Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001120

Physical Location & Seq

Genomic Coordinates Forward (+)

47540255 .. 47541647

Gene Structure 1393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0300600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGACTAGTCTCAACTTCAATGACCAAGACGGTGTTTTGAGATCGATTACGGATGCTCCGCCAACTCATTACACACTAAAAATAGAGTCACTTTCGATGCTGACCAAAAATTCACTGGAGAAATATGAATCAGGGGAATTCGGAGCTGGAGGATACAAATGGAAACTTGTTTTTTATCCAAATGGAAACAAGAGCAAGAATGTTAAAGACCACATTTCTCTCTACCTGGTAATGGCCGGAGCAAATACTTCCCAGATTCACTGGGGTGTACATGCTGTTTTCAGGTTGTTTTTGCTTGATCAGAATACCGGCAACTACTTCGTTTTTCAGGAACAAAAGGAGAGGCGCTTTCATGCAATGAAGCTTGATTGGGGTTTCGATCAGTTTCTCTCCCTCAAAGATTTTACTGAAGCTTCCAATGGATTTCTCATGGATGATACCTGTGTGTTTGGGGCAGAGGTCTTTGTTTCTAAGGAAAGAAGCACGGGCAAAGGAGAGTGTCTGTCTATGGTGAAGGACGCGGTTATGTACAAACATGTTTGGAAGATTGACAGCTTCTCAAAGATAAACACAGACTGCCATGACTCCAAGACTTTCAGTTCTGGAGACCAGAAATGGAAGATACAACTCTATCCCAAGGGAAAAGGCATTGGAACGGGTAGTCATCTTTCCCTTTATTTGGCATTGGCTGATCCTACTTCTCTACCTCCTGGTACTAAAATATATACAGAGTTTACCCTGCGCATCCTTGAACAAAAATTTCAATGGCATAAGTATAATAAAGGTAGTTTCTGGTTTAGTGCCTCAAATCCAGATTGGGGTTGGCAGAAATTCATTATACTAGAGTATCTCGGTAATACAGGCTTGGGGTATCTGGTGAAGGATACTTGCACTGTGGAGGCAGAGGTCACTGTCCGTGGAATTTCTAATGCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

312

Amino Acids

35.48

Weight (kDa)

8.17

Isoelectric Point (pI)

