Rh5DG503800

Belongs to the sulfotransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001120
Physical Location & Seq
Reverse (-)
78804722 .. 78806186
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG503800.1

Sequence Viewer

Length: 1002 bp
ATGTCACTACCTCAAACTCCTTCTCTTCCCCAATACTTGCAAGAAAGTGAGCTCAGCCAAGAAACCAGAGACCTAATATCCACGCTACCTAAAGAGAAAGGTTTGATTTCAGATCATGTCCATCAGTACCAGGGATTTTGGTACCCAACTAGGCAGATCCAGGGAGTTTTAGCCTCCCAAAAACACTTTCAAGCCCAAGATACTGATATCCTTCTTGCTACTCCTCCAAAATCAGGCGCCACTTGGCTCAAGGCAATTTTGTTTTCCCTAGTGAAACGAGTGCCCTATCATCCTGATCCTCAGAACCAAGACCACCCTTTGCTCAAAAACAACCCACATTCTCTTGTGCCCTTCTTGGAGCTTGATCTCTACATCAAGAACCAGATCCCTGACCTCACCTCCTATAACCCTCCTCCCAGGGTCTTTTCAACTCACTTACCACTTGGATCTCTGCCGGAATCTGTCAAAGACTCTGCTTGCAAGGTTGTCTATCTGTGTAGAAACCCTAAGGACATAATAGTTTCAGTTTGGCACTTCGCAAACAAATTGAGGGCCAAGGGTAGGGGAACCACTTCACTTGAAGAAGTATTGGAAAGTTTCTGCAGCGGAGTGTATGCGTTTGGACCCCTTTGGGATCATGTGTTGGGTTATTGGAAGGAGAGCTTGGAAAGGCCTGAAACGGTGTTCTTCATCAAATTTGAGGAAATGAAAGAACAACCCGGTTTGCACTTGAGGAGGCTAGCTGAGTTCTTGGGGTGCCCATTTTCACCAGAAGAAGAGGCACAGGGAGTGGTGGACAATATCTTAAGGCTGTGTAGTTTTGAAAATTTGAGCAATTTGGATGTGAACAAAAACGGGAAACTATCGACAGGGGTGCAGAATAGTGCTTTCTTTCGGCGAGGCGAGGCGGGAGACTGGAGGAATTGTTTGACAGCTGAGATGGTGGAAAAGCTAGACCGCATCACTGAAGAGAAGTTGCAAGGTTCTGGATTCAAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

333

Amino Acids

37.91

Weight (kDa)

