AT5G49860

jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000646
Physical Location & Seq
Reverse (-)
20264567 .. 20265334
768 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G49860.1

Sequence Viewer

Length: 666 bp
ATGGATTCTAACGTGATTACGTCATTAACTTTCAAAACATCAAAAGGGAGAACCTCTCCAAAATTTGGATACGGAACTTCTGATTCAGTTGAATTTGTCCTCGAGAGCAAAGGTTGTGCTATTGTCGGATTTTATGGATGGTATAAGACTGGGTCTGGGTATACTACGGCTCTTGGTGCATATTATTATCCGATGCCTCTACCTCCTTCTTCGGAAAAGCTAGAAGCACAAGGTGGTGCTGGAGGAGCTCCTTGGGATGATGGCAGTAATTTCGAAGGTGTTAGAAAGATATACATTGGGACAGGTGAGATTGGTATCGTTTCCATCAAGTTTTTGTACGAAAATGACATTCATGAGATAATAGTGGGAGATCATCATGGGAACAAGAACCTACTTCGACATGAAGAGTTTGACCTGGACTATCCGAGCGAATACCTCACATCAGTAGAAGGTAGCTATGATGTAGTACCTGGAAGTGAAGAAGATGAAGTTATGATCATGCTCAAGTTCACAACAAACATGCGAACATCTCCGTGTTATGGACTCGATGATGACCCAAGCTTCGTGCTCCACAAGGAAGGTCACAAGATCGTTGGGTTCCATGGAAAATCAAGTACCATGCTTCATAAACTTGGGATCCACGTGCTCCCCATCACCCACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

221

Amino Acids

24.31

Weight (kDa)