26.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	23 - 154	8.8e-38	MATH domain
MATH	PF00917	40 - 156	9e-11	MATH domain
TRAF-mep_MATH	PF21355	50 - 148	1.3e-07	TRAF/meprin, MATH domain
MATH_2	PF22486	178 - 303	4e-33	MATH domain
MATH	PF00917	183 - 305	8.4e-14	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28170 AT2G03760 AT2G27570 AT3G45070 AT3G45070 AT3G45070 AT3G45080 AT5G43690
fragaria_vesca	FvH4_4g29330 FvH4_4g29331 FvH4_4g29332 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29751
malus_domestica	MD16G1055600.v1.1 MD16G1055700.v1.1 MD16G1055800.v1.1 MD16G1056100.v1.1
prunus_persica	Prupe.1G293200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437381 RchiOBHm_Chr4g0437391 RchiOBHm_Chr7g0233341
rosa_laevigata	RLG00000006442 RLG00000013880
rosa_multiflora	Rmu_sc0004759.1_g000009 Rmu_sc0004759.1_g000010 Rmu_sc0010228.1_g000003 Rmu_sc0010228.1_g000005
rosa_roxburghii	Rroxscaffold_3G00227360 Rroxscaffold_5G00378530 Rroxscaffold_5G00378560 Rroxscaffold_5G00378630
rosa_rugosa	Rorug04G0300400 Rorug04G0300500 Rorug04G0300600 Rorug04G0301000
rosa_samantha	Rh4AG355300 Rh4BG365000 Rh4BG365100 Rh4BG365400 Rh4BG365500 Rh4CG379200 Rh4CG379300 Rh4CG379600 Rh4CG379700 Rh4DG359000 Rh4DG359100 Rh4DG359300 Rh5DG503800 Rh7CG455200
rosa_wichuraiana	Rw0G022450 Rw4G031140 Rw4G031170 Rw4G031180 Rw7G035860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	743
AccII	CGCG	1 cut(s)	521
AciI	CCGC	2 cut(s)	59, 521
AclWI	GGATC	1 cut(s)	686
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	5 cut(s)	109, 137, 758, 830, 921
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	3 cut(s)	270, 530, 715
AfiI	CCNNNNNNNGG	3 cut(s)	232, 679, 818
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	3 cut(s)	19, 752, 764
AhlI	ACTAGT	1 cut(s)	5
AjnI	CCWGG	2 cut(s)	225, 709
AleI	CACNNNNGTG	1 cut(s)	264
AluBI	AGCT	4 cut(s)	146, 364, 413, 555
AluI	AGCT	4 cut(s)	146, 364, 413, 555
Alw26I	GTCTC	2 cut(s)	14, 600
AlwI	GGATC	1 cut(s)	686
AoxI	GGCC	1 cut(s)	234
ApoI	RAATTY	5 cut(s)	109, 137, 758, 830, 921
AspLEI	GCGC	2 cut(s)	348, 744
AsuHPI	GGTGA	2 cut(s)	523, 889
BaeI	ACNNNNGTAYC	4 cut(s)	429, 462, 830, 863
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BciT130I	CCWGG	2 cut(s)	227, 711
BciVI	GTATCC	2 cut(s)	146, 877
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	14, 600
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	2 cut(s)	6, 842
BfmI	CTRYAG	1 cut(s)	935
BfoI	RGCGCY	1 cut(s)	349
BfuI	GTATCC	2 cut(s)	146, 877
Bme1390I	CCNGG	2 cut(s)	227, 711
BmrFI	CCNGG	2 cut(s)	227, 711
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	3 cut(s)	43, 87, 753
BmuI	ACTGGG	1 cut(s)	271
BpmI	CTGGAG	3 cut(s)	137, 168, 624
Bsa29I	ATCGAT	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	600
BsaJI	CCNNGG	2 cut(s)	636, 916
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 679, 818
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	2 cut(s)	120, 266
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	227, 711
BseCI	ATCGAT	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	636, 916
BseGI	GGATG	3 cut(s)	58, 439, 744
BseLI	CCNNNNNNNGG	3 cut(s)	232, 679, 818
BseMI	GCAATG	1 cut(s)	363
BseNI	ACTGG	2 cut(s)	120, 266
Bsh1236I	CGCG	1 cut(s)	521
BshFI	GGCC	1 cut(s)	236
BshVI	ATCGAT	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	237, 309
BslI	CCNNNNNNNGG	3 cut(s)	232, 679, 818
BsmAI	GTCTC	2 cut(s)	14, 600
BsnI	GGCC	1 cut(s)	236
Bso31I	GGTCTC	1 cut(s)	600
Bsp1407I	TGTACA	2 cut(s)	268, 528
Bsp143I	GATC	4 cut(s)	41, 298, 379, 691
BspACI	CCGC	2 cut(s)	59, 521
BspANI	GGCC	1 cut(s)	236
BspDI	ATCGAT	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	521
BspPI	GGATC	1 cut(s)	686
BspTNI	GGTCTC	1 cut(s)	600
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	308
BsrGI	TGTACA	2 cut(s)	268, 528
BsrI	ACTGG	2 cut(s)	120, 266
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	636, 916
BssMI	GATC	4 cut(s)	41, 298, 379, 691
BssT1I	CCWWGG	1 cut(s)	636
Bst2UI	CCWGG	2 cut(s)	227, 711
Bst4CI	ACNGT	3 cut(s)	32, 895, 913
BstAUI	TGTACA	2 cut(s)	268, 528
BstDEI	CTNAG	1 cut(s)	471
BstDSI	CCRYGG	1 cut(s)	916
BstF5I	GGATG	3 cut(s)	58, 439, 744
BstFNI	CGCG	1 cut(s)	521
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	2 cut(s)	348, 744
BstKTI	GATC	4 cut(s)	44, 301, 382, 694
BstMAI	GTCTC	2 cut(s)	14, 600
BstMBI	GATC	4 cut(s)	41, 298, 379, 691
