AT1G52030

jacalin-related lectin

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
19345871 .. 19349088
3218 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52030.1

Sequence Viewer

Length: 1929 bp
ATGTCTGAAAAGGTGGGAGCGATGGGTGGTAACAAGGGTGGAGCATTCGACGATGGTGTTTTTGATGGTGTGAAGAAAGTAATTGTTGGAAAAGACTTCAACAATGTAACTTATATCAAGGTTGAATACGAAAAGGACGGAAAATTCGAAATTCGTGAACACGGGACTAATCGCGGGCAGCTAAAAGAGTTTTCAGTGGATTATCCGAATGAATATATCACAGCCGTTGGTGGAAGCTACGACACTGTTTTCGGTTACGGATCAGCGTTGATCAAGTCATTACTCTTCAAAACCTCTTATGGAAGAACCTCTCCAATCCTTGGTCACACGACATTACTAGGGAATCCAGCTGGGAAAGAATTCATGCTCGAGTCCAAATATGGAGGAAAGCTTCTTGGTTTCCATGGACGTTCTGGTGAAGCTCTTGATGCCATTGGACCTCACTTCTTTGCTGTGAACTCTTCTCTTAAGCACTTTAAACCGCAAGGTGGGAATGGAGGGAGTGCTTGGGACGATGGTGCTTTTGATGGTGTTAGAAAAGTGCTTGTTGGGCGAAATGGTAAGTTTGTGAGTTATGTCAGGTTTGAGTATGCGAAAGGAGAAAGAATGGTACCACATGCTCATGGGAAGAGACAAGAAGCTCCACAAGAGTTTGTAGTGGATTATCCTAATGAACATATTACATCGGTCGAGGGAACAATCGATGGTTACCTTTCGTCGCTGAAGTTTACGACATCAAAAGGAAGAACCTCCCCTGTTTTTGGGAATGTGGTCGGTAGTAAATTTGTGTTCGAAGAAACAAGTTTTAAACTTGTTGGGTTTTGTGGTCGATCCGGTGAAGCTATTGATGCTCTTGGTGCACATTTTGCCCCTCTTCCTGCTCCCACTCCAGCTCCCGCGCCCGCGCCCGCGCCCGCTCCAGCTCCAGCTCCCTCGCCCGCTCCCGCTTCTGCGCCCGTTCCAGCTCCCGCACCCACGCCCGCTCCAGCTCCAGCTCCTCCTAACAAAGTGGAAGCTCTAGGAGGAAATGGTGGAACAATATTTGACGATGGTGCTTTCGATCATGTAAGAAAGGTTTATATTGGTCAAGGTGATTCTGGTGTAGCTTATGTGAAGTTCGAATACAGAAAAGATGGGAAAAGAGAGACACGGGAGCATGGAAAAATGACAGTGTTAGGAACAGAGGAGTTTGAGGTTGAGTCTGATGATTACATCACATCAATTGAAGTTTCTGTCGACAATGTCTTTGGTTTTAAGAGTGAAATCGTCACTTCTCTTGTCTTCAAGACCTTTAAGGGAATAACCTCACAACCTTTTGGAATGGAGACTGAGAAGAAATTGGAACTTAAAGACGGTAAAGGAGGAAAACTTGTGGGATTCCATGGGAAAGCTAGTGATGTTCTTTATGCTCTTGGCGCTTATTTCGCTCCAACAACAAATTCAACTACGCCATCGACTCCTTCTACATCTAAGAAACTACAAGCAAGAGGTGGAAATGGAGGAGCTTCTTGGGATGATGGTGTTTTTGATGGTGTTAGAAAGATACTTGTAGGTCAAGGAAACGATGGTGTAGCTTTCGTTACGTTTGAGTACAACAAAGGCTCTCAAGCAATCCTCGGTGATCGTCATGGGAAGCAAACATTACTTGGAACTGAAACGTTTGAGCTTGATTATCCAAGTGAGTACATCACTTCGGTAGAAGGTTACTATGACAAAATTTTCGGAGTTGAAGCTGAAGTGGTGACGAGTCTAACGTTCAAGACTAACAAGAGAACGTCTCAGCCGTTTGGAATGACTGCTGGGGAACATTTCGAGCTTAACGAGGACGGTTACAAGATCGTTGGGTTCCATGGCAAAGCTGGTGATTTGGTTCATCAGATCGGAGTCCATGCCGTGCCCATTTTCACCAATTACAGATGTGTTTTCTAG

