FvH4_4g29331

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001120
Physical Location & Seq
Forward (+)
29507969 .. 29509553
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g29331.t1

Sequence Viewer

Length: 1005 bp
ATGTCACTAACTCAGCCTCCTCCAGCTCTTCCCCAATACTTGCAAGAAAATGAGATCAGCCAAGAAACCAGAGACATGATATCTACTCTACCTAGAGATCAAGGTTGGGTTGTAAGTCATCTCTATCAGTACCAAGGCTTTTGGCACTCAACTAGGCAGATAGAAGGAGTCTTGGCGTGCCAAGAAAACTTCCGAGCTCAAGATTCTGATATCTTACTTGTTACTACTCCCAAATCAGGTACCACTTGGCTTAAGGCAATCTTGTTTTCCCTTGTGAAACGAGGAGAGTATTATCATCCAGACCCTAAAGACCACCCCTTCCTCACGAAAAACCCTCATGTTCTTGTGCCCTTCTTGGAGCTTGGTCTGTACCTTCAGAAACCGGTACCTGACCTCGCCTCCTATGCCCCTCCTCGGCTCTTTTCAACTCACTTACCACTTGTGTCTCTACCGGAATCAGTCAAAGACTCTGCTTGCAAGGTTGTCTATCTGTGTAGGAACCCTAAGGACACATTTGTTTCACTCTGGCACTTCGCAAACAGATTGAGACCCGAGAGTCGGGGAAGCATTTCACTTGAAGAAGCTTTAGAATTGTTCTGCAGGGGAGTGAGTTTGTATGGACCCTTCTGGGATCATGTTTTGGGGTACTGGAATGAGAGCTTGAAAAGGCCTCAAAGTGTATTTTTCATCAAATATGAGGAAATGAAAGAAGAAGAAGAAGCCGGTTCTCACTTGAGGAAGCTAGCTGAGTTCTTGGGGTGCCCATTTTCTCCAGAAGAAGAGGCACAAGGGGTGGTGGGCAACATCCTGAAGCATTGTAGTTTTGAGACTTTGAGCAATTTGGATGTGAACAAAAGAGGGAAGTTATCATCCGGCGAGGAGCATAGTGCTTTCTTTCGGCGAGGGGAGGCTGGAGATTGGAGGAATCAGTTGACTGCTGAGATGGCGGAACAGATAGACCGTATCACTGAAGAGAAGTTGCAAGGTTCTGGATTGAAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

335

Amino Acids

38.25

Weight (kDa)

5.81

Isoelectric Point (pI)

