AT1G33790

Jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000646
Physical Location & Seq
Forward (+)
12256474 .. 12260638
4165 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G33790.5

Sequence Viewer

Length: 1338 bp
ATGGCCCAGAAGTTGGAAGCAAAAGGCGGGAAAGGAGGCAATCAGTGGGATGATTTACTTGACCATGACAATATCGCAAAGATTCATGTACAAGGTGGTCATGAAGGGATTCAGTACGTCAAGTTTGATTATGTTAAGTTTGATAATCTCAAGATTGGTCAACCCAAACTTGGATCAATCCATGGTCTCTCGCGTAAAGGATTCACGCAAACGTTTGAGATTGATCCAACCAATGAACATCTTGTATCCGTTGAGGGTTACTATGATGAATCTAAGGGTTTGGTTCAAGGGCTTAAATTCAAAACCAACAAGAAGACTTCTGACATGATAGGATACGATGAAAATGGTTTGAAGTTTTCACTTGAAGTTAACGGAAAAAAGATAATTGGCTTCCATGGATATGCTCAGACTTATCTAAACTCTCTTGGAGCTTATTTCGTAACGGCTCCTCCTACTAAATTTGACTACCAAGGTGGTTCAGGAGCCCAACTTTGGGATGACGGTACTAACTACAATGGTGTGAGAAAGATTTCCTTTGCGTTAGATGCCAATGAGATAAGGCAAATCAGGATTGATTATGACAAAGGTGGCTTAATTGAAAGACGAGAGTACGGGGGTAACGTAGGACGACAAGAGGAGTTTGTGGTCGACTATCCAAGTGAATATATCATATATATGGAGGGTACATGCGATATTGTAAGCGATGCTAGTAAAAACCGTGTGAGGTCGCTGATGTTCAAAACGTCAAAAGGGAGAACCTCTCCGATATTTGGAAAGGTTGCTGCTCGTAAATTCGTGTTTGAAAGCAATGGTAGTGCTCTTATCGGGTTTCATGGGCGGGCTGCTGCTGCAGTAGATGCCATCGGAGCTTATTTCTCCCGGTTTATTCTTCCTCCTTCCGCTGAAACACTACAAGCAAAAGGAGGTGAAGGAGGAGATCCATGGAGCGATGGTGTTTTCAACGGTGTGAGGAATATATATGTAGGACAAGGTGAAAATGGTGTCAGTGCCGTCAAGTTTGTGTATGATAAAGACTCTCAGGTGGCTGAAGGGAATGATCATGGGAAACCAACACTTCTTGGATACGAGGAGTTCAAGCTTGAATATCCGAGTGAATACATCACCACGGTGGAAGGTTGTTTTGACAAAATATTTGGAAGTGGAGGCGGCGTTATAACCATGCTTAAGTTCAAGACCAACAAACGAACCTCTCCGCCGTTTGGACTCGAAACAACATCAAACTTTGTTCTCGGGAAGGAAGGTTACAAAATTGTAGGGTTCCACGGAACATCTAGTCATGAGCTTCATCAGCTCGGGGTATATGTCATGCCCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin TIR

Protein Analysis

445

Amino Acids

48.98

Weight (kDa)

6.44

Isoelectric Point (pI)