Protein Analysis

642

Amino Acids

68.85

Weight (kDa)

6.31

Isoelectric Point (pI)

29.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 5 - 147 5.4e-33 Jacalin-like lectin domain
Jacalin PF01419 160 - 288 1.9e-34 Jacalin-like lectin domain
Jacalin PF01419 337 - 474 3.1e-33 Jacalin-like lectin domain
Jacalin PF01419 494 - 630 8.6e-44 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 610
AccB1I GGYRCC 1 cut(s) 610
AccB7I CCANNNNNTGG 1 cut(s) 320
AccBSI CCGCTC 3 cut(s) 917, 941, 983
AccI GTMKAC 1 cut(s) 1236
AccII CGCG 4 cut(s) 174, 899, 905, 911
AclI AACGTT 2 cut(s) 1658, 1754
AclWI GGATC 2 cut(s) 268, 825
AcsI RAATTY 6 cut(s) 143, 150, 359, 782, 1438, 1716
AcuI CTGAAG 2 cut(s) 743, 1755
AfaI GTAC 3 cut(s) 612, 1592, 1685
AfiI CCNNNNNNNGG 3 cut(s) 320, 488, 761
AflII CTTAAG 1 cut(s) 467
AgsI TTSAA 8 cut(s) 100, 125, 289, 1226, 1285, 1443, 1730, 1759
AjuI GAANNNNNNNTTGG 2 cut(s) 1423, 1455
Alw21I GWGCWC 1 cut(s) 862
Alw26I GTCTC 4 cut(s) 625, 1139, 1319, 1782
Alw44I GTGCAC 1 cut(s) 858
AlwI GGATC 2 cut(s) 268, 825
Ama87I CYCGRG 1 cut(s) 368
ApaLI GTGCAC 1 cut(s) 858
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 6 cut(s) 143, 150, 359, 782, 1438, 1716
ArsI GACNNNNNNTTYG 8 cut(s) 128, 160, 233, 265, 1229, 1261, 1703, 1735
Asp700I GAANNNNTTC 1 cut(s) 359
Asp718I GGTACC 1 cut(s) 610
AspLEI GCGC 5 cut(s) 901, 907, 913, 955, 1418
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 7 cut(s) 428, 848, 1103, 1631, 1753, 1874, 1897
AsuII TTCGAA 3 cut(s) 147, 792, 1119
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 1 cut(s) 437
BaeGI GKGCMC 2 cut(s) 862, 1899
BanI GGYRCC 1 cut(s) 610
BarI GAAGNNNNNNTAC 2 cut(s) 1106, 1138
BbsI GAAGAC 1 cut(s) 1273
Bbv12I GWGCWC 1 cut(s) 862
BbvI GCAGC 1 cut(s) 190
BceAI ACGGC 3 cut(s) 209, 1768, 1877
BclI TGATCA 1 cut(s) 270
BcoDI GTCTC 4 cut(s) 625, 1139, 1319, 1782
BfaI CTAG 4 cut(s) 338, 1019, 1392, 1927
BfoI RGCGCY 1 cut(s) 1419
BfrI CTTAAG 1 cut(s) 467
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 437
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 2 cut(s) 612, 1847
BmsI GCATC 2 cut(s) 418, 838
BpiI GAAGAC 1 cut(s) 1273
BplI GAGNNNNNCTC 2 cut(s) 1762, 1794
BpmI CTGGAG 5 cut(s) 873, 903, 909, 969, 975
Bpu14I TTCGAA 3 cut(s) 147, 792, 1119
BpuEI CTTGAG 1 cut(s) 1590
Bsa29I ATCGAT 1 cut(s) 702
BsaJI CCNNGG 5 cut(s) 319, 403, 1381, 1615, 1849
BsaWI WCCGGW 1 cut(s) 833
BsaXI ACNNNNNCTCC 4 cut(s) 877, 907, 967, 997
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 488, 761
BseCI ATCGAT 1 cut(s) 702
BseDI CCNNGG 5 cut(s) 319, 403, 1381, 1615, 1849
BseGI GGATG 1 cut(s) 1519
BseLI CCNNNNNNNGG 3 cut(s) 320, 488, 761
BseMII CTCAG 2 cut(s) 1320, 1793
BseRI GAGGAG 3 cut(s) 987, 1199, 1515