56.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 68 - 331 3.2e-75 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 555
Acc65I GGTACC 2 cut(s) 239, 385
AccB1I GGYRCC 3 cut(s) 239, 385, 759
AciI CCGC 1 cut(s) 947
AclWI GGATC 1 cut(s) 639
AcsI RAATTY 1 cut(s) 998
AcuI CTGAAG 3 cut(s) 359, 830, 990
AfaI GTAC 5 cut(s) 131, 241, 371, 387, 647
AfiI CCNNNNNNNGG 3 cut(s) 236, 414, 558
AflII CTTAAG 1 cut(s) 251
AgeI ACCGGT 1 cut(s) 382
AgsI TTSAA 4 cut(s) 426, 578, 664, 997
AluBI AGCT 7 cut(s) 26, 197, 361, 584, 660, 742, 746
AluI AGCT 7 cut(s) 26, 197, 361, 584, 660, 742, 746
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 4 cut(s) 66, 450, 541, 821
AlwI GGATC 1 cut(s) 639
Ama87I CYCGRG 1 cut(s) 551
AoxI GGCC 1 cut(s) 668
ApoI RAATTY 1 cut(s) 998
AsiGI ACCGGT 1 cut(s) 382
Asp700I GAANNNNTTC 1 cut(s) 568
Asp718I GGTACC 2 cut(s) 239, 385
AspS9I GGNCC 1 cut(s) 620
AsuNHI GCTAGC 1 cut(s) 742
AvaI CYCGRG 1 cut(s) 551
AvaII GGWCC 1 cut(s) 620
AxyI CCTNAGG 1 cut(s) 504
BaeGI GKGCMC 2 cut(s) 351, 764
BanI GGYRCC 3 cut(s) 239, 385, 759
BanII GRGCYC 1 cut(s) 199
BarI GAAGNNNNNNTAC 2 cut(s) 608, 640
Bbv12I GWGCWC 1 cut(s) 199
BccI CCATC 1 cut(s) 937
BcoDI GTCTC 4 cut(s) 66, 450, 541, 821
BfaI CTAG 3 cut(s) 93, 153, 743
BfmI CTRYAG 1 cut(s) 598
BfrI CTTAAG 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 620
BmeT110I CYCGRG 1 cut(s) 551
BmgT120I GGNCC 1 cut(s) 620
BmiI GGNNCC 5 cut(s) 241, 387, 500, 622, 761
BmtI GCTAGC 1 cut(s) 746
BpmI CTGGAG 3 cut(s) 6, 756, 933
BpuEI CTTGAG 2 cut(s) 183, 754
BsaI GGTCTC 1 cut(s) 541
BsaJI CCNNGG 2 cut(s) 133, 413
BsaWI WCCGGW 2 cut(s) 382, 451
BsaXI ACNNNNNCTCC 3 cut(s) 31, 383, 413
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 414, 558
Bse118I RCCGGY 2 cut(s) 382, 722
Bse1I ACTGG 1 cut(s) 653
Bse21I CCTNAGG 1 cut(s) 504
BseDI CCNNGG 2 cut(s) 133, 413
BseGI GGATG 4 cut(s) 295, 804, 850, 869
BseLI CCNNNNNNNGG 3 cut(s) 236, 414, 558
BseMII CTCAG 3 cut(s) 26, 738, 930
BseNI ACTGG 1 cut(s) 653
BseRI GAGGAG 4 cut(s) 9, 297, 402, 893
BseSI GKGCMC 2 cut(s) 351, 764
BshFI GGCC 1 cut(s) 670
BshNI GGYRCC 3 cut(s) 239, 385, 759
BshTI ACCGGT 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 551
BsiSI CCGG 4 cut(s) 383, 452, 723, 873
BslI CCNNNNNNNGG 3 cut(s) 236, 414, 558
BsmAI GTCTC 4 cut(s) 66, 450, 541, 821
BsnI GGCC 1 cut(s) 670
Bso31I GGTCTC 1 cut(s) 541
BsoBI CYCGRG 1 cut(s) 551
Bsp1286I GDGCHC 3 cut(s) 199, 351, 764
Bsp143I GATC 3 cut(s) 54, 97, 631
BspACI CCGC 1 cut(s) 947
BspANI GGCC 1 cut(s) 670
BspCNI CTCAG 3 cut(s) 25, 739, 931
BspLI GGNNCC 5 cut(s) 241, 387, 500, 622, 761
BspMAI CTGCAG 1 cut(s) 602
BspOI GCTAGC 1 cut(s) 746
BspPI GGATC 1 cut(s) 639
BspQI GCTCTTC 1 cut(s) 33
BspT107I GGYRCC 3 cut(s) 239, 385, 759
BspTI CTTAAG 1 cut(s) 251
BspTNI GGTCTC 1 cut(s) 541
BsrFI RCCGGY 2 cut(s) 382, 722
BsrI ACTGG 1 cut(s) 653
BssAI RCCGGY 2 cut(s) 382, 722
BssECI CCNNGG 2 cut(s) 133, 413
BssMI GATC 3 cut(s) 54, 97, 631
BssT1I CCWWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 962
Bst6I CTCTTC 3 cut(s) 33, 774, 966
BstAFI CTTAAG 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 178, 475, 744
BstDEI CTNAG 4 cut(s) 12, 504, 747, 939
BstF5I GGATG 4 cut(s) 295, 804, 850, 869
BstKTI GATC 3 cut(s) 57, 100, 634
BstMAI GTCTC 4 cut(s) 66, 450, 541, 821
BstMBI GATC 3 cut(s) 54, 97, 631
BstMWI GCNNNNNNNGC 2 cut(s) 404, 944
BstSFI CTRYAG 1 cut(s) 598
BstSLI GKGCMC 2 cut(s) 351, 764
Bsu36I CCTNAGG 1 cut(s) 504
BsuRI GGCC 1 cut(s) 670
BtsCI GGATG 4 cut(s) 295, 804, 850, 869
BtsIMutI CAGTG 1 cut(s) 966
Cac8I GCNNGC 3 cut(s) 178, 475, 744
Cfr10I RCCGGY 2 cut(s) 382, 722
Cfr13I GGNCC 1 cut(s) 620
Csp6I GTAC 5 cut(s) 130, 240, 370, 386, 646
CspAI ACCGGT 1 cut(s) 382
CviAII CATG 3 cut(s) 76, 338, 635
CviQI GTAC 5 cut(s) 130, 240, 370, 386, 646
DdeI CTNAG 4 cut(s) 12, 504, 747, 939
DpnI GATC 3 cut(s) 56, 99, 633
