AT1G60130

jacalin-related lectin

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
22173937 .. 22176343
2407 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G60130.2

Sequence Viewer

Length: 1803 bp
ATGTCTCAAGTTTTTTCAAATCTGTTCCAGATGACCCAAAGGTTGGAAGCACAAGGTCAAAAGACCCTGGATAGCCCATTTGTGTGGGATGATGGATCCGACCATGATGACGTAACAAAAATACATGTAAGAGGTGACTCTCGAGGCATAAACTGCATCCGATTTGATTATATCAAGAGTGGACAACGGAAATATAAATCATTCTATGGTCCCTCGTGGGCAGGTTTCACCCAAACGTTTAAGATTAACCATAAAGAAGATGAACAACTTGAATCTGTTGAGGGTTTTTATAAGCCAGACTCGCGTACAATTGTAGGACTTCAATTTAAAACCAACTTGAGGATTTCTGAACTGATAGGACATGGAAAAAAGGATGATACTAAGTTTTCATTAGCTGTGGACGGAAAGAAAATCATCGGGTTTCACGGATGTTCCGGCAGTTACCTAGAGTCTCTTGGAGCATATTTCACTTGCATTGCTCCAACTAGAATGGAAGCAAAAGGAGCAAAAGGAGGAACGGATTGGAACGATGGAGCTGACCATGAAGGTGTTGCAAAAATATACGTCCGAGGTGGGCGTGATTGTATACAATACATCAAGTTCGATTATGTCAAGGATAGAAAATATATATATGGGCCAGCCCATGGTGTCAGGGGTAGAGGTTTCACAGAGTCTTTCGAGATTAACCATCTCGACAATGAATATATGGTATCTGTTGAGGGTTATTATGACGAAGGTGATTCGGGGATCATTCAGGGAATTCAATTCAGAACTAATATCAAGACTTCAGAACTGATAGGATACAACAATGGTAAGAAGTTTTCACTTGCAGCCAATGGAAAGAAGATCATTGGGTTTCATGGATATGCTGACCAGAATCTAAACTCTCTTGGAGCATATTTCACAACCTCTCCTTTTATTAAATTGGAATCCAGGGAATCTACTGGTGATCTCTGGGATGATGGCACTTTTGAAGGTGTAAGGAAGGTGTGCATTCATAAACAGCCGGTTTTATATTCAGTGATCCAATTCGAGTATGTAAACAGAGGCGAGGTGGAAAATCGTGACCTGGGGTTGAGGGTATTTATAGCAGAAGAAGGAGAGTTTGTTGTGAACTATCCTTACGAATTTATCATATCTGTGGAGGGGACATTCACAAATGAAAAAGATCCTCATGTTGCGTCATTGACTTTCAAAACATCAAAAGGGAGAACTTCTTCAACATTTGGAACTCCGGGTACTAAAAAATTTGTGCTTCAGAGCAAAGGTTGTGGCGTTGTTGGGTTCCATGGAGTGTTGTCCAATGATTATATTTCTGGGCTTGGAGCATATTTCCGTCTGCTGCCACCTCTTCCTGACGGAGAAAAAGTAGAAGCAAAAGGTGGTGATGGAGGAGCTTCTTGGGACGATGGCGGTTTTGATTGCATTAGAAAGATATACATAGGACACGGCGAGATGGGTATCGCATTTGTAAAGTTTCTCTACGACAAGGACAATAAGTTCGTGGTCGGAGATGATCATGGGAGCAAGACATTACTTGGAGTTGATGAGTTTGAGTTGGAGCATCCAGATGAATACCTGATATCTGTGGAGGGTAGTTATGATGTAGTAGATGGAAGTGAATCCGAAGTTATACTCATGCTTAGGTTCAAGACCAATATGCGAACCTCTCAAGTCTTTGGACTCGACACAACATCAAGCTTCATACTCGAGAAGGAATGTCACAAGATCGTCGGGTTCCATGGGAAAATAGGTAAGATGCTTCATCAAATTGGGGTCCATGTCTTACCTATTATAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

600

Amino Acids

67.01

Weight (kDa)

5.85

Isoelectric Point (pI)