BseSI GKGCMC 2 cut(s) 862, 1899
BseXI GCAGC 1 cut(s) 190
BseYI CCCAGC 2 cut(s) 350, 1799
Bsh1236I CGCG 4 cut(s) 174, 899, 905, 911
Bsh1285I CGRYCG 1 cut(s) 690
BshNI GGYRCC 1 cut(s) 610
BshVI ATCGAT 1 cut(s) 702
BsiEI CGRYCG 1 cut(s) 690
BsiHKAI GWGCWC 1 cut(s) 862
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 1 cut(s) 834
BslFI GGGAC 2 cut(s) 178, 524
BslI CCNNNNNNNGG 3 cut(s) 320, 488, 761
BsmAI GTCTC 4 cut(s) 625, 1139, 1319, 1782
BsmBI CGTCTC 1 cut(s) 1782
BsmFI GGGAC 2 cut(s) 178, 524
BsmI GAATGC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 368
Bsp119I TTCGAA 3 cut(s) 147, 792, 1119
Bsp1286I GDGCHC 2 cut(s) 862, 1899
Bsp143I GATC 7 cut(s) 260, 270, 830, 1060, 1621, 1836, 1878
Bsp19I CCATGG 3 cut(s) 403, 1381, 1849
BspCNI CTCAG 2 cut(s) 1321, 1792
BspDI ATCGAT 1 cut(s) 702
BspFNI CGCG 4 cut(s) 174, 899, 905, 911
BspLI GGNNCC 2 cut(s) 612, 1847
BspPI GGATC 2 cut(s) 268, 825
BspT104I TTCGAA 3 cut(s) 147, 792, 1119
BspT107I GGYRCC 1 cut(s) 610
BspTI CTTAAG 1 cut(s) 467
BsrBI CCGCTC 3 cut(s) 917, 941, 983
BssECI CCNNGG 5 cut(s) 319, 403, 1381, 1615, 1849
BssMI GATC 7 cut(s) 260, 270, 830, 1060, 1621, 1836, 1878
BssT1I CCWWGG 4 cut(s) 319, 403, 1381, 1849
Bst4CI ACNGT 4 cut(s) 247, 1171, 1355, 1829
Bst6I CTCTTC 4 cut(s) 290, 466, 623, 879
BstAFI CTTAAG 1 cut(s) 467
BstAPI GCANNNNNTGC 1 cut(s) 866
BstBI TTCGAA 3 cut(s) 147, 792, 1119
BstC8I GCNNGC 6 cut(s) 176, 903, 909, 915, 939, 981
BstDEI CTNAG 3 cut(s) 1329, 1470, 1779
BstDSI CCRYGG 3 cut(s) 403, 1381, 1849
BstEII GGTNACC 1 cut(s) 707
BstF5I GGATG 1 cut(s) 1519
BstFNI CGCG 4 cut(s) 174, 899, 905, 911
BstH2I RGCGCY 1 cut(s) 1419
BstHHI GCGC 5 cut(s) 901, 907, 913, 955, 1418
BstKTI GATC 7 cut(s) 263, 273, 833, 1063, 1624, 1839, 1881
BstMAI GTCTC 4 cut(s) 625, 1139, 1319, 1782
BstMBI GATC 7 cut(s) 260, 270, 830, 1060, 1621, 1836, 1878
BstMCI CGRYCG 1 cut(s) 690
BstMWI GCNNNNNNNGC 7 cut(s) 428, 550, 848, 857, 866, 1415, 1424
BstNSI RCATGY 1 cut(s) 620
BstPI GGTNACC 1 cut(s) 707
BstSLI GKGCMC 2 cut(s) 862, 1899
BstUI CGCG 4 cut(s) 174, 899, 905, 911
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 1273
Bsu15I ATCGAT 1 cut(s) 702
BsuTUI ATCGAT 1 cut(s) 702
BtgI CCRYGG 3 cut(s) 403, 1381, 1849
BtgZI GCGATG 1 cut(s) 35
BtsCI GGATG 1 cut(s) 1519
BtsIMutI CAGTG 3 cut(s) 201, 243, 1176
Cac8I GCNNGC 6 cut(s) 176, 903, 909, 915, 939, 981
CfoI GCGC 5 cut(s) 901, 907, 913, 955, 1418
Cfr13I GGNCC 1 cut(s) 437
ClaI ATCGAT 1 cut(s) 702
Csp6I GTAC 3 cut(s) 611, 1591, 1684
CviQI GTAC 3 cut(s) 611, 1591, 1684
DdeI CTNAG 3 cut(s) 1329, 1470, 1779
DpnI GATC 7 cut(s) 262, 272, 832, 1062, 1623, 1838, 1880
DpnII GATC 7 cut(s) 260, 270, 830, 1060, 1621, 1836, 1878
DraI TTTAAA 2 cut(s) 478, 808
Eam1104I CTCTTC 4 cut(s) 290, 466, 623, 879
