Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001120

Physical Location & Seq

Genomic Coordinates Forward (+)

29511433 .. 29513868

Gene Structure 2436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g29333.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAATGGGTATGGACCCTTCTGGGATCATGTACTGGGCTATTGGAAGGAGAGCTTGGAAAGGCCTGAAACAGTGTTCTTCGTCAAATATGAGGAAATGAAAGAGAAACCTGGTCTGCACTTGAGGAGGCTAGCTGAGTTCTTGGGGTGCCCATTTTCTCCGGAAGAAGAAGCACAGGGAGTGGTGGACAATGTCTTGAAGCTGTGTAGTTTTGAGACTTTGAGCAATTTGGATGTGAACAAAAACGGGAGATTATCGACGGGGGTGGAGAATAGTGTATACTTTAGGCAAGGGAAGGCTGGAGACTGGAAGAATTATTTGACAGCTGAGATGGTTGAACAGCTAGACCGTATCACTGAAGAAAAGTTGCAAGGTTCTGGATTGAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

131

Amino Acids

14.99

Weight (kDa)

5.12

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	71 - 334	5.9e-77	Sulfotransferase domain
Sulfotransfer_3	PF13469	165 - 260	2.1e-06	Sulfotransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28170 AT2G03760 AT2G27570 AT3G45070 AT3G45070 AT3G45070 AT3G45080 AT5G43690
fragaria_vesca	FvH4_4g29330 FvH4_4g29331 FvH4_4g29332 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29333 FvH4_4g29751
malus_domestica	MD16G1055600.v1.1 MD16G1055700.v1.1 MD16G1055800.v1.1 MD16G1056100.v1.1
prunus_persica	Prupe.1G293200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437381 RchiOBHm_Chr4g0437391 RchiOBHm_Chr7g0233341
rosa_laevigata	RLG00000006442 RLG00000013880
rosa_multiflora	Rmu_sc0004759.1_g000009 Rmu_sc0004759.1_g000010 Rmu_sc0010228.1_g000003 Rmu_sc0010228.1_g000005
rosa_roxburghii	Rroxscaffold_3G00227360 Rroxscaffold_5G00378530 Rroxscaffold_5G00378560 Rroxscaffold_5G00378630
rosa_rugosa	Rorug04G0300400 Rorug04G0300500 Rorug04G0300600 Rorug04G0301000
rosa_samantha	Rh4AG355300 Rh4BG365000 Rh4BG365100 Rh4BG365400 Rh4BG365500 Rh4CG379200 Rh4CG379300 Rh4CG379600 Rh4CG379700 Rh4DG359000 Rh4DG359100 Rh4DG359300 Rh5DG503800 Rh7CG455200
rosa_wichuraiana	Rw0G022450 Rw4G031140 Rw4G031170 Rw4G031180 Rw7G035860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	160
AclWI	GGATC	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	1 cut(s)	33
AgsI	TTSAA	3 cut(s)	199, 338, 385
AjnI	CCWGG	1 cut(s)	109
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AluBI	AGCT	5 cut(s)	54, 134, 202, 326, 343
AluI	AGCT	5 cut(s)	54, 134, 202, 326, 343
Alw26I	GTCTC	2 cut(s)	209, 297
AlwI	GGATC	1 cut(s)	33
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	14
AsuNHI	GCTAGC	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	147
BarI	GAAGNNNNNNTAC	1 cut(s)	34
BccI	CCATC	1 cut(s)	325
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	209, 297
BfaI	CTAG	2 cut(s)	131, 344
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	16, 149
BmrFI	CCNGG	1 cut(s)	111
BmrI	ACTGGG	1 cut(s)	44
BmtI	GCTAGC	1 cut(s)	134
BmuI	ACTGGG	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	142
BsaWI	WCCGGW	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	39, 311
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	126, 318
BseNI	ACTGG	2 cut(s)	39, 311
BseRI	GAGGAG	1 cut(s)	139
BseSI	GKGCMC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	161
BsmAI	GTCTC	2 cut(s)	209, 297
BsnI	GGCC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	2 cut(s)	127, 319
BspEI	TCCGGA	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	16, 149
BspOI	GCTAGC	1 cut(s)	134
BspPI	GGATC	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	147
BsrI	ACTGG	2 cut(s)	39, 311
BssMI	GATC	1 cut(s)	25
BssNAI	GTATAC	1 cut(s)	280
Bst1107I	GTATAC	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	73, 350
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	135, 327
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	2 cut(s)	209, 297
BstMBI	GATC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	152
BstZ17I	GTATAC	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	78, 354
Cac8I	GCNNGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	14
CsiI	ACCWGGT	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	9 cut(s)	39, 54, 64, 130, 134, 202, 299, 326, 343
CviKI_1	RGCY	9 cut(s)	39, 54, 64, 130, 134, 202, 299, 326, 343
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	2 cut(s)	135, 327
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eco147I	AGGCCT	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	109
FaeI	CATG	1 cut(s)	32
FaiI	YATR	4 cut(s)	12, 30, 90, 280
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	279
FokI	GGATG	1 cut(s)	245
FspBI	CTAG	2 cut(s)	131, 344
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	1 cut(s)	32
HpaII	CCGG	1 cut(s)	161
Hpy166II	GTNNAC	3 cut(s)	187, 238, 280
Hpy188I	TCNGA	1 cut(s)	392
Hpy188III	TCNNGA	3 cut(s)	161, 196, 378
Hpy8I	GTNNAC	3 cut(s)	187, 238, 280
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	3 cut(s)	28, 40, 289
HpyCH4III	ACNGT	2 cut(s)	73, 350
HpyCH4V	TGCA	2 cut(s)	118, 370
HpyF3I	CTNAG	2 cut(s)	135, 327
Hsp92II	CATG	1 cut(s)	32
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	25
MabI	ACCWGGT	1 cut(s)	109
MaeI	CTAG	2 cut(s)	131, 344
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	5 cut(s)	70, 176, 179, 322, 371
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	3 cut(s)	226, 313, 386
MnlI	CCTC	3 cut(s)	85, 117, 120
MroI	TCCGGA	1 cut(s)	160
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
NdeII	GATC	1 cut(s)	25
NheI	GCTAGC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	2 cut(s)	16, 149
PceI	AGGCCT	1 cut(s)	64
PflFI	GACNNNGTC	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	2 cut(s)	16, 149
PspPI	GGNCC	1 cut(s)	14
PsyI	GACNNNGTC	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	7 cut(s)	56, 112, 136, 204, 328, 345, 376
SexAI	ACCWGGT	1 cut(s)	109
SinI	GGWCC	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	3 cut(s)	226, 313, 386
SseBI	AGGCCT	1 cut(s)	64
SspMI	CTAG	2 cut(s)	131, 344
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	73, 350
TaqI	TCGA	1 cut(s)	257
TasI	AATT	3 cut(s)	226, 313, 386
TatI	WGTACW	1 cut(s)	31
TscAI	CASTG	2 cut(s)	78, 361
TspDTI	ATGAA	2 cut(s)	17, 113
TspRI	CASTG	2 cut(s)	78, 361
Tth111I	GACNNNGTC	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	2 cut(s)	131, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.