6.22

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 67 - 330 1.8e-74 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 141
AccB1I GGYRCC 3 cut(s) 141, 236, 756
AciI CCGC 3 cut(s) 606, 908, 958
AclWI GGATC 5 cut(s) 151, 290, 379, 454, 642
AcsI RAATTY 3 cut(s) 695, 826, 995
AcuI CTGAAG 1 cut(s) 987
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 2 cut(s) 128, 143
AfiI CCNNNNNNNGG 2 cut(s) 233, 561
AflII CTTAAG 1 cut(s) 805
AgsI TTSAA 5 cut(s) 191, 429, 581, 824, 994
AjnI CCWGG 3 cut(s) 129, 159, 416
AjuI GAANNNNNNNTTGG 4 cut(s) 171, 203, 647, 679
AluBI AGCT 6 cut(s) 52, 361, 663, 743, 935, 952
AluI AGCT 6 cut(s) 52, 361, 663, 743, 935, 952
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 63, 906
AlwI GGATC 5 cut(s) 151, 290, 379, 454, 642
AoxI GGCC 2 cut(s) 552, 671
ApeKI GCWGC 1 cut(s) 603
ApoI RAATTY 3 cut(s) 695, 826, 995
Asp700I GAANNNNTTC 1 cut(s) 571
Asp718I GGTACC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 2 cut(s) 552, 623
AsuC2I CCSGG 1 cut(s) 720
AsuHPI GGTGA 2 cut(s) 388, 759
AsuNHI GCTAGC 1 cut(s) 739
AvaII GGWCC 1 cut(s) 623
AxyI CCTNAGG 1 cut(s) 507
BaeGI GKGCMC 3 cut(s) 285, 351, 761
BanI GGYRCC 3 cut(s) 141, 236, 756
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 615
BccI CCATC 2 cut(s) 129, 934
BcgI CGANNNNNNTGC 2 cut(s) 856, 890
BciT130I CCWGG 3 cut(s) 131, 161, 418
BcnI CCSGG 1 cut(s) 720
BcoDI GTCTC 2 cut(s) 63, 906
BfaI CTAG 4 cut(s) 150, 269, 740, 953
BfmI CTRYAG 1 cut(s) 601
BfoI RGCGCY 1 cut(s) 240
BfrI CTTAAG 1 cut(s) 805
BisI GCNGC 1 cut(s) 604
BlpI GCTNAGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 605
Bme1390I CCNGG 4 cut(s) 131, 161, 418, 720
Bme18I GGWCC 1 cut(s) 623
BmgT120I GGNCC 2 cut(s) 552, 623
BmiI GGNNCC 5 cut(s) 143, 238, 568, 625, 758
BmrFI CCNGG 4 cut(s) 131, 161, 418, 720
BmsI GCATC 1 cut(s) 969
BmtI GCTAGC 1 cut(s) 743
BpmI CTGGAG 1 cut(s) 937
Bpu1102I GCTNAGC 1 cut(s) 53
BpuEI CTTGAG 2 cut(s) 233, 751
BpuMI CCSGG 1 cut(s) 720
BsaHI GRCGYC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 63
BsaJI CCNNGG 5 cut(s) 130, 160, 416, 417, 555
BsaXI ACNNNNNCTCC 4 cut(s) 383, 413, 910, 940
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 561
Bse1I ACTGG 1 cut(s) 920
Bse21I CCTNAGG 1 cut(s) 507
BseBI CCWGG 3 cut(s) 131, 161, 418
BseDI CCNNGG 5 cut(s) 130, 160, 416, 417, 555
BseGI GGATG 2 cut(s) 289, 847
BseLI CCNNNNNNNGG 2 cut(s) 233, 561
BseMII CTCAG 4 cut(s) 67, 314, 735, 927
BseNI ACTGG 1 cut(s) 920
BseRI GAGGAG 3 cut(s) 213, 402, 748
BseSI GKGCMC 3 cut(s) 285, 351, 761
BseXI GCAGC 1 cut(s) 615
BsgI GTGCAG 1 cut(s) 896
BshFI GGCC 2 cut(s) 554, 673
BshNI GGYRCC 3 cut(s) 141, 236, 756
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 2 cut(s) 455, 720
BslI CCNNNNNNNGG 2 cut(s) 233, 561
BsmAI GTCTC 2 cut(s) 63, 906
BsnI GGCC 2 cut(s) 554, 673
Bso31I GGTCTC 1 cut(s) 63
Bsp1286I GDGCHC 4 cut(s) 54, 285, 351, 761
Bsp143I GATC 7 cut(s) 112, 156, 295, 364, 384, 446, 634
Bsp1720I GCTNAGC 1 cut(s) 53
BspACI CCGC 3 cut(s) 606, 908, 958
BspANI GGCC 2 cut(s) 554, 673
BspCNI CTCAG 4 cut(s) 66, 313, 736, 928
BspLI GGNNCC 5 cut(s) 143, 238, 568, 625, 758