24.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 6 - 145 3.5e-34 Jacalin-like lectin domain
Jacalin PF01419 156 - 291 2.8e-30 Jacalin-like lectin domain
Jacalin PF01419 305 - 441 9.7e-41 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1175
AccB7I CCANNNNNTGG 1 cut(s) 13
AccI GTMKAC 1 cut(s) 648
AccII CGCG 1 cut(s) 193
AciI CCGC 5 cut(s) 27, 838, 900, 1167, 1214
AclI AACGTT 1 cut(s) 212
AclWI GGATC 3 cut(s) 181, 218, 932
AcsI RAATTY 3 cut(s) 296, 458, 791
AcuI CTGAAG 1 cut(s) 1068
AfaI GTAC 5 cut(s) 90, 116, 505, 611, 685
AfiI CCNNNNNNNGG 6 cut(s) 13, 170, 492, 493, 770, 1220
AflII CTTAAG 1 cut(s) 1184
AleI CACNNNNGTG 1 cut(s) 1127
AluBI AGCT 5 cut(s) 431, 869, 1099, 1303, 1312
AluI AGCT 5 cut(s) 431, 869, 1099, 1303, 1312
Alw21I GWGCWC 1 cut(s) 820
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 3 cut(s) 181, 218, 932
Ama87I CYCGRG 2 cut(s) 1250, 1313
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 782, 842, 845, 848
ApoI RAATTY 3 cut(s) 296, 458, 791
ArsI GACNNNNNNTTYG 2 cut(s) 1136, 1168
Asp700I GAANNNNTTC 2 cut(s) 108, 529
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 880
AsuHPI GGTGA 3 cut(s) 938, 1004, 1114
AvaI CYCGRG 2 cut(s) 1250, 1313
BanII GRGCYC 1 cut(s) 487
BarI GAAGNNNNNNTAC 2 cut(s) 1247, 1279
BbsI GAAGAC 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 820
BbvI GCAGC 4 cut(s) 769, 829, 832, 835
BccI CCATC 2 cut(s) 869, 944
BceAI ACGGC 3 cut(s) 459, 995, 1201
BciVI GTATCC 3 cut(s) 256, 326, 1076
BclI TGATCA 1 cut(s) 1057
BcnI CCSGG 1 cut(s) 880
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 3 cut(s) 708, 1293, 1336
BfmI CTRYAG 1 cut(s) 849
BfrI CTTAAG 1 cut(s) 1184
BfuI GTATCC 3 cut(s) 256, 326, 1076
BisI GCNGC 5 cut(s) 783, 843, 846, 849, 1168
BlsI GCNGC 5 cut(s) 784, 844, 847, 850, 1169
Bme1390I CCNGG 1 cut(s) 880
BmeT110I CYCGRG 2 cut(s) 1250, 1313
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 447, 484, 1280
BmrFI CCNGG 1 cut(s) 880
BmsI GCATC 3 cut(s) 535, 694, 847
BpiI GAAGAC 1 cut(s) 320
BplI GAGNNNNNCTC 2 cut(s) 745, 777
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 880
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 6 cut(s) 181, 394, 469, 941, 1125, 1282
BsaXI ACNNNNNCTCC 6 cut(s) 433, 463, 937, 967, 1155, 1185
Bsc4I CCNNNNNNNGG 6 cut(s) 13, 170, 492, 493, 770, 1220
Bse3DI GCAATG 1 cut(s) 814
BseDI CCNNGG 6 cut(s) 181, 394, 469, 941, 1125, 1282
BseGI GGATG 2 cut(s) 55, 502
BseLI CCNNNNNNNGG 6 cut(s) 13, 170, 492, 493, 770, 1220
BseMI GCAATG 1 cut(s) 814
BseMII CTCAG 2 cut(s) 419, 1052
BseRI GAGGAG 4 cut(s) 438, 650, 948, 1103
BseXI GCAGC 4 cut(s) 769, 829, 832, 835
Bsh1236I CGCG 1 cut(s) 193
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 820
BsiHKCI CYCGRG 2 cut(s) 1250, 1313
BsiSI CCGG 1 cut(s) 880
BslI CCNNNNNNNGG 6 cut(s) 13, 170, 492, 493, 770, 1220
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 191
BsoBI CYCGRG 2 cut(s) 1250, 1313
Bsp1286I GDGCHC 2 cut(s) 487, 820
Bsp1407I TGTACA 1 cut(s) 88
Bsp143I GATC 4 cut(s) 173, 223, 937, 1057
Bsp19I CCATGG 3 cut(s) 181, 394, 941
BspACI CCGC 5 cut(s) 27, 838, 900, 1167, 1214
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 418, 1051