5.29

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 4 - 61 7.7e-09 Jacalin-like lectin domain
Jacalin PF01419 75 - 214 4e-37 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 65
AccI GTMKAC 1 cut(s) 161
AclWI GGATC 2 cut(s) 631, 644
AcsI RAATTY 2 cut(s) 62, 92
AcvI CACGTG 1 cut(s) 643
AdeI CACNNNGTG 1 cut(s) 233
AfaI GTAC 3 cut(s) 338, 468, 616
AfiI CCNNNNNNNGG 2 cut(s) 65, 539
AgsI TTSAA 2 cut(s) 34, 92
AjnI CCWGG 2 cut(s) 414, 469
AluBI AGCT 4 cut(s) 220, 248, 456, 561
AluI AGCT 4 cut(s) 220, 248, 456, 561
Alw21I GWGCWC 3 cut(s) 250, 570, 648
AlwI GGATC 2 cut(s) 631, 644
Ama87I CYCGRG 1 cut(s) 101
ApoI RAATTY 2 cut(s) 62, 92
ArsI GACNNNNNNTTYG 2 cut(s) 545, 577
AsuHPI GGTGA 2 cut(s) 317, 646
AsuII TTCGAA 1 cut(s) 273
AvaI CYCGRG 1 cut(s) 101
BamHI GGATCC 1 cut(s) 636
BanII GRGCYC 1 cut(s) 250
BbrPI CACGTG 1 cut(s) 643
Bbv12I GWGCWC 3 cut(s) 250, 570, 648
BccI CCATC 4 cut(s) 132, 254, 332, 659
BceAI ACGGC 1 cut(s) 183
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BciT130I CCWGG 2 cut(s) 416, 471
BciVI GTATCC 1 cut(s) 62
BclI TGATCA 1 cut(s) 495
BfaI CTAG 1 cut(s) 221
BfuI GTATCC 1 cut(s) 62
Bme1390I CCNGG 2 cut(s) 416, 471
BmeT110I CYCGRG 1 cut(s) 101
BmiI GGNNCC 2 cut(s) 599, 638
BmrFI CCNGG 2 cut(s) 416, 471
BmrI ACTGGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 159
BplI GAGNNNNNCTC 2 cut(s) 40, 72
BpmI CTGGAG 1 cut(s) 261
Bpu14I TTCGAA 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 488
BsaAI YACGTR 1 cut(s) 643
BsaBI GATNNNNATC 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 251, 601
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 539
Bse1I ACTGG 1 cut(s) 154
Bse8I GATNNNNATC 1 cut(s) 314
BseBI CCWGG 2 cut(s) 416, 471
BseDI CCNNGG 2 cut(s) 251, 601
BseGI GGATG 2 cut(s) 143, 262
BseJI GATNNNNATC 1 cut(s) 314
BseLI CCNNNNNNNGG 2 cut(s) 65, 539
BseNI ACTGG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 258
BsiHKAI GWGCWC 3 cut(s) 250, 570, 648
BsiHKCI CYCGRG 1 cut(s) 101
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 65, 539
BsmFI GGGAC 1 cut(s) 313
BsoBI CYCGRG 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 273
Bsp1286I GDGCHC 3 cut(s) 250, 570, 648
Bsp143I GATC 4 cut(s) 370, 495, 588, 636
Bsp19I CCATGG 1 cut(s) 601
BspHI TCATGA 2 cut(s) 352, 662
BspLI GGNNCC 2 cut(s) 599, 638
BspPI GGATC 2 cut(s) 631, 644
BspT104I TTCGAA 1 cut(s) 273
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 2 cut(s) 251, 601
BssMI GATC 4 cut(s) 370, 495, 588, 636
BssNAI GTATAC 1 cut(s) 162
BssT1I CCWWGG 2 cut(s) 251, 601
Bst1107I GTATAC 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 416, 471
Bst6I CTCTTC 1 cut(s) 399
BstBAI YACGTR 1 cut(s) 643
BstBI TTCGAA 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 601
BstF5I GGATG 2 cut(s) 143, 262
BstKTI GATC 4 cut(s) 373, 498, 591, 639
BstMBI GATC 4 cut(s) 370, 495, 588, 636
BstMWI GCNNNNNNNGC 2 cut(s) 176, 245
BstNI CCWGG 2 cut(s) 416, 471
BstNSI RCATGY 1 cut(s) 523
BstSCI CCNGG 2 cut(s) 414, 469
BstX2I RGATCY 1 cut(s) 636
BstYI RGATCY 1 cut(s) 636
BstZ17I GTATAC 1 cut(s) 162
BsuI GTATCC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 601
BtsCI GGATG 2 cut(s) 143, 262
CciI TCATGA 2 cut(s) 352, 662
Csp6I GTAC 3 cut(s) 337, 467, 615
CviAII CATG 8 cut(s) 353, 377, 401, 499, 520, 602, 619, 663
CviJI RGCY 5 cut(s) 170, 220, 248, 456, 561
CviKI_1 RGCY 5 cut(s) 170, 220, 248, 456, 561
CviQI GTAC 3 cut(s) 337, 467, 615
DpnI GATC 4 cut(s) 372, 497, 590, 638
DpnII GATC 4 cut(s) 370, 495, 588, 636
DraIII CACNNNGTG 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Ecl136II GAGCTC 1 cut(s) 248
Eco130I CCWWGG 2 cut(s) 251, 601
Eco24I GRGCYC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 248
Eco72I CACGTG 1 cut(s) 643