BspMAI CTGCAG 1 cut(s) 605
BspOI GCTAGC 1 cut(s) 743
BspPI GGATC 5 cut(s) 151, 290, 379, 454, 642
BspT107I GGYRCC 3 cut(s) 141, 236, 756
BspTI CTTAAG 1 cut(s) 805
BspTNI GGTCTC 1 cut(s) 63
BsrI ACTGG 1 cut(s) 920
BssECI CCNNGG 5 cut(s) 130, 160, 416, 417, 555
BssMI GATC 7 cut(s) 112, 156, 295, 364, 384, 446, 634
BssNI GRCGYC 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 3 cut(s) 131, 161, 418
Bst4CI ACNGT 1 cut(s) 682
Bst6I CTCTTC 3 cut(s) 30, 771, 963
BstACI GRCGYC 1 cut(s) 237
BstAFI CTTAAG 1 cut(s) 805
BstC8I GCNNGC 2 cut(s) 478, 741
BstDEI CTNAG 5 cut(s) 53, 300, 507, 744, 936
BstF5I GGATG 2 cut(s) 289, 847
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 7 cut(s) 115, 159, 298, 367, 387, 449, 637
BstMAI GTCTC 2 cut(s) 63, 906
BstMBI GATC 7 cut(s) 112, 156, 295, 364, 384, 446, 634
BstNI CCWGG 3 cut(s) 131, 161, 418
BstSCI CCNGG 4 cut(s) 129, 159, 416, 718
BstSFI CTRYAG 1 cut(s) 601
BstSLI GKGCMC 3 cut(s) 285, 351, 761
BstV1I GCAGC 1 cut(s) 615
BstX2I RGATCY 3 cut(s) 156, 384, 446
BstYI RGATCY 3 cut(s) 156, 384, 446
Bsu36I CCTNAGG 1 cut(s) 507
BsuRI GGCC 2 cut(s) 554, 673
BtsCI GGATG 2 cut(s) 289, 847
BtsIMutI CAGTG 1 cut(s) 963
Cac8I GCNNGC 2 cut(s) 478, 741
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 2 cut(s) 552, 623
Csp6I GTAC 2 cut(s) 127, 142
CspCI CAANNNNNGTGG 2 cut(s) 559, 594
CviAII CATG 2 cut(s) 116, 638
CviQI GTAC 2 cut(s) 127, 142
DdeI CTNAG 5 cut(s) 53, 300, 507, 744, 936
DinI GGCGCC 1 cut(s) 238
DpnI GATC 7 cut(s) 114, 158, 297, 366, 386, 448, 636
DpnII GATC 7 cut(s) 112, 156, 295, 364, 384, 446, 634
Eam1104I CTCTTC 3 cut(s) 30, 771, 963
EarI CTCTTC 3 cut(s) 30, 771, 963
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 555
Eco147I AGGCCT 1 cut(s) 673
Eco24I GRGCYC 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 63
Eco32I GATATC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 623
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 987
Eco81I CCTNAGG 1 cut(s) 507
EcoICRI GAGCTC 1 cut(s) 52
EcoRII CCWGG 3 cut(s) 129, 159, 416
EcoRV GATATC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 555
EcoT38I GRGCYC 1 cut(s) 54
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 2 cut(s) 119, 641
FaiI YATR 5 cut(s) 117, 405, 515, 615, 639
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FatI CATG 2 cut(s) 115, 637
FauI CCCGC 1 cut(s) 901
Fnu4HI GCNGC 1 cut(s) 604
FokI GGATG 2 cut(s) 276, 854
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 604
FspBI CTAG 4 cut(s) 150, 269, 740, 953
GlaI GCGC 1 cut(s) 238
GluI GCNGC 1 cut(s) 604
GsuI CTGGAG 1 cut(s) 937
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 2 cut(s) 554, 673
HapII CCGG 2 cut(s) 455, 720
HhaI GCGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 2 cut(s) 119, 641
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 3 cut(s) 458, 470, 990
HpaII CCGG 2 cut(s) 455, 720
HphI GGTGA 2 cut(s) 388, 759
Hpy166II GTNNAC 2 cut(s) 796, 847
Hpy188I TCNGA 2 cut(s) 112, 303
Hpy188III TCNNGA 3 cut(s) 293, 376, 987
Hpy8I GTNNAC 2 cut(s) 796, 847
HpyAV CCTTC 4 cut(s) 30, 221, 361, 649
HpyCH4III ACNGT 1 cut(s) 682