EarI CTCTTC 4 cut(s) 290, 466, 623, 879
Eco130I CCWWGG 4 cut(s) 319, 403, 1381, 1849
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 2 cut(s) 743, 1755
Eco88I CYCGRG 1 cut(s) 368
Eco91I GGTNACC 1 cut(s) 707
EcoO65I GGTNACC 1 cut(s) 707
EcoRI GAATTC 1 cut(s) 359
EcoT14I CCWWGG 4 cut(s) 319, 403, 1381, 1849
ErhI CCWWGG 4 cut(s) 319, 403, 1381, 1849
Esp3I CGTCTC 1 cut(s) 1782
FaqI GGGAC 2 cut(s) 178, 524
FauI CCCGC 9 cut(s) 167, 904, 910, 916, 922, 946, 952, 976, 988
FbaI TGATCA 1 cut(s) 270
FblI GTMKAC 1 cut(s) 1236
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 1 cut(s) 1526
Fsp4HI GCNGC 1 cut(s) 179
FspBI CTAG 4 cut(s) 338, 1019, 1392, 1927
GlaI GCGC 5 cut(s) 900, 906, 912, 954, 1417
GluI GCNGC 1 cut(s) 179
GsaI CCCAGC 2 cut(s) 354, 1803
GsuI CTGGAG 5 cut(s) 873, 903, 909, 969, 975
HaeII RGCGCY 1 cut(s) 1419
HapII CCGG 1 cut(s) 834
HhaI GCGC 5 cut(s) 901, 907, 913, 955, 1418
Hin6I GCGC 5 cut(s) 899, 905, 911, 953, 1416
HinP1I GCGC 5 cut(s) 899, 905, 911, 953, 1416
HincII GTYRAC 1 cut(s) 1237
HindII GTYRAC 1 cut(s) 1237
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 8 cut(s) 343, 371, 1094, 1199, 1377, 1456, 1747, 1884
HpaII CCGG 1 cut(s) 834
HphI GGTGA 7 cut(s) 428, 848, 1103, 1631, 1753, 1874, 1897
Hpy166II GTNNAC 5 cut(s) 158, 457, 729, 860, 1237
Hpy188I TCNGA 6 cut(s) 7, 207, 1204, 1724, 1878, 1883
Hpy188III TCNNGA 4 cut(s) 155, 425, 1285, 1759
Hpy8I GTNNAC 5 cut(s) 158, 457, 729, 860, 1237
Hpy99I CGWCG 2 cut(s) 53, 721
HpyAV CCTTC 2 cut(s) 1470, 1694
HpyCH4III ACNGT 4 cut(s) 247, 1171, 1355, 1829
HpyCH4IV ACGT 5 cut(s) 409, 1583, 1658, 1754, 1775
HpyCH4V TGCA 1 cut(s) 860
HpyF10VI GCNNNNNNNGC 7 cut(s) 428, 550, 848, 857, 866, 1415, 1424
HpyF3I CTNAG 3 cut(s) 1329, 1470, 1779
HpySE526I ACGT 5 cut(s) 409, 1583, 1658, 1754, 1775
HspAI GCGC 5 cut(s) 899, 905, 911, 953, 1416
KpnI GGTACC 1 cut(s) 614
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 7 cut(s) 260, 270, 830, 1060, 1621, 1836, 1878
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 2 cut(s) 418, 838
MaeI CTAG 4 cut(s) 338, 1019, 1392, 1927
MaeII ACGT 5 cut(s) 409, 1583, 1658, 1754, 1775
MalI GATC 7 cut(s) 262, 272, 832, 1062, 1623, 1838, 1880
MbiI CCGCTC 3 cut(s) 917, 941, 983
MboI GATC 7 cut(s) 260, 270, 830, 1060, 1621, 1836, 1878
MfeI CAATTG 1 cut(s) 1221
MhlI GDGCHC 2 cut(s) 862, 1899
MlyI GAGTC 5 cut(s) 380, 1208, 1450, 1756, 1893
MmeI TCCRAC 2 cut(s) 67, 1454
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 7 cut(s) 468, 477, 807, 1254, 1293, 1347, 1818
MslI CAYNNNNRTG 1 cut(s) 621
MspA1I CMGCKG 1 cut(s) 350
MspCI CTTAAG 1 cut(s) 467
MspI CCGG 1 cut(s) 834
MunI CAATTG 1 cut(s) 1221
Mva1269I GAATGC 1 cut(s) 44
MvnI CGCG 4 cut(s) 174, 899, 905, 911
