Rh4AG355300

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001120
Physical Location & Seq
Forward (+)
66365931 .. 66381370
15440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG355300.1

Sequence Viewer

Length: 1185 bp
ATGTCACTACCTCAAACTCCTCCTTCTCTTCCCCAATACTTGCAAGAAATTGAGCTCAGCCAAGAAACCAGAGACCTAATATCCACGCTTCCTGCTGAGAAAGGATTGATTTCAGGTCATTTACATCAGTACCAGGGCTTTTGGTACCCCACTATGCATATCCAAAAAGTTTTAGCCTCCCAAAAACACTTTCAAGCTCAAGATACTGATATCCTTCTCGCTACTACTCCCAAATCAGGCACCACTTGGCTCAAGGCAATTCTGTTTGCGCTAGTAAAGCGAGTGCACTATCATCCAGACCCACAAAACATGGACCACCCTTTGCTCACAAACAACCCTCATGTTCTTGTGCCCTTCTTGGAGAATAAGCATTCCGGTAAGAACCAGATTCCTGACCCCACCTCTTATGCTCCTCCCAGGCTCTTTTCAACTCACTTACCACTAGCGCATCTGCCACAATCTGTTAAAGACTCTGCTTGCAAGGTTGTCTATCTGTGTAGAAACCCTAAGGACATAATAGTTTCACTTTGGCACTTCACAAACAGAGTGAGACACAAGAGTATGGGAACCAATTCACTTGAAGAAGTTTTCGAATACTTCCGCAGGGGAGTGAGTGGGTATGGACCCTTTTGGGATCATGTGTTGGGCTACTGGAAGGAAAGCTTGGAAGGGCCTGAAACGGTGTTCTTCCTCAAATATGAGGAAATGAAAGAAAAACCTGGTCTGCAGTTGAGGAGACTAGCTGAGTTCTTGGGGTGCCCATTTTCACCGAAAGAAGAGGCACAGGGAGTGGTGGACAATATCTTAAGGCTGTGTAGTTTTGAGAATTTGAGCAATTTGGATGTGAACAAAAATGAGAAATTATCGACAGGGATGGAGAATAGTGCATTCTTTCGGCGAGGGGAGGCGGGAGACTGGAGGAATTATTTGACAGCTGAGATGGTGGAACAGCTAGACCGTATCATTGAAGAGAAGTTGCAAGTCAGTGAGTTAGGTGATAAGTACCCAAAATATGTGATAGAAGTTAGGGAAGGACCAGCTAGCAGGGCGAGAGAAGACGAGTCGTTCCTTTCATGGTACGGCTTCGAACGTGACAGGGGACAAATCTGGGCTTCGCTTCCATCAATCACTCAGTTTTGGGCTTCGGGGAAGAAAGACTGTTGTGGACTAAGAAGGCCCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

394

Amino Acids

45.36

Weight (kDa)

