AT5G46000

jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000646
Physical Location & Seq
Reverse (-)
18654196 .. 18656376
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G46000.1

Sequence Viewer

Length: 1191 bp
ATGTCAAAGAAAGTGACCATAGCTTACGGTGGTTCCAATGGAAACAAATTTGATGATGGTGTTTACGAGGGTACTTACGACGGTGTGCGTAAATTGATAGTTGGAGAAGACTTTCATGGCATCGTTTACCTCAAGATCCAGTACGTGAAAAACGGTGATGTCGTTGTTAAAGAACACGGAAGAGCAAGAGGAACACATATTACAGAGACCGAGTTTGAAGTGAAGTGCCCAGACGAATACATTACGTCTATTTGGGGAACATGCAGAAACGATCATCACAGATACAAATCTACCGGCGGGAGAACATTTGAACAGCTCACTGCTGCAGACAAATACGACATAAATCTTGCTGCAAAAATGGGAACTCCAATGTATTGGAACACGGTGTCGGAGCTTCAATTCAAAACATCACACGGGAGAACATCTGAGCAGTTTCGTATGCCCGGTACTGGAGGATCCAACGGGGTCTCTTGGGATGATGGGGCTTATGATCGTCTGAGTAAATTGTGTGTTGGAGAAGATGCTCATTGTGTGAGCTCCGTTGAGTTCCACTATGTTAAGGGAAACGACCGGATAACTCATTGTCACGGAAAGGATTCGAAAGAACACGACAAAGATGGATTCATCTCGTCTTTAACTTTCAAAACATCAATGAATAGAAGTTCTGAGAAATTTGGGAAACCGGTTGGTACAAAATTCCAACTTGAGGCAAAAGGGTTCGATAAGATTGTGGGGTTCCGAGGAAGGTCGTCCGTAAATCGTATCAATGCACTCGGAGCAAATTTTGCGGTGGTGGTAGTTCCTCCGGTCAAGAAACTAAATGCAAAAGGTGGTGTCCTTGGGAACGAGTGGGATGATGGGATTCACGACGATGCTCGAATGATAACATTCAAGCTCTATTTTAACAAGGAATACATCACATCCGTTGAAGGACACTATGGTAAGAGGTTAGCAGCACCTAATGCATCCGCATCTGCCATGTCTTCATTTTTTACCGGTTATATGACGATGCTTAAGTTCAATACAAACCGTACAACATATCAAGTGTTAAGTCACAGTCCAGAATACACTTACGAGGGAACATCATTCAAGCTTGAGGAGAAAGATCACAAGATTGTTGGGTTTTATGGGAAGACTGAAGTTTCTCTCAACCAAATTGGGGTTTATGTCAAGCCAATCGCTAACGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

396

Amino Acids

44.17

Weight (kDa)

8.78

Isoelectric Point (pI)