BstNI	CCWGG	2 cut(s)	227, 711
BstNSI	RCATGY	2 cut(s)	275, 539
BstSCI	CCNGG	2 cut(s)	225, 709
BstSFI	CTRYAG	1 cut(s)	935
BstUI	CGCG	1 cut(s)	521
Bsu15I	ATCGAT	1 cut(s)	44
BsuI	GTATCC	2 cut(s)	146, 877
BsuRI	GGCC	1 cut(s)	236
BsuTUI	ATCGAT	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	916
BtsCI	GGATG	3 cut(s)	58, 439, 744
BtsIMutI	CAGTG	4 cut(s)	113, 259, 891, 909
CfoI	GCGC	2 cut(s)	348, 744
Cfr10I	RCCGGY	1 cut(s)	308
ClaI	ATCGAT	1 cut(s)	44
CseI	GACGC	1 cut(s)	527
CsiI	ACCWGGT	1 cut(s)	225
Csp6I	GTAC	3 cut(s)	269, 529, 714
CviAII	CATG	5 cut(s)	272, 353, 430, 536, 581
CviJI	RGCY	7 cut(s)	146, 236, 364, 413, 555, 689, 864
CviKI_1	RGCY	7 cut(s)	146, 236, 364, 413, 555, 689, 864
CviQI	GTAC	3 cut(s)	269, 529, 714
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	4 cut(s)	43, 300, 381, 693
DpnII	GATC	4 cut(s)	41, 298, 379, 691
EaeI	YGGCCR	1 cut(s)	234
EciI	GGCGGA	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	636
Eco31I	GGTCTC	1 cut(s)	600
Eco57I	CTGAAG	1 cut(s)	429
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	225, 709
EcoT14I	CCWWGG	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	636
FaeI	CATG	5 cut(s)	275, 356, 433, 539, 584
FatI	CATG	5 cut(s)	271, 352, 429, 535, 580
FbaI	TGATCA	1 cut(s)	298
FokI	GGATG	3 cut(s)	65, 446, 731
FspBI	CTAG	2 cut(s)	6, 842
FspI	TGCGCA	1 cut(s)	743
GlaI	GCGC	2 cut(s)	347, 743
GsuI	CTGGAG	3 cut(s)	137, 168, 624
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	236
HapII	CCGG	2 cut(s)	237, 309
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	2 cut(s)	348, 744
Hin1II	CATG	5 cut(s)	275, 356, 433, 539, 584
Hin6I	GCGC	2 cut(s)	346, 742
HinP1I	GCGC	2 cut(s)	346, 742
HindIII	AAGCTT	2 cut(s)	362, 411
HinfI	GANTC	4 cut(s)	86, 128, 256, 584
HpaII	CCGG	2 cut(s)	237, 309
HphI	GGTGA	2 cut(s)	523, 889
Hpy166II	GTNNAC	2 cut(s)	269, 735
Hpy188I	TCNGA	2 cut(s)	143, 303
Hpy188III	TCNNGA	3 cut(s)	329, 603, 812
Hpy8I	GTNNAC	2 cut(s)	269, 735
HpyAV	CCTTC	2 cut(s)	508, 874
HpyCH4III	ACNGT	3 cut(s)	32, 895, 913
HpyCH4V	TGCA	3 cut(s)	356, 891, 932
HpyF3I	CTNAG	1 cut(s)	471
Hsp92II	CATG	5 cut(s)	275, 356, 433, 539, 584
HspAI	GCGC	2 cut(s)	346, 742
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	41, 298, 379, 691
LmnI	GCTCC	3 cut(s)	61, 143, 239
LweI	GCATC	3 cut(s)	43, 87, 753
MabI	ACCWGGT	1 cut(s)	225
MaeI	CTAG	2 cut(s)	6, 842
MaeIII	GTNAC	2 cut(s)	87, 907
MalI	GATC	4 cut(s)	43, 300, 381, 693
MboI	GATC	4 cut(s)	41, 298, 379, 691
MboII	GAAGA	2 cut(s)	556, 631
MluCI	AATT	5 cut(s)	109, 137, 758, 830, 921
MlyI	GAGTC	2 cut(s)	95, 578
MnlI	CCTC	8 cut(s)	143, 336, 404, 451, 717, 814, 892, 898
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	2 cut(s)	237, 309
MspR9I	CCNGG	2 cut(s)	227, 711
MvaI	CCWGG	2 cut(s)	227, 711
MvnI	CGCG	1 cut(s)	521
NdeII	GATC	4 cut(s)	41, 298, 379, 691
NlaIII	CATG	5 cut(s)	275, 356, 433, 539, 584
NmuCI	GTSAC	2 cut(s)	87, 907
NsbI	TGCGCA	1 cut(s)	743
NspI	RCATGY	2 cut(s)	275, 539
OliI	CACNNNNGTG	1 cut(s)	264
PciI	ACATGT	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	128, 256
PleI	GAGTC	2 cut(s)	94, 578
PpsI	GAGTC	2 cut(s)	94, 578
PscI	ACATGT	1 cut(s)	535
Psp6I	CCWGG	2 cut(s)	225, 709
PspGI	CCWGG	2 cut(s)	225, 709
RsaI	GTAC	3 cut(s)	270, 530, 715
RsaNI	GTAC	3 cut(s)	269, 529, 714
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	204
Sau3AI	GATC	4 cut(s)	41, 298, 379, 691
SchI	GAGTC	2 cut(s)	95, 578
ScrFI	CCNGG	2 cut(s)	227, 711
SexAI	ACCWGGT	1 cut(s)	225
SfaNI	GCATC	3 cut(s)	43, 87, 753
SfcI	CTRYAG	1 cut(s)	935
SmiMI	CAYNNNNRTG	1 cut(s)	264
SpeI	ACTAGT	1 cut(s)	5
Sse9I	AATT	5 cut(s)	109, 137, 758, 830, 921
SsiI	CCGC	2 cut(s)	59, 521
SspMI	CTAG	2 cut(s)	6, 842
StyD4I	CCNGG	2 cut(s)	225, 709
StyI	CCWWGG	1 cut(s)	636
TaaI	ACNGT	3 cut(s)	32, 895, 913
TaqI	TCGA	3 cut(s)	44, 95, 378
TasI	AATT	5 cut(s)	109, 137, 758, 830, 921
TatI	WGTACW	2 cut(s)	268, 528
TfiI	GAWTC	2 cut(s)	128, 256
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	4 cut(s)	120, 266, 898, 916
TseFI	GTSAC	2 cut(s)	87, 907
Tsp45I	GTSAC	2 cut(s)	87, 907
TspDTI	ATGAA	4 cut(s)	141, 341, 374, 823
TspGWI	ACGGA	2 cut(s)	65, 905
TspRI	CASTG	4 cut(s)	120, 266, 898, 916
XapI	RAATTY	5 cut(s)	109, 137, 758, 830, 921
XceI	RCATGY	2 cut(s)	275, 539
XcmI	CCANNNNNNNNNTGG	2 cut(s)	112, 819
XspI	CTAG	2 cut(s)	6, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.