22.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 18 - 145 4.3e-26 Jacalin-like lectin domain
Jacalin PF01419 154 - 290 5.4e-35 Jacalin-like lectin domain
Jacalin PF01419 304 - 434 1.5e-23 Jacalin-like lectin domain
Jacalin PF01419 447 - 584 1.4e-37 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 212
AccB7I CCANNNNNTGG 2 cut(s) 43, 644
AccI GTMKAC 1 cut(s) 586
AccII CGCG 1 cut(s) 304
AciI CCGC 1 cut(s) 1413
AclI AACGTT 1 cut(s) 236
AclWI GGATC 5 cut(s) 90, 103, 755, 1018, 1163
AcsI RAATTY 3 cut(s) 759, 1127, 1247
AcuI CTGAAG 2 cut(s) 771, 1241
AfaI GTAC 2 cut(s) 307, 1240
AfiI CCNNNNNNNGG 3 cut(s) 43, 339, 644
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 8 cut(s) 18, 272, 323, 764, 974, 1195, 1221, 1651
AjnI CCWGG 3 cut(s) 66, 932, 1068
AloI GAACNNNNNNTCC 2 cut(s) 1484, 1516
AluBI AGCT 4 cut(s) 395, 536, 1397, 1701
AluI AGCT 4 cut(s) 395, 536, 1397, 1701
Alw26I GTCTC 2 cut(s) 9, 456
AlwI GGATC 5 cut(s) 90, 103, 755, 1018, 1163
Ama87I CYCGRG 2 cut(s) 141, 1709
AoxI GGCC 1 cut(s) 635
ApeKI GCWGC 2 cut(s) 830, 1342
ApoI RAATTY 3 cut(s) 759, 1127, 1247
ArsI GACNNNNNNTTYG 2 cut(s) 1484, 1516
Asp700I GAANNNNTTC 1 cut(s) 1216
AspS9I GGNCC 3 cut(s) 209, 635, 1777
AsuC2I CCSGG 1 cut(s) 1236
AsuHPI GGTGA 5 cut(s) 146, 220, 749, 959, 1397
AvaI CYCGRG 2 cut(s) 141, 1709
AvaII GGWCC 2 cut(s) 209, 1777
BamHI GGATCC 1 cut(s) 95
BauI CACGAG 1 cut(s) 214
BbvI GCAGC 2 cut(s) 842, 1329
BccI CCATC 8 cut(s) 86, 524, 696, 956, 1382, 1403, 1450, 1607
BceAI ACGGC 1 cut(s) 1465
BciT130I CCWGG 3 cut(s) 68, 934, 1070
BciVI GTATCC 1 cut(s) 794
BclI TGATCA 1 cut(s) 1516
BcnI CCSGG 1 cut(s) 1236
BcoDI GTCTC 2 cut(s) 9, 456
BfaI CTAG 2 cut(s) 446, 486
BfuAI ACCTGC 1 cut(s) 212
BfuI GTATCC 1 cut(s) 794
BisI GCNGC 2 cut(s) 831, 1343
BlsI GCNGC 2 cut(s) 832, 1344
Bme1390I CCNGG 4 cut(s) 68, 934, 1070, 1236
Bme18I GGWCC 2 cut(s) 209, 1777
BmeT110I CYCGRG 2 cut(s) 141, 1709
BmgT120I GGNCC 3 cut(s) 209, 635, 1777
BmiI GGNNCC 5 cut(s) 97, 211, 1286, 1739, 1778
BmrFI CCNGG 4 cut(s) 68, 934, 1070, 1236
BmsI GCATC 3 cut(s) 165, 1573, 1749
Bpu10I CCTNAGC 1 cut(s) 1643
BpuEI CTTGAG 2 cut(s) 358, 1656
BpuMI CCSGG 1 cut(s) 1236
BsaBI GATNNNNATC 1 cut(s) 1460
BsaJI CCNNGG 7 cut(s) 66, 568, 643, 933, 1069, 1288, 1741
BsaXI ACNNNNNCTCC 6 cut(s) 895, 925, 1092, 1122, 1353, 1383
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 339, 644
Bse118I RCCGGY 1 cut(s) 1006
Bse1I ACTGG 1 cut(s) 949
Bse3DI GCAATG 1 cut(s) 474
Bse8I GATNNNNATC 1 cut(s) 1460
BseBI CCWGG 3 cut(s) 68, 934, 1070
BseDI CCNNGG 7 cut(s) 66, 568, 643, 933, 1069, 1288, 1741