21.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 8 - 90 1.4e-12 Jacalin-like lectin domain
Jacalin PF01419 192 - 260 3.5e-11 Jacalin-like lectin domain
Jacalin PF01419 293 - 389 1.6e-13 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 297, 788, 969
AclWI GGATC 3 cut(s) 130, 450, 463
AcsI RAATTY 4 cut(s) 47, 671, 695, 781
AcuI CTGAAG 1 cut(s) 1158
AfaI GTAC 5 cut(s) 73, 143, 448, 691, 1033
AfiI CCNNNNNNNGG 3 cut(s) 449, 706, 1159
AflII CTTAAG 1 cut(s) 1013
AgeI ACCGGT 2 cut(s) 682, 995
AgsI TTSAA 9 cut(s) 218, 311, 398, 403, 643, 892, 929, 1021, 1090
AluBI AGCT 6 cut(s) 23, 316, 394, 537, 895, 1093
AluI AGCT 6 cut(s) 23, 316, 394, 537, 895, 1093
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 2 cut(s) 200, 472
AlwI GGATC 3 cut(s) 130, 450, 463
ApeKI GCWGC 3 cut(s) 323, 350, 953
ApoI RAATTY 4 cut(s) 47, 671, 695, 781
AsiGI ACCGGT 2 cut(s) 682, 995
Asp700I GAANNNNTTC 2 cut(s) 111, 595
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 1 cut(s) 167
AsuII TTCGAA 1 cut(s) 599
BaeGI GKGCMC 1 cut(s) 230
BamHI GGATCC 1 cut(s) 455
BanII GRGCYC 1 cut(s) 539
BbsI GAAGAC 3 cut(s) 114, 975, 1139
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 3 cut(s) 310, 337, 965
BccI CCATC 4 cut(s) 50, 473, 611, 851
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 2 cut(s) 200, 472
BfmI CTRYAG 1 cut(s) 324
BfrI CTTAAG 1 cut(s) 1013
BisI GCNGC 3 cut(s) 324, 351, 954
BlsI GCNGC 3 cut(s) 325, 352, 955
Bme1390I CCNGG 1 cut(s) 444
BmiI GGNNCC 3 cut(s) 34, 457, 737
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 6 cut(s) 129, 511, 862, 974, 980, 999
BpiI GAAGAC 3 cut(s) 114, 975, 1139
BpmI CTGGAG 1 cut(s) 471
Bpu14I TTCGAA 1 cut(s) 599
BpuEI CTTGAG 3 cut(s) 116, 725, 1115
BpuMI CCSGG 1 cut(s) 444
BsaAI YACGTR 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 286
BsaI GGTCTC 2 cut(s) 200, 472
BsaJI CCNNGG 2 cut(s) 739, 838
BsaWI WCCGGW 4 cut(s) 570, 682, 805, 995
Bsc4I CCNNNNNNNGG 3 cut(s) 449, 706, 1159
Bse118I RCCGGY 3 cut(s) 293, 682, 995
Bse1I ACTGG 2 cut(s) 139, 454
Bse8I GATNNNNATC 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 739, 838
BseGI GGATG 4 cut(s) 481, 859, 920, 965
BseJI GATNNNNATC 1 cut(s) 286
BseLI CCNNNNNNNGG 3 cut(s) 449, 706, 1159
BseMII CTCAG 3 cut(s) 417, 488, 657
BseNI ACTGG 2 cut(s) 139, 454
BseRI GAGGAG 1 cut(s) 1112
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 3 cut(s) 310, 337, 965
Bsh1285I CGRYCG 1 cut(s) 571
BshTI ACCGGT 2 cut(s) 682, 995
BsiEI CGRYCG 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 539
BsiSI CCGG 6 cut(s) 294, 444, 571, 683, 806, 996
BslI CCNNNNNNNGG 3 cut(s) 449, 706, 1159
BsmAI GTCTC 2 cut(s) 200, 472
Bso31I GGTCTC 2 cut(s) 200, 472
Bsp119I TTCGAA 1 cut(s) 599
Bsp1286I GDGCHC 2 cut(s) 230, 539
Bsp143I GATC 5 cut(s) 135, 271, 455, 490, 1105
BspACI CCGC 3 cut(s) 297, 788, 969
BspCNI CTCAG 3 cut(s) 418, 489, 658
BspLI GGNNCC 3 cut(s) 34, 457, 737
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 3 cut(s) 130, 450, 463
