Rroxscaffold_5G00378560

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001120
Physical Location & Seq
Forward (+)
59020483 .. 59021044
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378560.1

Sequence Viewer

Length: 492 bp
ATGTCACCACCTCAAATTCCTTCTTCTCTTCCCCAACACTCGCAACAATTTGAGCTCAGCCAAGAAACCAGAGACCTAATATCCACGCTTCCTACTGAGAAAGGATTGATTTCAGGTCATTACATCAGTACCAGGGCTTTTGGTACCCCACTATGCGTATCCAAAAAGCACCACTTGGCTCAAGGCAATTCTGTTTGCGCTAGTAAAGCGAGTGCACTATCATCCAGACCAACAAAACATGGACCACCGTACCCTTTGCTCACAAACAACCCTCATGTTCTTGTGCCCTTCTTGGAGAATAAGCAGTCCGGTAAGAACAAGATTCCTGACCCCACCTCCTATGCCCCTCCCAGGCTCTTTTCAACTCACTTACCACTAGCGCATCTGCCACAATCTGTTAAAGACTCTGCTTGCAAGGTCATCTATCTGTGTAGAAACCCTAAGGACATAATAGTTTCACTTTGGCACTTCACAAACAGAGTGAGAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

163

Amino Acids

18.02

Weight (kDa)

9.77

Isoelectric Point (pI)

54.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 85 - 161 4.1e-20 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 15
AfaI GTAC 3 cut(s) 130, 145, 251
AfiI CCNNNNNNNGG 1 cut(s) 351
AgsI TTSAA 1 cut(s) 363
AjnI CCWGG 2 cut(s) 131, 350
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw21I GWGCWC 2 cut(s) 57, 217
Alw26I GTCTC 1 cut(s) 66
Alw44I GTGCAC 1 cut(s) 213
ApaLI GTGCAC 1 cut(s) 213
ApoI RAATTY 1 cut(s) 15
Asp718I GGTACC 1 cut(s) 143
AspLEI GCGC 2 cut(s) 200, 382
AspS9I GGNCC 1 cut(s) 242
AvaII GGWCC 1 cut(s) 242
AxyI CCTNAGG 1 cut(s) 441
BaeGI GKGCMC 2 cut(s) 217, 288
BaeI ACNNNNGTAYC 4 cut(s) 112, 145, 233, 266
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 2 cut(s) 57, 217
BciT130I CCWGG 2 cut(s) 133, 352
BciVI GTATCC 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 2 cut(s) 201, 377
BfuI GTATCC 1 cut(s) 169
BlpI GCTNAGC 1 cut(s) 56
Bme1390I CCNGG 2 cut(s) 133, 352
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 2 cut(s) 133, 352
BmsI GCATC 1 cut(s) 391
Bpu1102I GCTNAGC 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 132, 350
BsaWI WCCGGW 1 cut(s) 308
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse21I CCTNAGG 1 cut(s) 441
BseBI CCWGG 2 cut(s) 133, 352
BseDI CCNNGG 2 cut(s) 132, 350
BseGI GGATG 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMII CTCAG 2 cut(s) 70, 87
BseSI GKGCMC 2 cut(s) 217, 288
BshNI GGYRCC 1 cut(s) 143
BsiHKAI GWGCWC 2 cut(s) 57, 217
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 351
BsmAI GTCTC 1 cut(s) 66
Bso31I GGTCTC 1 cut(s) 66
Bsp1286I GDGCHC 3 cut(s) 57, 217, 288
Bsp1720I GCTNAGC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 69, 88
BspLI GGNNCC 1 cut(s) 145
BspT107I GGYRCC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 132, 350
Bst2UI CCWGG 2 cut(s) 133, 352
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 3 cut(s) 56, 96, 441
BstF5I GGATG 1 cut(s) 221
BstHHI GCGC 2 cut(s) 200, 382
BstMAI GTCTC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 2 cut(s) 133, 352
BstSCI CCNGG 2 cut(s) 131, 350
BstSLI GKGCMC 2 cut(s) 217, 288
Bsu36I CCTNAGG 1 cut(s) 441
BsuI GTATCC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 412
CfoI GCGC 2 cut(s) 200, 382
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 3 cut(s) 129, 144, 250
CviAII CATG 2 cut(s) 239, 275
CviJI RGCY 5 cut(s) 55, 60, 137, 179, 355
CviKI_1 RGCY 5 cut(s) 55, 60, 137, 179, 355
CviQI GTAC 3 cut(s) 129, 144, 250
DdeI CTNAG 3 cut(s) 56, 96, 441
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 242
Eco53kI GAGCTC 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 441
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 131, 350
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 2 cut(s) 242, 278
FaiI YATR 5 cut(s) 154, 240, 276, 342, 449
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 2 cut(s) 238, 274
FokI GGATG 1 cut(s) 208
FriOI GRGCYC 1 cut(s) 57
FspBI CTAG 2 cut(s) 201, 377
GlaI GCGC 2 cut(s) 199, 381
HapII CCGG 1 cut(s) 309
HhaI GCGC 2 cut(s) 200, 382
Hin1II CATG 2 cut(s) 242, 278
Hin6I GCGC 2 cut(s) 198, 380
HinP1I GCGC 2 cut(s) 198, 380
HinfI GANTC 2 cut(s) 322, 404
HpaII CCGG 1 cut(s) 309
Hpy166II GTNNAC 1 cut(s) 215
Hpy188III TCNNGA 2 cut(s) 225, 326
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 30, 298
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4V TGCA 2 cut(s) 215, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 3 cut(s) 56, 96, 441
Hsp92II CATG 2 cut(s) 242, 278
HspAI GCGC 2 cut(s) 198, 380
KpnI GGTACC 1 cut(s) 147
LpnPI CCDG 9 cut(s) 82, 99, 118, 145, 238, 322, 337, 339, 364
LweI GCATC 1 cut(s) 391
MaeI CTAG 2 cut(s) 201, 377
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 2 cut(s) 15, 20
MhlI GDGCHC 3 cut(s) 57, 217, 288
MluCI AATT 3 cut(s) 15, 47, 187
MlyI GAGTC 1 cut(s) 398
MnlI CCTC 4 cut(s) 21, 282, 346, 357
MseI TTAA 1 cut(s) 399
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 2 cut(s) 133, 352
MvaI CCWGG 2 cut(s) 133, 352
MwoI GCNNNNNNNGC 1 cut(s) 206
NlaIII CATG 2 cut(s) 242, 278
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 3
PfeI GAWTC 1 cut(s) 322
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 131, 350
PspGI CCWGG 2 cut(s) 131, 350
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 242
RsaI GTAC 3 cut(s) 130, 145, 251
RsaNI GTAC 3 cut(s) 129, 144, 250
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 399
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 2 cut(s) 133, 352
SduI GDGCHC 3 cut(s) 57, 217, 288
SetI ASST 6 cut(s) 13, 57, 78, 118, 338, 420
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
Sse9I AATT 3 cut(s) 15, 47, 187
SspMI CTAG 2 cut(s) 201, 377
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 131, 350
TaaI ACNGT 1 cut(s) 249
TasI AATT 3 cut(s) 15, 47, 187
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
VneI GTGCAC 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 1 cut(s) 15
XspI CTAG 2 cut(s) 201, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.