BseGI GGATG 6 cut(s) 94, 156, 379, 434, 964, 1564
BseJI GATNNNNATC 1 cut(s) 1460
BseLI CCNNNNNNNGG 3 cut(s) 43, 339, 644
BseMI GCAATG 1 cut(s) 474
BseNI ACTGG 1 cut(s) 949
BseRI GAGGAG 1 cut(s) 1407
BseXI GCAGC 2 cut(s) 842, 1329
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 1 cut(s) 637
BsiHKCI CYCGRG 2 cut(s) 141, 1709
BsiSI CCGG 3 cut(s) 435, 1007, 1235
BslFI GGGAC 3 cut(s) 195, 1162, 1418
BslI CCNNNNNNNGG 3 cut(s) 43, 339, 644
BsmAI GTCTC 2 cut(s) 9, 456
BsmFI GGGAC 3 cut(s) 195, 1162, 1418
BsmI GAATGC 1 cut(s) 993
BsnI GGCC 1 cut(s) 637
BsoBI CYCGRG 2 cut(s) 141, 1709
Bsp143I GATC 8 cut(s) 95, 747, 846, 949, 1023, 1168, 1516, 1728
Bsp19I CCATGG 3 cut(s) 643, 1288, 1741
BspACI CCGC 1 cut(s) 1413
BspANI GGCC 1 cut(s) 637
BspFNI CGCG 1 cut(s) 304
BspLI GGNNCC 5 cut(s) 97, 211, 1286, 1739, 1778
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 5 cut(s) 90, 103, 755, 1018, 1163
BsrDI GCAATG 1 cut(s) 474
BsrFI RCCGGY 1 cut(s) 1006
BsrI ACTGG 1 cut(s) 949
BssAI RCCGGY 1 cut(s) 1006
BssECI CCNNGG 7 cut(s) 66, 568, 643, 933, 1069, 1288, 1741
BssMI GATC 8 cut(s) 95, 747, 846, 949, 1023, 1168, 1516, 1728
BssNAI GTATAC 1 cut(s) 587
BssSI CACGAG 1 cut(s) 214
BssT1I CCWWGG 3 cut(s) 643, 1288, 1741
Bst1107I GTATAC 1 cut(s) 587
Bst2BI CACGAG 1 cut(s) 214
Bst2UI CCWGG 3 cut(s) 68, 934, 1070
Bst6I CTCTTC 1 cut(s) 1356
BstAPI GCANNNNNTGC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 2 cut(s) 381, 1643
BstDSI CCRYGG 3 cut(s) 643, 1288, 1741
BstF5I GGATG 6 cut(s) 94, 156, 379, 434, 964, 1564
BstFNI CGCG 1 cut(s) 304
BstKTI GATC 8 cut(s) 98, 750, 849, 952, 1026, 1171, 1519, 1731
BstMAI GTCTC 2 cut(s) 9, 456
BstMBI GATC 8 cut(s) 95, 747, 846, 949, 1023, 1168, 1516, 1728
BstMWI GCNNNNNNNGC 3 cut(s) 153, 301, 503
BstNI CCWGG 3 cut(s) 68, 934, 1070
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 4 cut(s) 66, 932, 1068, 1234
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 2 cut(s) 842, 1329
BstX2I RGATCY 2 cut(s) 95, 1168
BstXI CCANNNNNNTGG 1 cut(s) 84
BstYI RGATCY 2 cut(s) 95, 1168
BstZ17I GTATAC 1 cut(s) 587
BsuI GTATCC 1 cut(s) 794
BsuRI GGCC 1 cut(s) 637
BtgI CCRYGG 3 cut(s) 643, 1288, 1741
BtsCI GGATG 6 cut(s) 94, 156, 379, 434, 964, 1564
BtsIMutI CAGTG 1 cut(s) 1026
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 639
Cfr10I RCCGGY 1 cut(s) 1006
Cfr13I GGNCC 3 cut(s) 209, 635, 1777
CseI GACGC 1 cut(s) 1170
Csp6I GTAC 2 cut(s) 306, 1239
CspCI CAANNNNNGTGG 2 cut(s) 1252, 1287
CviQI GTAC 2 cut(s) 306, 1239
DdeI CTNAG 2 cut(s) 381, 1643