BspQI GCTCTTC 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 599
BspTI CTTAAG 1 cut(s) 1013
BspTNI GGTCTC 2 cut(s) 200, 472
BsrFI RCCGGY 3 cut(s) 293, 682, 995
BsrI ACTGG 2 cut(s) 139, 454
BssAI RCCGGY 3 cut(s) 293, 682, 995
BssECI CCNNGG 2 cut(s) 739, 838
BssMI GATC 5 cut(s) 135, 271, 455, 490, 1105
BssT1I CCWWGG 1 cut(s) 838
Bst4CI ACNGT 6 cut(s) 29, 83, 155, 385, 1031, 1058
Bst6I CTCTTC 1 cut(s) 175
BstAFI CTTAAG 1 cut(s) 1013
BstAPI GCANNNNNTGC 2 cut(s) 785, 962
BstBAI YACGTR 1 cut(s) 145
BstBI TTCGAA 1 cut(s) 599
BstDEI CTNAG 3 cut(s) 426, 497, 666
BstF5I GGATG 4 cut(s) 481, 859, 920, 965
BstKTI GATC 5 cut(s) 138, 274, 458, 493, 1108
BstMAI GTCTC 2 cut(s) 200, 472
BstMBI GATC 5 cut(s) 135, 271, 455, 490, 1105
BstMCI CGRYCG 1 cut(s) 571
BstMWI GCNNNNNNNGC 3 cut(s) 776, 785, 962
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 230
BstV1I GCAGC 3 cut(s) 310, 337, 965
BstV2I GAAGAC 3 cut(s) 114, 975, 1139
BstX2I RGATCY 2 cut(s) 135, 455
BstXI CCANNNNNNTGG 1 cut(s) 375
BstYI RGATCY 2 cut(s) 135, 455
BtsCI GGATG 4 cut(s) 481, 859, 920, 965
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
Cfr10I RCCGGY 3 cut(s) 293, 682, 995
Csp6I GTAC 5 cut(s) 72, 142, 447, 690, 1032
CspAI ACCGGT 2 cut(s) 682, 995
CviAII CATG 3 cut(s) 116, 261, 979
CviJI RGCY 8 cut(s) 23, 316, 394, 485, 537, 895, 1093, 1174
CviKI_1 RGCY 8 cut(s) 23, 316, 394, 485, 537, 895, 1093, 1174
CviQI GTAC 5 cut(s) 72, 142, 447, 690, 1032
DdeI CTNAG 3 cut(s) 426, 497, 666
DpnI GATC 5 cut(s) 137, 273, 457, 492, 1107
DpnII GATC 5 cut(s) 135, 271, 455, 490, 1105
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
Ecl136II GAGCTC 1 cut(s) 537
Eco130I CCWWGG 1 cut(s) 838
Eco24I GRGCYC 1 cut(s) 539
Eco31I GGTCTC 2 cut(s) 200, 472
Eco53kI GAGCTC 1 cut(s) 537
Eco57I CTGAAG 1 cut(s) 1158
EcoICRI GAGCTC 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 838
EcoT22I ATGCAT 1 cut(s) 967
EcoT38I GRGCYC 1 cut(s) 539
ErhI CCWWGG 1 cut(s) 838
FaeI CATG 3 cut(s) 119, 264, 982
FatI CATG 3 cut(s) 115, 260, 978
FauI CCCGC 1 cut(s) 290
Fnu4HI GCNGC 3 cut(s) 324, 351, 954
FokI GGATG 4 cut(s) 488, 866, 907, 952
FriOI GRGCYC 1 cut(s) 539
Fsp4HI GCNGC 3 cut(s) 324, 351, 954
GluI GCNGC 3 cut(s) 324, 351, 954
GsuI CTGGAG 1 cut(s) 471
HapII CCGG 6 cut(s) 294, 444, 571, 683, 806, 996
Hin1II CATG 3 cut(s) 119, 264, 982
HindIII AAGCTT 1 cut(s) 1091
HinfI GANTC 3 cut(s) 596, 621, 862
HpaII CCGG 6 cut(s) 294, 444, 571, 683, 806, 996
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 64, 127
Hpy188I TCNGA 6 cut(s) 391, 427, 498, 667, 740, 776
Hpy188III TCNNGA 4 cut(s) 133, 811, 866, 1061
Hpy8I GTNNAC 2 cut(s) 64, 127
Hpy99I CGWCG 2 cut(s) 83, 872
HpyAV CCTTC 2 cut(s) 738, 923
HpyCH4III ACNGT 6 cut(s) 29, 83, 155, 385, 1031, 1058
HpyCH4IV ACGT 2 cut(s) 144, 245
HpyCH4V TGCA 6 cut(s) 264, 326, 353, 770, 824, 965
HpyF10VI GCNNNNNNNGC 3 cut(s) 776, 785, 962
HpyF3I CTNAG 3 cut(s) 426, 497, 666
HpySE526I ACGT 2 cut(s) 144, 245
Hsp92II CATG 3 cut(s) 119, 264, 982
Kzo9I GATC 5 cut(s) 135, 271, 455, 490, 1105
LguI GCTCTTC 1 cut(s) 175