Eco88I CYCGRG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 248
EcoRII CCWGG 2 cut(s) 414, 469
EcoT14I CCWWGG 2 cut(s) 251, 601
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 2 cut(s) 251, 601
FaeI CATG 8 cut(s) 356, 380, 404, 502, 523, 605, 622, 666
FaqI GGGAC 1 cut(s) 313
FatI CATG 8 cut(s) 352, 376, 400, 498, 519, 601, 618, 662
FbaI TGATCA 1 cut(s) 495
FblI GTMKAC 1 cut(s) 161
FokI GGATG 2 cut(s) 150, 269
FriOI GRGCYC 1 cut(s) 250
FspBI CTAG 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 261
Hin1II CATG 8 cut(s) 356, 380, 404, 502, 523, 605, 622, 666
HindIII AAGCTT 1 cut(s) 559
HinfI GANTC 3 cut(s) 5, 83, 543
HphI GGTGA 2 cut(s) 317, 646
Hpy166II GTNNAC 2 cut(s) 162, 510
Hpy188I TCNGA 5 cut(s) 82, 128, 192, 214, 426
Hpy188III TCNNGA 3 cut(s) 103, 353, 663
Hpy8I GTNNAC 2 cut(s) 162, 510
HpyAV CCTTC 4 cut(s) 216, 269, 443, 572
HpyCH4IV ACGT 3 cut(s) 12, 20, 642
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 245
HpySE526I ACGT 3 cut(s) 12, 20, 642
Hsp92II CATG 8 cut(s) 356, 380, 404, 502, 523, 605, 622, 666
Ksp22I TGATCA 1 cut(s) 495
Kzo9I GATC 4 cut(s) 370, 495, 588, 636
LmnI GCTCC 4 cut(s) 245, 253, 573, 651
LpnPI CCDG 8 cut(s) 135, 141, 225, 288, 401, 428, 456, 483
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 221
MaeII ACGT 3 cut(s) 12, 20, 642
MaeIII GTNAC 1 cut(s) 581
MalI GATC 4 cut(s) 372, 497, 590, 638
MboI GATC 4 cut(s) 370, 495, 588, 636
MboII GAAGA 4 cut(s) 201, 416, 491, 494
MflI RGATCY 1 cut(s) 636
MhlI GDGCHC 3 cut(s) 250, 570, 648
MluCI AATT 3 cut(s) 62, 92, 268
MlyI GAGTC 1 cut(s) 537
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 6 cut(s) 64, 110, 207, 213, 236, 446
MseI TTAA 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 532
MspR9I CCNGG 2 cut(s) 416, 471
MvaI CCWGG 2 cut(s) 416, 471
MwoI GCNNNNNNNGC 2 cut(s) 176, 245
NcoI CCATGG 1 cut(s) 601
NdeII GATC 4 cut(s) 370, 495, 588, 636
NlaIII CATG 8 cut(s) 356, 380, 404, 502, 523, 605, 622, 666
NlaIV GGNNCC 2 cut(s) 599, 638
NmuCI GTSAC 1 cut(s) 581
NspI RCATGY 1 cut(s) 523
NspV TTCGAA 1 cut(s) 273
PaeR7I CTCGAG 1 cut(s) 101
PagI TCATGA 2 cut(s) 352, 662
PfeI GAWTC 2 cut(s) 5, 83
PflFI GACNNNGTC 1 cut(s) 151
PflMI CCANNNNNTGG 1 cut(s) 65
PleI GAGTC 1 cut(s) 537
PmaCI CACGTG 1 cut(s) 643
PmlI CACGTG 1 cut(s) 643
PpsI GAGTC 1 cut(s) 537
Ppu21I YACGTR 1 cut(s) 643
Psp124BI GAGCTC 1 cut(s) 250
Psp6I CCWGG 2 cut(s) 414, 469
PspCI CACGTG 1 cut(s) 643
PspGI CCWGG 2 cut(s) 414, 469
PspN4I GGNNCC 2 cut(s) 599, 638
PsuI RGATCY 1 cut(s) 636
PsyI GACNNNGTC 1 cut(s) 151
RsaI GTAC 3 cut(s) 338, 468, 616
RsaNI GTAC 3 cut(s) 337, 467, 615
RseI CAYNNNNRTG 1 cut(s) 532
SacI GAGCTC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 26
Sau3AI GATC 4 cut(s) 370, 495, 588, 636
SchI GAGTC 1 cut(s) 537
ScrFI CCNGG 2 cut(s) 416, 471
SduI GDGCHC 3 cut(s) 250, 570, 648
SfaNI GCATC 1 cut(s) 183
Sfr274I CTCGAG 1 cut(s) 101
SfuI TTCGAA 1 cut(s) 273
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 532
SmlI CTYRAG 2 cut(s) 101, 503
SmoI CTYRAG 2 cut(s) 101, 503
Sse9I AATT 3 cut(s) 62, 92, 268
SspMI CTAG 1 cut(s) 221
SstI GAGCTC 1 cut(s) 250
StyD4I CCNGG 2 cut(s) 414, 469
StyI CCWWGG 2 cut(s) 251, 601
TaiI ACGT 3 cut(s) 15, 23, 645
TaqI TCGA 4 cut(s) 102, 273, 397, 546
TasI AATT 3 cut(s) 62, 92, 268
TfiI GAWTC 2 cut(s) 5, 83
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseFI GTSAC 1 cut(s) 581
Tsp45I GTSAC 1 cut(s) 581
TspDTI ATGAA 4 cut(s) 341, 417, 501, 614
TspGWI ACGGA 2 cut(s) 87, 522
Tth111I GACNNNGTC 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 65
XapI RAATTY 2 cut(s) 62, 92
XceI RCATGY 1 cut(s) 523
XhoI CTCGAG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 161
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.