DpnI GATC 8 cut(s) 97, 749, 848, 951, 1025, 1170, 1518, 1730
DpnII GATC 8 cut(s) 95, 747, 846, 949, 1023, 1168, 1516, 1728
DraI TTTAAA 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 1356
EarI CTCTTC 1 cut(s) 1356
Eco130I CCWWGG 3 cut(s) 643, 1288, 1741
Eco32I GATATC 1 cut(s) 1584
Eco47I GGWCC 2 cut(s) 209, 1777
Eco57I CTGAAG 2 cut(s) 771, 1241
Eco88I CYCGRG 2 cut(s) 141, 1709
EcoRI GAATTC 1 cut(s) 759
EcoRII CCWGG 3 cut(s) 66, 932, 1068
EcoRV GATATC 1 cut(s) 1584
EcoT14I CCWWGG 3 cut(s) 643, 1288, 1741
ErhI CCWWGG 3 cut(s) 643, 1288, 1741
FaqI GGGAC 3 cut(s) 195, 1162, 1418
FbaI TGATCA 1 cut(s) 1516
FblI GTMKAC 1 cut(s) 586
Fnu4HI GCNGC 2 cut(s) 831, 1343
FokI GGATG 6 cut(s) 101, 143, 386, 441, 971, 1551
Fsp4HI GCNGC 2 cut(s) 831, 1343
FspBI CTAG 2 cut(s) 446, 486
GluI GCNGC 2 cut(s) 831, 1343
HaeIII GGCC 1 cut(s) 637
HapII CCGG 3 cut(s) 435, 1007, 1235
HgaI GACGC 1 cut(s) 1170
HindIII AAGCTT 1 cut(s) 1699
HpaII CCGG 3 cut(s) 435, 1007, 1235
HphI GGTGA 5 cut(s) 146, 220, 749, 959, 1397
Hpy166II GTNNAC 5 cut(s) 182, 400, 587, 1042, 1114
Hpy188I TCNGA 9 cut(s) 100, 161, 349, 569, 770, 790, 1260, 1511, 1627
Hpy8I GTNNAC 5 cut(s) 182, 400, 587, 1042, 1114
Hpy99I CGWCG 1 cut(s) 1736
HpyAV CCTTC 6 cut(s) 539, 728, 968, 979, 1091, 1708
HpyCH4IV ACGT 3 cut(s) 111, 236, 564
HpyCH4V TGCA 6 cut(s) 156, 474, 554, 830, 993, 1425
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 301, 503
HpyF3I CTNAG 2 cut(s) 381, 1643
HpySE526I ACGT 3 cut(s) 111, 236, 564
Ksp22I TGATCA 1 cut(s) 1516
Kzo9I GATC 8 cut(s) 95, 747, 846, 949, 1023, 1168, 1516, 1728
LmnI GCTCC 9 cut(s) 458, 484, 503, 533, 893, 1325, 1394, 1524, 1561
Lsp1109I GCAGC 2 cut(s) 842, 1329
LweI GCATC 3 cut(s) 165, 1573, 1749
MaeI CTAG 2 cut(s) 446, 486
MaeII ACGT 3 cut(s) 111, 236, 564
MaeIII GTNAC 5 cut(s) 112, 134, 440, 1064, 1721
MalI GATC 8 cut(s) 97, 749, 848, 951, 1025, 1170, 1518, 1730
MboI GATC 8 cut(s) 95, 747, 846, 949, 1023, 1168, 1516, 1728
MboII GAAGA 5 cut(s) 269, 856, 1106, 1209, 1343
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 2 cut(s) 95, 1168
MluCI AATT 9 cut(s) 309, 323, 759, 764, 923, 1028, 1127, 1247, 1770
MlyI GAGTC 5 cut(s) 131, 293, 458, 680, 1677
MmeI TCCRAC 5 cut(s) 24, 123, 506, 1489, 1539
MroXI GAANNNNTTC 1 cut(s) 1216
MseI TTAA 5 cut(s) 240, 246, 327, 684, 921
MslI CAYNNNNRTG 5 cut(s) 82, 546, 864, 1139, 1569
MspI CCGG 3 cut(s) 435, 1007, 1235
MspR9I CCNGG 4 cut(s) 68, 934, 1070, 1236
MunI CAATTG 1 cut(s) 309
Mva1269I GAATGC 1 cut(s) 993
MvaI CCWGG 3 cut(s) 68, 934, 1070
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 3 cut(s) 153, 301, 503