MwoI GCNNNNNNNGC 7 cut(s) 428, 550, 848, 857, 866, 1415, 1424
NcoI CCATGG 3 cut(s) 403, 1381, 1849
NdeII GATC 7 cut(s) 260, 270, 830, 1060, 1621, 1836, 1878
NlaIV GGNNCC 2 cut(s) 612, 1847
NmuCI GTSAC 3 cut(s) 323, 1267, 1741
NspI RCATGY 1 cut(s) 620
NspV TTCGAA 3 cut(s) 147, 792, 1119
PaeR7I CTCGAG 1 cut(s) 368
PcsI WCGNNNNNNNCGW 4 cut(s) 144, 1751, 1781, 1818
PctI GAATGC 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 3 cut(s) 343, 1094, 1377
PflFI GACNNNGTC 1 cut(s) 1241
PflMI CCANNNNNTGG 1 cut(s) 320
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 5 cut(s) 379, 1207, 1450, 1755, 1892
PpsI GAGTC 5 cut(s) 379, 1207, 1450, 1755, 1892
Psp1406I AACGTT 2 cut(s) 1658, 1754
PspEI GGTNACC 1 cut(s) 707
PspFI CCCAGC 2 cut(s) 350, 1799
PspN4I GGNNCC 2 cut(s) 612, 1847
PspPI GGNCC 1 cut(s) 437
PspXI VCTCGAGB 1 cut(s) 368
PsyI GACNNNGTC 1 cut(s) 1241
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 3 cut(s) 612, 1592, 1685
RsaNI GTAC 3 cut(s) 611, 1591, 1684
RseI CAYNNNNRTG 1 cut(s) 621
SalI GTCGAC 1 cut(s) 1235
SaqAI TTAA 7 cut(s) 468, 477, 807, 1254, 1293, 1347, 1818
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 7 cut(s) 260, 270, 830, 1060, 1621, 1836, 1878
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 5 cut(s) 380, 1208, 1450, 1756, 1893
SduI GDGCHC 2 cut(s) 862, 1899
SfaNI GCATC 2 cut(s) 418, 838
Sfr274I CTCGAG 1 cut(s) 368
SfuI TTCGAA 3 cut(s) 147, 792, 1119
SinI GGWCC 1 cut(s) 437
SlaI CTCGAG 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 621
SmlI CTYRAG 3 cut(s) 368, 467, 1605
SmoI CTYRAG 3 cut(s) 368, 467, 1605
SspI AATATT 1 cut(s) 1041
SspMI CTAG 4 cut(s) 338, 1019, 1392, 1927
StyI CCWWGG 4 cut(s) 319, 403, 1381, 1849
TaaI ACNGT 4 cut(s) 247, 1171, 1355, 1829
TaiI ACGT 5 cut(s) 412, 1586, 1661, 1757, 1778
TaqII GACCGA 1 cut(s) 676
TatI WGTACW 2 cut(s) 1590, 1683
TfiI GAWTC 3 cut(s) 343, 1094, 1377
Tru1I TTAA 7 cut(s) 468, 477, 807, 1254, 1293, 1347, 1818
Tru9I TTAA 7 cut(s) 468, 477, 807, 1254, 1293, 1347, 1818
TscAI CASTG 3 cut(s) 201, 250, 1176
TseFI GTSAC 3 cut(s) 323, 1267, 1741
TseI GCWGC 1 cut(s) 178
Tsp45I GTSAC 3 cut(s) 323, 1267, 1741
TspDTI ATGAA 4 cut(s) 225, 352, 687, 1862
TspGWI ACGGA 2 cut(s) 153, 273
TspRI CASTG 3 cut(s) 201, 250, 1176
Tth111I GACNNNGTC 1 cut(s) 1241
Van91I CCANNNNNTGG 1 cut(s) 320
Vha464I CTTAAG 1 cut(s) 467
VneI GTGCAC 1 cut(s) 858
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 6 cut(s) 143, 150, 359, 782, 1438, 1716
XceI RCATGY 1 cut(s) 620
XcmI CCANNNNNNNNNTGG 2 cut(s) 410, 1856
XhoI CTCGAG 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 1236
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 4 cut(s) 338, 1019, 1392, 1927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.