LmnI GCTCC 3 cut(s) 391, 542, 776
Lsp1109I GCAGC 3 cut(s) 310, 337, 965
LweI GCATC 6 cut(s) 129, 511, 862, 974, 980, 999
MaeII ACGT 2 cut(s) 144, 245
MaeIII GTNAC 3 cut(s) 13, 584, 1052
MalI GATC 5 cut(s) 137, 273, 457, 492, 1107
MboI GATC 5 cut(s) 135, 271, 455, 490, 1105
MboII GAAGA 5 cut(s) 119, 192, 530, 975, 1144
MflI RGATCY 2 cut(s) 135, 455
MhlI GDGCHC 2 cut(s) 230, 539
MluCI AATT 8 cut(s) 47, 92, 398, 503, 671, 695, 781, 1155
MmeI TCCRAC 5 cut(s) 82, 369, 483, 493, 724
Mph1103I ATGCAT 1 cut(s) 967
MroXI GAANNNNTTC 2 cut(s) 111, 595
MseI TTAA 7 cut(s) 168, 558, 635, 903, 1014, 1049, 1189
MslI CAYNNNNRTG 1 cut(s) 870
MspCI CTTAAG 1 cut(s) 1013
MspI CCGG 6 cut(s) 294, 444, 571, 683, 806, 996
MspR9I CCNGG 1 cut(s) 444
MwoI GCNNNNNNNGC 3 cut(s) 776, 785, 962
NciI CCSGG 1 cut(s) 444
NdeII GATC 5 cut(s) 135, 271, 455, 490, 1105
NlaIII CATG 3 cut(s) 119, 264, 982
NlaIV GGNNCC 3 cut(s) 34, 457, 737
NmuCI GTSAC 3 cut(s) 13, 584, 1052
NsiI ATGCAT 1 cut(s) 967
NspI RCATGY 1 cut(s) 264
NspV TTCGAA 1 cut(s) 599
PciSI GCTCTTC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PdmI GAANNNNTTC 2 cut(s) 111, 595
PfeI GAWTC 3 cut(s) 596, 621, 862
PinAI ACCGGT 2 cut(s) 682, 995
PkrI GCNGC 3 cut(s) 325, 352, 955
Ppu21I YACGTR 1 cut(s) 145
Psp124BI GAGCTC 1 cut(s) 539
PspN4I GGNNCC 3 cut(s) 34, 457, 737
PsrI GAACNNNNNNTAC 2 cut(s) 184, 216
PstI CTGCAG 1 cut(s) 328
PsuI RGATCY 2 cut(s) 135, 455
RsaI GTAC 5 cut(s) 73, 143, 448, 691, 1033
RsaNI GTAC 5 cut(s) 72, 142, 447, 690, 1032
RseI CAYNNNNRTG 1 cut(s) 870
SacI GAGCTC 1 cut(s) 539
SapI GCTCTTC 1 cut(s) 175
SaqAI TTAA 7 cut(s) 168, 558, 635, 903, 1014, 1049, 1189
SatI GCNGC 3 cut(s) 324, 351, 954
Sau3AI GATC 5 cut(s) 135, 271, 455, 490, 1105
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 2 cut(s) 230, 539
SfaNI GCATC 6 cut(s) 129, 511, 862, 974, 980, 999
SfcI CTRYAG 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 599
SmiMI CAYNNNNRTG 1 cut(s) 870
SmlI CTYRAG 4 cut(s) 131, 704, 1013, 1094
SmoI CTYRAG 4 cut(s) 131, 704, 1013, 1094
Sse9I AATT 8 cut(s) 47, 92, 398, 503, 671, 695, 781, 1155
SsiI CCGC 3 cut(s) 297, 788, 969
SstI GAGCTC 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 838
TaaI ACNGT 6 cut(s) 29, 83, 155, 385, 1031, 1058
TaiI ACGT 2 cut(s) 147, 248
TaqI TCGA 3 cut(s) 599, 720, 877
TaqII GACCGA 1 cut(s) 224
TasI AATT 8 cut(s) 47, 92, 398, 503, 671, 695, 781, 1155
TfiI GAWTC 3 cut(s) 596, 621, 862
Tru1I TTAA 7 cut(s) 168, 558, 635, 903, 1014, 1049, 1189
Tru9I TTAA 7 cut(s) 168, 558, 635, 903, 1014, 1049, 1189
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 3 cut(s) 13, 584, 1052
TseI GCWGC 3 cut(s) 323, 350, 953
Tsp45I GTSAC 3 cut(s) 13, 584, 1052
TspDTI ATGAA 4 cut(s) 104, 613, 668, 975
TspGWI ACGGA 5 cut(s) 192, 529, 603, 742, 913
TspRI CASTG 1 cut(s) 325
Vha464I CTTAAG 1 cut(s) 1013
XapI RAATTY 4 cut(s) 47, 671, 695, 781
XceI RCATGY 1 cut(s) 264
XmnI GAANNNNTTC 2 cut(s) 111, 595
Zsp2I ATGCAT 1 cut(s) 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.