NciI CCSGG 1 cut(s) 1236
NcoI CCATGG 3 cut(s) 643, 1288, 1741
NdeII GATC 8 cut(s) 95, 747, 846, 949, 1023, 1168, 1516, 1728
NlaIV GGNNCC 5 cut(s) 97, 211, 1286, 1739, 1778
NmuCI GTSAC 3 cut(s) 134, 1064, 1721
NspI RCATGY 1 cut(s) 128
PaeR7I CTCGAG 2 cut(s) 141, 1709
PciI ACATGT 1 cut(s) 124
PctI GAATGC 1 cut(s) 993
PdmI GAANNNNTTC 1 cut(s) 1216
PfeI GAWTC 6 cut(s) 272, 740, 877, 929, 938, 1622
PflMI CCANNNNNTGG 2 cut(s) 43, 644
PkrI GCNGC 2 cut(s) 832, 1344
PleI GAGTC 5 cut(s) 131, 293, 457, 679, 1677
PpsI GAGTC 5 cut(s) 131, 293, 457, 679, 1677
PscI ACATGT 1 cut(s) 124
PsiI TTATAA 1 cut(s) 291
Psp1406I AACGTT 1 cut(s) 236
Psp6I CCWGG 3 cut(s) 66, 932, 1068
PspGI CCWGG 3 cut(s) 66, 932, 1068
PspN4I GGNNCC 5 cut(s) 97, 211, 1286, 1739, 1778
PspPI GGNCC 3 cut(s) 209, 635, 1777
PsrI GAACNNNNNNTAC 4 cut(s) 1106, 1138, 1222, 1254
PsuI RGATCY 2 cut(s) 95, 1168
RsaI GTAC 2 cut(s) 307, 1240
RsaNI GTAC 2 cut(s) 306, 1239
RseI CAYNNNNRTG 5 cut(s) 82, 546, 864, 1139, 1569
SaqAI TTAA 5 cut(s) 240, 246, 327, 684, 921
SatI GCNGC 2 cut(s) 831, 1343
Sau3AI GATC 8 cut(s) 95, 747, 846, 949, 1023, 1168, 1516, 1728
Sau96I GGNCC 3 cut(s) 209, 635, 1777
SchI GAGTC 5 cut(s) 131, 293, 458, 680, 1677
ScrFI CCNGG 4 cut(s) 68, 934, 1070, 1236
SfaNI GCATC 3 cut(s) 165, 1573, 1749
Sfr274I CTCGAG 2 cut(s) 141, 1709
SinI GGWCC 2 cut(s) 209, 1777
SlaI CTCGAG 2 cut(s) 141, 1709
SmiMI CAYNNNNRTG 5 cut(s) 82, 546, 864, 1139, 1569
SmlI CTYRAG 5 cut(s) 6, 141, 337, 1671, 1709
SmoI CTYRAG 5 cut(s) 6, 141, 337, 1671, 1709
Sse9I AATT 9 cut(s) 309, 323, 759, 764, 923, 1028, 1127, 1247, 1770
SsiI CCGC 1 cut(s) 1413
SspMI CTAG 2 cut(s) 446, 486
StyD4I CCNGG 4 cut(s) 66, 932, 1068, 1234
StyI CCWWGG 3 cut(s) 643, 1288, 1741
TaiI ACGT 3 cut(s) 114, 239, 567
TaqI TCGA 7 cut(s) 142, 603, 678, 693, 1032, 1686, 1710
TasI AATT 9 cut(s) 309, 323, 759, 764, 923, 1028, 1127, 1247, 1770
TfiI GAWTC 6 cut(s) 272, 740, 877, 929, 938, 1622
Tru1I TTAA 5 cut(s) 240, 246, 327, 684, 921
Tru9I TTAA 5 cut(s) 240, 246, 327, 684, 921
TscAI CASTG 1 cut(s) 1026
TseFI GTSAC 3 cut(s) 134, 1064, 1721
TseI GCWGC 2 cut(s) 830, 1342
Tsp45I GTSAC 3 cut(s) 134, 1064, 1721
TspGWI ACGGA 6 cut(s) 202, 417, 441, 533, 1325, 1374
TspRI CASTG 1 cut(s) 1026
Van91I CCANNNNNTGG 2 cut(s) 43, 644
VpaK11BI GGWCC 2 cut(s) 209, 1777
XapI RAATTY 3 cut(s) 759, 1127, 1247
XceI RCATGY 1 cut(s) 128
XhoI CTCGAG 2 cut(s) 141, 1709
XmiI GTMKAC 1 cut(s) 586
XmnI GAANNNNTTC 1 cut(s) 1216
XspI CTAG 2 cut(s) 446, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.