HpyCH4V TGCA 6 cut(s) 40, 480, 603, 727, 877, 979
HpyF3I CTNAG 5 cut(s) 53, 300, 507, 744, 936
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 2 cut(s) 119, 641
HspAI GCGC 1 cut(s) 237
KasI GGCGCC 1 cut(s) 236
KpnI GGTACC 1 cut(s) 145
Kzo9I GATC 7 cut(s) 112, 156, 295, 364, 384, 446, 634
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 1 cut(s) 615
LweI GCATC 1 cut(s) 969
MaeI CTAG 4 cut(s) 150, 269, 740, 953
MaeIII GTNAC 1 cut(s) 3
MalI GATC 7 cut(s) 114, 158, 297, 366, 386, 448, 636
MboI GATC 7 cut(s) 112, 156, 295, 364, 384, 446, 634
MboII GAAGA 6 cut(s) 17, 593, 679, 785, 788, 980
MflI RGATCY 3 cut(s) 156, 384, 446
MhlI GDGCHC 4 cut(s) 54, 285, 351, 761
MluCI AATT 7 cut(s) 255, 545, 695, 826, 835, 922, 995
Mly113I GGCGCC 1 cut(s) 237
MlyI GAGTC 1 cut(s) 464
MroXI GAANNNNTTC 1 cut(s) 571
MseI TTAA 1 cut(s) 806
MspA1I CMGCKG 2 cut(s) 606, 935
MspCI CTTAAG 1 cut(s) 805
MspI CCGG 2 cut(s) 455, 720
MspR9I CCNGG 4 cut(s) 131, 161, 418, 720
MvaI CCWGG 3 cut(s) 131, 161, 418
NarI GGCGCC 1 cut(s) 237
NciI CCSGG 1 cut(s) 720
NdeII GATC 7 cut(s) 112, 156, 295, 364, 384, 446, 634
NheI GCTAGC 1 cut(s) 739
NlaIII CATG 2 cut(s) 119, 641
NlaIV GGNNCC 5 cut(s) 143, 238, 568, 625, 758
NmuCI GTSAC 1 cut(s) 3
PasI CCCWGGG 1 cut(s) 417
PceI AGGCCT 1 cut(s) 673
PdmI GAANNNNTTC 1 cut(s) 571
PfeI GAWTC 2 cut(s) 458, 990
PkrI GCNGC 1 cut(s) 605
PleI GAGTC 1 cut(s) 464
PluTI GGCGCC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 464
Psp124BI GAGCTC 1 cut(s) 54
Psp6I CCWGG 3 cut(s) 129, 159, 416
PspGI CCWGG 3 cut(s) 129, 159, 416
PspN4I GGNNCC 5 cut(s) 143, 238, 568, 625, 758
PspPI GGNCC 2 cut(s) 552, 623
PstI CTGCAG 1 cut(s) 605
PsuI RGATCY 3 cut(s) 156, 384, 446
PvuII CAGCTG 1 cut(s) 935
RsaI GTAC 2 cut(s) 128, 143
RsaNI GTAC 2 cut(s) 127, 142
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 806
SatI GCNGC 1 cut(s) 604
Sau3AI GATC 7 cut(s) 112, 156, 295, 364, 384, 446, 634
Sau96I GGNCC 2 cut(s) 552, 623
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 4 cut(s) 131, 161, 418, 720
SduI GDGCHC 4 cut(s) 54, 285, 351, 761
SfaNI GCATC 1 cut(s) 969
SfcI CTRYAG 1 cut(s) 601
SfoI GGCGCC 1 cut(s) 238
SinI GGWCC 1 cut(s) 623
SmlI CTYRAG 3 cut(s) 248, 730, 805
SmoI CTYRAG 3 cut(s) 248, 730, 805
Sse9I AATT 7 cut(s) 255, 545, 695, 826, 835, 922, 995
SseBI AGGCCT 1 cut(s) 673
SsiI CCGC 3 cut(s) 606, 908, 958
SspDI GGCGCC 1 cut(s) 236
SspMI CTAG 4 cut(s) 150, 269, 740, 953
SstI GAGCTC 1 cut(s) 54
StuI AGGCCT 1 cut(s) 673
StyD4I CCNGG 4 cut(s) 129, 159, 416, 718
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 1 cut(s) 682
TaqI TCGA 1 cut(s) 866
TasI AATT 7 cut(s) 255, 545, 695, 826, 835, 922, 995
TfiI GAWTC 2 cut(s) 458, 990
Tru1I TTAA 1 cut(s) 806
Tru9I TTAA 1 cut(s) 806
TscAI CASTG 1 cut(s) 970
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 603
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 679, 722
TspRI CASTG 1 cut(s) 970
Vha464I CTTAAG 1 cut(s) 805
VpaK11BI GGWCC 1 cut(s) 623
XapI RAATTY 3 cut(s) 695, 826, 995
XmnI GAANNNNTTC 1 cut(s) 571
XspI CTAG 4 cut(s) 150, 269, 740, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.