DpnII GATC 3 cut(s) 54, 97, 631
DrdI GACNNNNNNGTC 1 cut(s) 555
DseDI GACNNNNNNGTC 1 cut(s) 555
Eam1104I CTCTTC 3 cut(s) 33, 774, 966
EarI CTCTTC 3 cut(s) 33, 774, 966
EciI GGCGGA 1 cut(s) 962
Ecl136II GAGCTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 133
Eco147I AGGCCT 1 cut(s) 670
Eco24I GRGCYC 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 541
Eco32I GATATC 2 cut(s) 81, 211
Eco47I GGWCC 1 cut(s) 620
Eco53kI GAGCTC 1 cut(s) 197
Eco57I CTGAAG 3 cut(s) 359, 830, 990
Eco81I CCTNAGG 1 cut(s) 504
Eco88I CYCGRG 1 cut(s) 551
EcoICRI GAGCTC 1 cut(s) 197
EcoRV GATATC 2 cut(s) 81, 211
EcoT14I CCWWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 3 cut(s) 79, 341, 638
FaiI YATR 7 cut(s) 77, 339, 405, 618, 636, 696, 885
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 3 cut(s) 75, 337, 634
FokI GGATG 4 cut(s) 282, 791, 856, 857
FriOI GRGCYC 1 cut(s) 199
FspBI CTAG 3 cut(s) 93, 153, 743
GsuI CTGGAG 3 cut(s) 6, 756, 933
HaeIII GGCC 1 cut(s) 670
HapII CCGG 4 cut(s) 383, 452, 723, 873
Hin1II CATG 3 cut(s) 79, 341, 638
HincII GTYRAC 1 cut(s) 933
HindII GTYRAC 1 cut(s) 933
HindIII AAGCTT 1 cut(s) 582
HinfI GANTC 6 cut(s) 168, 203, 455, 467, 556, 925
HpaII CCGG 4 cut(s) 383, 452, 723, 873
Hpy166II GTNNAC 2 cut(s) 850, 933
Hpy188I TCNGA 3 cut(s) 194, 208, 378
Hpy188III TCNNGA 6 cut(s) 200, 299, 325, 773, 808, 990
Hpy8I GTNNAC 2 cut(s) 850, 933
HpyAV CCTTC 5 cut(s) 158, 328, 361, 383, 634
HpyCH4III ACNGT 1 cut(s) 962
HpyCH4V TGCA 4 cut(s) 43, 477, 600, 982
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 944
HpyF3I CTNAG 4 cut(s) 12, 504, 747, 939
Hsp92II CATG 3 cut(s) 79, 341, 638
KpnI GGTACC 2 cut(s) 243, 389
Kzo9I GATC 3 cut(s) 54, 97, 631
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 2 cut(s) 358, 880
MaeI CTAG 3 cut(s) 93, 153, 743
MaeIII GTNAC 2 cut(s) 3, 220
MalI GATC 3 cut(s) 56, 99, 633
MboI GATC 3 cut(s) 54, 97, 631
MboII GAAGA 8 cut(s) 20, 590, 722, 725, 728, 788, 791, 983
MhlI GDGCHC 3 cut(s) 199, 351, 764
MluCI AATT 3 cut(s) 590, 838, 998
MlyI GAGTC 3 cut(s) 177, 461, 565
MroXI GAANNNNTTC 1 cut(s) 568
MseI TTAA 2 cut(s) 252, 1003
MspCI CTTAAG 1 cut(s) 251
MspI CCGG 4 cut(s) 383, 452, 723, 873
MwoI GCNNNNNNNGC 2 cut(s) 404, 944
NdeII GATC 3 cut(s) 54, 97, 631
NheI GCTAGC 1 cut(s) 742
NlaIII CATG 3 cut(s) 79, 341, 638
NlaIV GGNNCC 5 cut(s) 241, 387, 500, 622, 761
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 3
PceI AGGCCT 1 cut(s) 670
PciSI GCTCTTC 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 568
PfeI GAWTC 3 cut(s) 203, 455, 925
PinAI ACCGGT 1 cut(s) 382
PleI GAGTC 3 cut(s) 176, 461, 564
PpsI GAGTC 3 cut(s) 176, 461, 564
Psp124BI GAGCTC 1 cut(s) 199
PspN4I GGNNCC 5 cut(s) 241, 387, 500, 622, 761
PspPI GGNCC 1 cut(s) 620
PstI CTGCAG 1 cut(s) 602
RsaI GTAC 5 cut(s) 131, 241, 371, 387, 647
RsaNI GTAC 5 cut(s) 130, 240, 370, 386, 646
SacI GAGCTC 1 cut(s) 199
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 2 cut(s) 252, 1003
Sau3AI GATC 3 cut(s) 54, 97, 631
Sau96I GGNCC 1 cut(s) 620
SchI GAGTC 3 cut(s) 177, 461, 565
SduI GDGCHC 3 cut(s) 199, 351, 764
SfcI CTRYAG 1 cut(s) 598
SinI GGWCC 1 cut(s) 620
SmlI CTYRAG 3 cut(s) 198, 251, 733
SmoI CTYRAG 3 cut(s) 198, 251, 733
Sse9I AATT 3 cut(s) 590, 838, 998
SseBI AGGCCT 1 cut(s) 670
SsiI CCGC 1 cut(s) 947
SspMI CTAG 3 cut(s) 93, 153, 743
SstI GAGCTC 1 cut(s) 199
StuI AGGCCT 1 cut(s) 670
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 962
TasI AATT 3 cut(s) 590, 838, 998
TfiI GAWTC 3 cut(s) 203, 455, 925
Tru1I TTAA 2 cut(s) 252, 1003
Tru9I TTAA 2 cut(s) 252, 1003
TscAI CASTG 1 cut(s) 973
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 676, 719
TspRI CASTG 1 cut(s) 973
Vha464I CTTAAG 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 620
XapI RAATTY 1 cut(s) 998
XmnI GAANNNNTTC 1 cut(s) 568
XspI CTAG 3 cut(s) 93, 153, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.