6.71

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 68 - 327 6.6e-77 Sulfotransferase domain
Sulfotransfer_3 PF13469 161 - 256 1.6e-06 Sulfotransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 3 cut(s) 144, 239, 756
AciI CCGC 2 cut(s) 601, 908
AclWI GGATC 1 cut(s) 642
AcsI RAATTY 1 cut(s) 826
AfaI GTAC 4 cut(s) 131, 146, 1004, 1079
AfiI CCNNNNNNNGG 1 cut(s) 236
AflII CTTAAG 1 cut(s) 805
AgsI TTSAA 4 cut(s) 194, 429, 581, 968
AjnI CCWGG 3 cut(s) 132, 416, 718
AjuI GAANNNNNNNTTGG 4 cut(s) 174, 206, 647, 679
AluBI AGCT 7 cut(s) 55, 197, 663, 743, 935, 952, 1040
AluI AGCT 7 cut(s) 55, 197, 663, 743, 935, 952, 1040
Alw21I GWGCWC 2 cut(s) 57, 288
Alw26I GTCTC 4 cut(s) 66, 544, 730, 906
Alw44I GTGCAC 1 cut(s) 284
AlwI GGATC 1 cut(s) 642
AoxI GGCC 2 cut(s) 671, 1175
ApaLI GTGCAC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 826
Asp700I GAANNNNTTC 1 cut(s) 571
Asp718I GGTACC 1 cut(s) 144
AspLEI GCGC 2 cut(s) 271, 448
AspS9I GGNCC 5 cut(s) 313, 623, 671, 1034, 1176
AsuHPI GGTGA 2 cut(s) 759, 1007
AsuII TTCGAA 2 cut(s) 591, 1086
AsuNHI GCTAGC 1 cut(s) 1040
AvaII GGWCC 3 cut(s) 313, 623, 1034
AxyI CCTNAGG 1 cut(s) 507
BaeGI GKGCMC 3 cut(s) 288, 354, 761
BaeI ACNNNNGTAYC 2 cut(s) 113, 146
BanI GGYRCC 3 cut(s) 144, 239, 756
BanII GRGCYC 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 1062
Bbv12I GWGCWC 2 cut(s) 57, 288
BccI CCATC 3 cut(s) 868, 934, 1129
BceAI ACGGC 1 cut(s) 1096
BciT130I CCWGG 3 cut(s) 134, 418, 720
BcoDI GTCTC 4 cut(s) 66, 544, 730, 906
BfaI CTAG 6 cut(s) 272, 443, 740, 953, 1041, 1183
BfmI CTRYAG 1 cut(s) 725
BfrI CTTAAG 1 cut(s) 805
BlpI GCTNAGC 1 cut(s) 56
Bme1390I CCNGG 3 cut(s) 134, 418, 720
Bme18I GGWCC 3 cut(s) 313, 623, 1034
BmgT120I GGNCC 5 cut(s) 313, 623, 671, 1034, 1176
BmiI GGNNCC 5 cut(s) 146, 241, 568, 625, 758
BmrFI CCNGG 3 cut(s) 134, 418, 720
BmsI GCATC 1 cut(s) 457
BmtI GCTAGC 1 cut(s) 1044
BpiI GAAGAC 1 cut(s) 1062
BpmI CTGGAG 1 cut(s) 937
Bpu1102I GCTNAGC 1 cut(s) 56
Bpu14I TTCGAA 2 cut(s) 591, 1086
BpuEI CTTGAG 2 cut(s) 183, 236
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 133, 416
BsaWI WCCGGW 1 cut(s) 374
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 2 cut(s) 656, 920
Bse21I CCTNAGG 1 cut(s) 507
BseBI CCWGG 3 cut(s) 134, 418, 720
BseDI CCNNGG 2 cut(s) 133, 416
BseGI GGATG 3 cut(s) 292, 847, 879
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 5 cut(s) 70, 87, 735, 927, 1145
BseNI ACTGG 2 cut(s) 656, 920
BseRI GAGGAG 3 cut(s) 9, 402, 748
BseSI GKGCMC 3 cut(s) 288, 354, 761
BshFI GGCC 2 cut(s) 673, 1177
BshNI GGYRCC 3 cut(s) 144, 239, 756
BsiHKAI GWGCWC 2 cut(s) 57, 288
BsiSI CCGG 1 cut(s) 375
BslFI GGGAC 1 cut(s) 1113
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 4 cut(s) 66, 544, 730, 906
BsmFI GGGAC 1 cut(s) 1113
BsmI GAATGC 2 cut(s) 370, 887
BsnI GGCC 2 cut(s) 673, 1177
Bso31I GGTCTC 1 cut(s) 66
Bsp119I TTCGAA 2 cut(s) 591, 1086
Bsp1286I GDGCHC 4 cut(s) 57, 288, 354, 761
Bsp143I GATC 1 cut(s) 634
Bsp1720I GCTNAGC 1 cut(s) 56
