNNNNGG	3 cut(s)	236, 417, 561
AgeI	ACCGGT	1 cut(s)	382
AgsI	TTSAA	4 cut(s)	429, 581, 667, 1000
AluBI	AGCT	6 cut(s)	26, 197, 587, 663, 745, 749
AluI	AGCT	6 cut(s)	26, 197, 587, 663, 745, 749
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	5 cut(s)	66, 453, 464, 544, 824
AlwI	GGATC	1 cut(s)	642
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	1 cut(s)	671
ApoI	RAATTY	1 cut(s)	1001
AsiGI	ACCGGT	1 cut(s)	382
Asp700I	GAANNNNTTC	1 cut(s)	571
Asp718I	GGTACC	2 cut(s)	239, 385
AspS9I	GGNCC	1 cut(s)	623
AsuNHI	GCTAGC	1 cut(s)	745
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	623
AxyI	CCTNAGG	1 cut(s)	507
BaeGI	GKGCMC	1 cut(s)	767
BanI	GGYRCC	3 cut(s)	239, 385, 762
BanII	GRGCYC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	199
BccI	CCATC	1 cut(s)	940
BcoDI	GTCTC	5 cut(s)	66, 453, 464, 544, 824
BfaI	CTAG	3 cut(s)	93, 153, 746
BfmI	CTRYAG	1 cut(s)	601
Bme18I	GGWCC	1 cut(s)	623
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	623
BmiI	GGNNCC	5 cut(s)	241, 387, 503, 625, 764
BmtI	GCTAGC	1 cut(s)	749
BpmI	CTGGAG	3 cut(s)	6, 759, 936
BpuEI	CTTGAG	4 cut(s)	183, 236, 291, 757
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	133, 416
BsaWI	WCCGGW	2 cut(s)	382, 454
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 417, 561
Bse118I	RCCGGY	2 cut(s)	382, 725
Bse1I	ACTGG	1 cut(s)	656
Bse21I	CCTNAGG	1 cut(s)	507
BseDI	CCNNGG	2 cut(s)	133, 416
BseGI	GGATG	4 cut(s)	295, 807, 853, 872
BseLI	CCNNNNNNNGG	3 cut(s)	236, 417, 561
BseMII	CTCAG	3 cut(s)	26, 741, 933
BseNI	ACTGG	1 cut(s)	656
BseRI	GAGGAG	4 cut(s)	9, 297, 405, 896
BseSI	GKGCMC	1 cut(s)	767
BshFI	GGCC	1 cut(s)	673
BshNI	GGYRCC	3 cut(s)	239, 385, 762
BshTI	ACCGGT	1 cut(s)	382
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	4 cut(s)	383, 455, 726, 876
BslI	CCNNNNNNNGG	3 cut(s)	236, 417, 561
BsmAI	GTCTC	5 cut(s)	66, 453, 464, 544, 824
BsnI	GGCC	1 cut(s)	673
Bso31I	GGTCTC	1 cut(s)	544
BsoBI	CYCGRG	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	199, 767
Bsp143I	GATC	3 cut(s)	54, 97, 634
BspACI	CCGC	1 cut(s)	950
BspANI	GGCC	1 cut(s)	673
BspCNI	CTCAG	3 cut(s)	25, 742, 934
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	5 cut(s)	241, 387, 503, 625, 764
BspMAI	CTGCAG	1 cut(s)	605
BspOI	GCTAGC	1 cut(s)	749
BspPI	GGATC	1 cut(s)	642
BspQI	GCTCTTC	1 cut(s)	33
BspT107I	GGYRCC	3 cut(s)	239, 385, 762
BspTNI	GGTCTC	1 cut(s)	544
BsrFI	RCCGGY	2 cut(s)	382, 725
BsrI	ACTGG	1 cut(s)	656
BssAI	RCCGGY	2 cut(s)	382, 725
BssECI	CCNNGG	2 cut(s)	133, 416
BssMI	GATC	3 cut(s)	54, 97, 634
BssT1I	CCWWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	965
Bst6I	CTCTTC	3 cut(s)	33, 777, 969
BstC8I	GCNNGC	3 cut(s)	178, 478, 747
BstDEI	CTNAG	4 cut(s)	12, 507, 750, 942
BstF5I	GGATG	4 cut(s)	295, 807, 853, 872
BstKTI	GATC	3 cut(s)	57, 100, 637
BstMAI	GTCTC	5 cut(s)	66, 453, 464, 544, 824
BstMBI	GATC	3 cut(s)	54, 97, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	947
BstSFI	CTRYAG	1 cut(s)	601
BstSLI	GKGCMC	1 cut(s)	767
Bsu36I	CCTNAGG	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	673
BtsCI	GGATG	4 cut(s)	295, 807, 853, 872
BtsI	GCAGTG	1 cut(s)	824
BtsIMutI	CAGTG	2 cut(s)	824, 969
Cac8I	GCNNGC	3 cut(s)	178, 478, 747
CciI	TCATGA	1 cut(s)	396
Cfr10I	RCCGGY	2 cut(s)	382, 725
Cfr13I	GGNCC	1 cut(s)	623
Csp6I	GTAC	5 cut(s)	130, 240, 370, 386, 649
CspAI	ACCGGT	1 cut(s)	382
CviAII	CATG	4 cut(s)	76, 338, 397, 638
CviQI	GTAC	5 cut(s)	130, 240, 370, 386, 649
DdeI	CTNAG	4 cut(s)	12, 507, 750, 942
DpnI	GATC	3 cut(s)	56, 99, 636
DpnII	GATC	3 cut(s)	54, 97, 634
Eam1104I	CTCTTC	3 cut(s)	33, 777, 969
EarI	CTCTTC	3 cut(s)	33, 777, 969