BspFNI CGCG 1 cut(s) 193
BspHI TCATGA 2 cut(s) 100, 1297
BspLI GGNNCC 3 cut(s) 447, 484, 1280
BspMAI CTGCAG 1 cut(s) 853
BspPI GGATC 3 cut(s) 181, 218, 932
BspTI CTTAAG 1 cut(s) 1184
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 814
BsrGI TGTACA 1 cut(s) 88
BssECI CCNNGG 6 cut(s) 181, 394, 469, 941, 1125, 1282
BssMI GATC 4 cut(s) 173, 223, 937, 1057
BssT1I CCWWGG 4 cut(s) 181, 394, 469, 941
Bst4CI ACNGT 4 cut(s) 503, 719, 965, 1129
BstAFI CTTAAG 1 cut(s) 1184
BstAPI GCANNNNNTGC 1 cut(s) 857
BstAUI TGTACA 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 840
BstDEI CTNAG 3 cut(s) 273, 405, 1038
BstDSI CCRYGG 5 cut(s) 181, 394, 941, 1125, 1282
BstF5I GGATG 2 cut(s) 55, 502
BstFNI CGCG 1 cut(s) 193
BstKTI GATC 4 cut(s) 176, 226, 940, 1060
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 4 cut(s) 173, 223, 937, 1057
BstMWI GCNNNNNNNGC 5 cut(s) 545, 848, 857, 866, 1309
BstNSI RCATGY 1 cut(s) 690
BstSCI CCNGG 1 cut(s) 878
BstSFI CTRYAG 1 cut(s) 849
BstUI CGCG 1 cut(s) 193
BstV1I GCAGC 4 cut(s) 769, 829, 832, 835
BstV2I GAAGAC 1 cut(s) 320
BstX2I RGATCY 1 cut(s) 937
BstYI RGATCY 1 cut(s) 937
BsuI GTATCC 3 cut(s) 256, 326, 1076
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 5 cut(s) 181, 394, 941, 1125, 1282
BtgZI GCGATG 2 cut(s) 717, 963
BtsCI GGATG 2 cut(s) 55, 502
BtsIMutI CAGTG 2 cut(s) 50, 1012
Cac8I GCNNGC 1 cut(s) 840
CciI TCATGA 2 cut(s) 100, 1297
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 5 cut(s) 89, 115, 504, 610, 684
CviQI GTAC 5 cut(s) 89, 115, 504, 610, 684
DdeI CTNAG 3 cut(s) 273, 405, 1038
DpnI GATC 4 cut(s) 175, 225, 939, 1059
DpnII GATC 4 cut(s) 173, 223, 937, 1057
EciI GGCGGA 1 cut(s) 1203
Eco130I CCWWGG 4 cut(s) 181, 394, 469, 941
Eco24I GRGCYC 1 cut(s) 487
Eco31I GGTCTC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 1068
Eco88I CYCGRG 2 cut(s) 1250, 1313
EcoT14I CCWWGG 4 cut(s) 181, 394, 469, 941
EcoT38I GRGCYC 1 cut(s) 487
ErhI CCWWGG 4 cut(s) 181, 394, 469, 941
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FauI CCCGC 2 cut(s) 20, 831
FbaI TGATCA 1 cut(s) 1057
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 5 cut(s) 783, 843, 846, 849, 1168
FokI GGATG 2 cut(s) 62, 509
FriOI GRGCYC 1 cut(s) 487
Fsp4HI GCNGC 5 cut(s) 783, 843, 846, 849, 1168
FspBI CTAG 3 cut(s) 708, 1293, 1336
GluI GCNGC 5 cut(s) 783, 843, 846, 849, 1168
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 880
HincII GTYRAC 3 cut(s) 161, 370, 649
HindII GTYRAC 3 cut(s) 161, 370, 649
HindIII AAGCTT 1 cut(s) 1097
HinfI GANTC 6 cut(s) 82, 109, 201, 269, 1034, 1224
HpaI GTTAAC 1 cut(s) 370
HpaII CCGG 1 cut(s) 880
HphI GGTGA 3 cut(s) 938, 1004, 1114
Hpy166II GTNNAC 3 cut(s) 161, 370, 649
Hpy188I TCNGA 5 cut(s) 322, 408, 765, 866, 1110
Hpy188III TCNNGA 7 cut(s) 101, 151, 480, 568, 1192, 1252, 1298
Hpy8I GTNNAC 3 cut(s) 161, 370, 649
HpyAV CCTTC 7 cut(s) 98, 906, 923, 1043, 1127, 1249, 1253
HpyCH4III ACNGT 4 cut(s) 503, 719, 965, 1129
HpyCH4IV ACGT 4 cut(s) 117, 212, 621, 743
HpyCH4V TGCA 1 cut(s) 851
HpyF10VI GCNNNNNNNGC 5 cut(s) 545, 848, 857, 866, 1309
HpyF3I CTNAG 3 cut(s) 273, 405, 1038
HpySE526I ACGT 4 cut(s) 117, 212, 621, 743
Ksp22I TGATCA 1 cut(s) 1057