BspACI CCGC 2 cut(s) 601, 908
BspANI GGCC 2 cut(s) 673, 1177
BspCNI CTCAG 5 cut(s) 69, 88, 736, 928, 1144
BspLI GGNNCC 5 cut(s) 146, 241, 568, 625, 758
BspMAI CTGCAG 1 cut(s) 729
BspOI GCTAGC 1 cut(s) 1044
BspPI GGATC 1 cut(s) 642
BspT104I TTCGAA 2 cut(s) 591, 1086
BspT107I GGYRCC 3 cut(s) 144, 239, 756
BspTI CTTAAG 1 cut(s) 805
BspTNI GGTCTC 1 cut(s) 66
BsrI ACTGG 2 cut(s) 656, 920
BssECI CCNNGG 2 cut(s) 133, 416
BssMI GATC 1 cut(s) 634
Bst2UI CCWGG 3 cut(s) 134, 418, 720
Bst4CI ACNGT 3 cut(s) 682, 959, 1160
Bst6I CTCTTC 3 cut(s) 33, 771, 963
BstAFI CTTAAG 1 cut(s) 805
BstBI TTCGAA 2 cut(s) 591, 1086
BstC8I GCNNGC 2 cut(s) 478, 1042
BstDEI CTNAG 7 cut(s) 56, 96, 507, 744, 936, 1131, 1169
BstF5I GGATG 3 cut(s) 292, 847, 879
BstHHI GCGC 2 cut(s) 271, 448
BstKTI GATC 1 cut(s) 637
BstMAI GTCTC 4 cut(s) 66, 544, 730, 906
BstMBI GATC 1 cut(s) 634
BstMWI GCNNNNNNNGC 2 cut(s) 277, 1046
BstNI CCWGG 3 cut(s) 134, 418, 720
BstSCI CCNGG 3 cut(s) 132, 416, 718
BstSFI CTRYAG 1 cut(s) 725
BstSLI GKGCMC 3 cut(s) 288, 354, 761
BstV2I GAAGAC 1 cut(s) 1062
Bsu36I CCTNAGG 1 cut(s) 507
BsuRI GGCC 2 cut(s) 673, 1177
BtsCI GGATG 3 cut(s) 292, 847, 879
BtsIMutI CAGTG 1 cut(s) 991
Cac8I GCNNGC 2 cut(s) 478, 1042
CfoI GCGC 2 cut(s) 271, 448
Cfr13I GGNCC 5 cut(s) 313, 623, 671, 1034, 1176
CsiI ACCWGGT 1 cut(s) 718
Csp6I GTAC 4 cut(s) 130, 145, 1003, 1078
CviAII CATG 4 cut(s) 310, 341, 638, 1074
CviQI GTAC 4 cut(s) 130, 145, 1003, 1078
DdeI CTNAG 7 cut(s) 56, 96, 507, 744, 936, 1131, 1169
DpnI GATC 1 cut(s) 636
DpnII GATC 1 cut(s) 634
Eam1104I CTCTTC 3 cut(s) 33, 771, 963
EarI CTCTTC 3 cut(s) 33, 771, 963
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 211
Eco47I GGWCC 3 cut(s) 313, 623, 1034
Eco53kI GAGCTC 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 507
EcoICRI GAGCTC 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 671
EcoRII CCWGG 3 cut(s) 132, 416, 718
EcoRV GATATC 1 cut(s) 211
EcoT22I ATGCAT 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 4 cut(s) 313, 344, 641, 1077
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FaqI GGGAC 1 cut(s) 1113
FatI CATG 4 cut(s) 309, 340, 637, 1073
FauI CCCGC 1 cut(s) 901
FokI GGATG 3 cut(s) 279, 854, 886
FriOI GRGCYC 1 cut(s) 57
FspBI CTAG 6 cut(s) 272, 443, 740, 953, 1041, 1183
GlaI GCGC 2 cut(s) 270, 447
GsuI CTGGAG 1 cut(s) 937
HaeIII GGCC 2 cut(s) 673, 1177
HapII CCGG 1 cut(s) 375
HhaI GCGC 2 cut(s) 271, 448
Hin1II CATG 4 cut(s) 313, 344, 641, 1077
Hin6I GCGC 2 cut(s) 269, 446
HinP1I GCGC 2 cut(s) 269, 446
HindIII AAGCTT 1 cut(s) 661
HinfI GANTC 3 cut(s) 388, 470, 1061
HpaII CCGG 1 cut(s) 375
HphI GGTGA 2 cut(s) 759, 1007
Hpy166II GTNNAC 4 cut(s) 286, 796, 847, 1166
Hpy188III TCNNGA 3 cut(s) 200, 296, 392
Hpy8I GTNNAC 4 cut(s) 286, 796, 847, 1166
HpyAV CCTTC 7 cut(s) 33, 224, 364, 649, 662, 1025, 1167
HpyCH4III ACNGT 3 cut(s) 682, 959, 1160
HpyCH4IV ACGT 1 cut(s) 1090
HpyCH4V TGCA 7 cut(s) 43, 157, 286, 480, 727, 887, 979
HpyF10VI GCNNNNNNNGC 2 cut(s) 277, 1046