EciI	GGCGGA	1 cut(s)	965
Ecl136II	GAGCTC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	133
Eco147I	AGGCCT	1 cut(s)	673
Eco24I	GRGCYC	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	544
Eco32I	GATATC	2 cut(s)	81, 211
Eco47I	GGWCC	1 cut(s)	623
Eco53kI	GAGCTC	1 cut(s)	197
Eco57I	CTGAAG	3 cut(s)	359, 833, 993
Eco81I	CCTNAGG	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	554
EcoICRI	GAGCTC	1 cut(s)	197
EcoRV	GATATC	2 cut(s)	81, 211
EcoT14I	CCWWGG	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	4 cut(s)	79, 341, 400, 641
FaiI	YATR	9 cut(s)	77, 120, 339, 398, 408, 617, 639, 699, 888
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FatI	CATG	4 cut(s)	75, 337, 396, 637
FokI	GGATG	4 cut(s)	282, 794, 859, 860
FriOI	GRGCYC	1 cut(s)	199
FspBI	CTAG	3 cut(s)	93, 153, 746
GsuI	CTGGAG	3 cut(s)	6, 759, 936
HaeIII	GGCC	1 cut(s)	673
HapII	CCGG	4 cut(s)	383, 455, 726, 876
Hin1II	CATG	4 cut(s)	79, 341, 400, 641
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	4 cut(s)	168, 203, 458, 928
HpaII	CCGG	4 cut(s)	383, 455, 726, 876
Hpy166II	GTNNAC	2 cut(s)	623, 853
Hpy188I	TCNGA	3 cut(s)	194, 208, 378
Hpy188III	TCNNGA	7 cut(s)	200, 299, 308, 397, 776, 811, 993
Hpy8I	GTNNAC	2 cut(s)	623, 853
HpyAV	CCTTC	2 cut(s)	158, 383
HpyCH4III	ACNGT	1 cut(s)	965
HpyCH4V	TGCA	4 cut(s)	43, 113, 480, 603
HpyF10VI	GCNNNNNNNGC	1 cut(s)	947
HpyF3I	CTNAG	4 cut(s)	12, 507, 750, 942
Hsp92II	CATG	4 cut(s)	79, 341, 400, 641
KpnI	GGTACC	2 cut(s)	243, 389
Kzo9I	GATC	3 cut(s)	54, 97, 634
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	883
MaeI	CTAG	3 cut(s)	93, 153, 746
MaeIII	GTNAC	3 cut(s)	3, 220, 431
MalI	GATC	3 cut(s)	56, 99, 636
MboI	GATC	3 cut(s)	54, 97, 634
MboII	GAAGA	8 cut(s)	20, 593, 725, 728, 731, 791, 794, 986
MhlI	GDGCHC	2 cut(s)	199, 767
MluCI	AATT	4 cut(s)	545, 593, 841, 1001
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	571
MspI	CCGG	4 cut(s)	383, 455, 726, 876
MwoI	GCNNNNNNNGC	1 cut(s)	947
NdeII	GATC	3 cut(s)	54, 97, 634
NheI	GCTAGC	1 cut(s)	745
NlaIII	CATG	4 cut(s)	79, 341, 400, 641
NlaIV	GGNNCC	5 cut(s)	241, 387, 503, 625, 764
NmeAIII	GCCGAG	1 cut(s)	397
NmuCI	GTSAC	2 cut(s)	3, 431
PagI	TCATGA	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	673
PciSI	GCTCTTC	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	571
PfeI	GAWTC	3 cut(s)	203, 458, 928
PinAI	ACCGGT	1 cut(s)	382
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	199
PspN4I	GGNNCC	5 cut(s)	241, 387, 503, 625, 764
PspPI	GGNCC	1 cut(s)	623
PstI	CTGCAG	1 cut(s)	605
RsaI	GTAC	5 cut(s)	131, 241, 371, 387, 650
RsaNI	GTAC	5 cut(s)	130, 240, 370, 386, 649
SacI	GAGCTC	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	33
Sau3AI	GATC	3 cut(s)	54, 97, 634
Sau96I	GGNCC	1 cut(s)	623
SchI	GAGTC	1 cut(s)	177
SduI	GDGCHC	2 cut(s)	199, 767
SfcI	CTRYAG	1 cut(s)	601
SinI	GGWCC	1 cut(s)	623
SmlI	CTYRAG	4 cut(s)	198, 251, 306, 736
SmoI	CTYRAG	4 cut(s)	198, 251, 306, 736
Sse9I	AATT	4 cut(s)	545, 593, 841, 1001
SseBI	AGGCCT	1 cut(s)	673
SsiI	CCGC	1 cut(s)	950
SspMI	CTAG	3 cut(s)	93, 153, 746
SstI	GAGCTC	1 cut(s)	199
StuI	AGGCCT	1 cut(s)	673
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	965
TasI	AATT	4 cut(s)	545, 593, 841, 1001
TfiI	GAWTC	3 cut(s)	203, 458, 928
TscAI	CASTG	2 cut(s)	824, 976
TseFI	GTSAC	2 cut(s)	3, 431
Tsp45I	GTSAC	2 cut(s)	3, 431
TspDTI	ATGAA	2 cut(s)	679, 722
TspRI	CASTG	2 cut(s)	824, 976
VpaK11BI	GGWCC	1 cut(s)	623
XapI	RAATTY	1 cut(s)	1001
XcmI	CCANNNNNNNNNTGG	1 cut(s)	359
XmnI	GAANNNNTTC	1 cut(s)	571
XspI	CTAG	3 cut(s)	93, 153, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.