KspAI GTTAAC 1 cut(s) 370
Kzo9I GATC 4 cut(s) 173, 223, 937, 1057
LmnI GCTCC 5 cut(s) 428, 451, 482, 866, 945
LpnPI CCDG 5 cut(s) 20, 465, 553, 893, 1025
Lsp1109I GCAGC 4 cut(s) 769, 829, 832, 835
LweI GCATC 3 cut(s) 535, 694, 847
MaeI CTAG 3 cut(s) 708, 1293, 1336
MaeII ACGT 4 cut(s) 117, 212, 621, 743
MaeIII GTNAC 4 cut(s) 257, 439, 617, 1262
MalI GATC 4 cut(s) 175, 225, 939, 1059
MboI GATC 4 cut(s) 173, 223, 937, 1057
MboII GAAGA 2 cut(s) 325, 881
MflI RGATCY 1 cut(s) 937
MhlI GDGCHC 2 cut(s) 487, 820
MluCI AATT 6 cut(s) 296, 384, 458, 594, 791, 1269
MlyI GAGTC 2 cut(s) 1028, 1218
MmeI TCCRAC 1 cut(s) 251
MroXI GAANNNNTTC 2 cut(s) 108, 529
MseI TTAA 5 cut(s) 135, 294, 369, 593, 1185
MslI CAYNNNNRTG 3 cut(s) 399, 674, 1127
MspA1I CMGCKG 1 cut(s) 902
MspCI CTTAAG 1 cut(s) 1184
MspI CCGG 1 cut(s) 880
MspR9I CCNGG 1 cut(s) 880
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 5 cut(s) 545, 848, 857, 866, 1309
NciI CCSGG 1 cut(s) 880
NcoI CCATGG 3 cut(s) 181, 394, 941
NdeII GATC 4 cut(s) 173, 223, 937, 1057
NlaIV GGNNCC 3 cut(s) 447, 484, 1280
NspI RCATGY 1 cut(s) 690
OliI CACNNNNGTG 1 cut(s) 1127
PagI TCATGA 2 cut(s) 100, 1297
PcsI WCGNNNNNNNCGW 1 cut(s) 618
PdmI GAANNNNTTC 2 cut(s) 108, 529
PfeI GAWTC 4 cut(s) 82, 109, 201, 269
PflMI CCANNNNNTGG 1 cut(s) 13
PkrI GCNGC 5 cut(s) 784, 844, 847, 850, 1169
PleI GAGTC 2 cut(s) 1028, 1218
PpsI GAGTC 2 cut(s) 1028, 1218
PsiI TTATAA 1 cut(s) 1175
Psp1406I AACGTT 1 cut(s) 212
PspN4I GGNNCC 3 cut(s) 447, 484, 1280
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 853
PsuI RGATCY 1 cut(s) 937
RsaI GTAC 5 cut(s) 90, 116, 505, 611, 685
RsaNI GTAC 5 cut(s) 89, 115, 504, 610, 684
RseI CAYNNNNRTG 3 cut(s) 399, 674, 1127
SalI GTCGAC 1 cut(s) 647
SaqAI TTAA 5 cut(s) 135, 294, 369, 593, 1185
SatI GCNGC 5 cut(s) 783, 843, 846, 849, 1168
Sau3AI GATC 4 cut(s) 173, 223, 937, 1057
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 1028, 1218
ScrFI CCNGG 1 cut(s) 880
SduI GDGCHC 2 cut(s) 487, 820
SfaNI GCATC 3 cut(s) 535, 694, 847
SfcI CTRYAG 1 cut(s) 849
SmiMI CAYNNNNRTG 3 cut(s) 399, 674, 1127
SmlI CTYRAG 2 cut(s) 149, 1184
SmoI CTYRAG 2 cut(s) 149, 1184
Sse9I AATT 6 cut(s) 296, 384, 458, 594, 791, 1269
SsiI CCGC 5 cut(s) 27, 838, 900, 1167, 1214
SspI AATATT 1 cut(s) 1152
SspMI CTAG 3 cut(s) 708, 1293, 1336
StyD4I CCNGG 1 cut(s) 878
StyI CCWWGG 4 cut(s) 181, 394, 469, 941
TaaI ACNGT 4 cut(s) 503, 719, 965, 1129
TaiI ACGT 4 cut(s) 120, 215, 624, 746
TaqI TCGA 2 cut(s) 648, 1227
TasI AATT 6 cut(s) 296, 384, 458, 594, 791, 1269
TatI WGTACW 1 cut(s) 88
TauI GCSGC 1 cut(s) 1170
TfiI GAWTC 4 cut(s) 82, 109, 201, 269
Tru1I TTAA 5 cut(s) 135, 294, 369, 593, 1185
Tru9I TTAA 5 cut(s) 135, 294, 369, 593, 1185
TscAI CASTG 2 cut(s) 50, 1012
TseI GCWGC 4 cut(s) 782, 842, 845, 848
TspDTI ATGAA 7 cut(s) 74, 117, 249, 282, 354, 821, 1295
TspGWI ACGGA 3 cut(s) 238, 387, 1299
TspRI CASTG 2 cut(s) 50, 1012
Van91I CCANNNNNTGG 1 cut(s) 13
Vha464I CTTAAG 1 cut(s) 1184
XapI RAATTY 3 cut(s) 296, 458, 791
XceI RCATGY 1 cut(s) 690
XmiI GTMKAC 1 cut(s) 648
XmnI GAANNNNTTC 2 cut(s) 108, 529
XspI CTAG 3 cut(s) 708, 1293, 1336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.