HpyF3I CTNAG 7 cut(s) 56, 96, 507, 744, 936, 1131, 1169
HpySE526I ACGT 1 cut(s) 1090
Hsp92II CATG 4 cut(s) 313, 344, 641, 1077
HspAI GCGC 2 cut(s) 269, 446
KpnI GGTACC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 634
LmnI GCTCC 1 cut(s) 415
LweI GCATC 1 cut(s) 457
MabI ACCWGGT 1 cut(s) 718
MaeI CTAG 6 cut(s) 272, 443, 740, 953, 1041, 1183
MaeII ACGT 1 cut(s) 1090
MaeIII GTNAC 2 cut(s) 3, 1091
MalI GATC 1 cut(s) 636
MboI GATC 1 cut(s) 634
MboII GAAGA 7 cut(s) 20, 593, 679, 788, 980, 1067, 1162
MhlI GDGCHC 4 cut(s) 57, 288, 354, 761
MluCI AATT 7 cut(s) 48, 258, 571, 826, 835, 860, 922
MlyI GAGTC 2 cut(s) 464, 1070
Mph1103I ATGCAT 1 cut(s) 159
MroXI GAANNNNTTC 1 cut(s) 571
MseI TTAA 2 cut(s) 465, 806
MspA1I CMGCKG 1 cut(s) 935
MspCI CTTAAG 1 cut(s) 805
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 3 cut(s) 134, 418, 720
Mva1269I GAATGC 2 cut(s) 370, 887
MvaI CCWGG 3 cut(s) 134, 418, 720
MwoI GCNNNNNNNGC 2 cut(s) 277, 1046
NdeII GATC 1 cut(s) 634
NheI GCTAGC 1 cut(s) 1040
NlaIII CATG 4 cut(s) 313, 344, 641, 1077
NlaIV GGNNCC 5 cut(s) 146, 241, 568, 625, 758
NmuCI GTSAC 2 cut(s) 3, 1091
NsiI ATGCAT 1 cut(s) 159
NspV TTCGAA 2 cut(s) 591, 1086
PctI GAATGC 2 cut(s) 370, 887
PdmI GAANNNNTTC 1 cut(s) 571
PfeI GAWTC 1 cut(s) 388
PleI GAGTC 2 cut(s) 464, 1069
PpsI GAGTC 2 cut(s) 464, 1069
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 3 cut(s) 132, 416, 718
PspGI CCWGG 3 cut(s) 132, 416, 718
PspN4I GGNNCC 5 cut(s) 146, 241, 568, 625, 758
PspPI GGNCC 5 cut(s) 313, 623, 671, 1034, 1176
PstI CTGCAG 1 cut(s) 729
PvuII CAGCTG 1 cut(s) 935
RsaI GTAC 4 cut(s) 131, 146, 1004, 1079
RsaNI GTAC 4 cut(s) 130, 145, 1003, 1078
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 465, 806
Sau3AI GATC 1 cut(s) 634
Sau96I GGNCC 5 cut(s) 313, 623, 671, 1034, 1176
SchI GAGTC 2 cut(s) 464, 1070
ScrFI CCNGG 3 cut(s) 134, 418, 720
SduI GDGCHC 4 cut(s) 57, 288, 354, 761
SexAI ACCWGGT 1 cut(s) 718
SfaNI GCATC 1 cut(s) 457
SfcI CTRYAG 1 cut(s) 725
SfuI TTCGAA 2 cut(s) 591, 1086
SinI GGWCC 3 cut(s) 313, 623, 1034
SmlI CTYRAG 3 cut(s) 198, 251, 805
SmoI CTYRAG 3 cut(s) 198, 251, 805
Sse9I AATT 7 cut(s) 48, 258, 571, 826, 835, 860, 922
SsiI CCGC 2 cut(s) 601, 908
SspMI CTAG 6 cut(s) 272, 443, 740, 953, 1041, 1183
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 3 cut(s) 132, 416, 718
TaaI ACNGT 3 cut(s) 682, 959, 1160
TaiI ACGT 1 cut(s) 1093
TaqI TCGA 3 cut(s) 591, 866, 1086
TasI AATT 7 cut(s) 48, 258, 571, 826, 835, 860, 922
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 2 cut(s) 465, 806
Tru9I TTAA 2 cut(s) 465, 806
TscAI CASTG 1 cut(s) 991
TseFI GTSAC 2 cut(s) 3, 1091
Tsp45I GTSAC 2 cut(s) 3, 1091
TspDTI ATGAA 2 cut(s) 722, 1062
TspRI CASTG 1 cut(s) 991
Vha464I CTTAAG 1 cut(s) 805
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 3 cut(s) 313, 623, 1034
XapI RAATTY 1 cut(s) 826
XmnI GAANNNNTTC 1 cut(s) 571
XspI CTAG 6 cut(s) 272, 443, 740, 953, 1041, 1183
Zsp2I ATGCAT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.