AT1G52120

Jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000646
Physical Location & Seq
Reverse (-)
19396081 .. 19398244
2164 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52120.2

Sequence Viewer

Length: 1380 bp
ATGTCTCAAGATTCGAATGCGTTAGAGATGATCCAAAACGAAGGGCCTAAGTGGGACGATGGATTTGACCATGATGATGTGACAAAGATATATTTGGTAGGTGGTAAAACCGGCATAGATTTCATCAAGATTGACTATGTCAAGTCTGGAAAACCGAAAAATGGACCATTCCATGGATATTCGGGTGGAGGATTTCTGCAGATGTTTGAGATTGACAATCTCAAAAACGAATATCTAGAATCCGTTGAGGGTTACTACACCAACAGAAGTGGCGAGTTCATTGGAGCAATTCAATTCAAAACCAACTTGAGGGTTTCCGAAATCATAGGATATTCATATTGGGGTTTAAAAAAATTTAAACTGGCAAAACATGGAAATAAAATCATTGGGTTTCAGGGATCTGCTGAGTATCGCCTTAAAGATCTTGATGCATATTTCACTCCCATCACTCCTACAAGAATGGAAGCGCAAGGGGGAAATGGAGGAACAAAGTGGGATGATGGAGGTGACCATGATAGTGTAACAAAGATTCAAGTACGTATTAATAAGGAAGGCATACAATATATCAAATTCAATTATGTCGACAAGGATGGAGATCCGGAGAAGGAGCAACTCCATGGCTCAGAGACGGGTAGAGGATACACGCTAGAACCGTTTGAGATTAACCATAGCGACAAGGAATATCTGCTATCTATTGACGGTTGCTACGACGAAGATTCTGGTGTAATTCAATCACTGCAACTCAAAACCAACATAAAGACTTCAGAAGTAATGGGAGACGATGAAAAGGGTACTAAGTTCACACTTGGATGCAACGGCCATGAGATCATTGGGTTTCATGGATCTGCTCAGGATAACCTAAACGCTCTTGGAGCTTATATCACAACCCTTACTCTAACTAAATTAGAATACATAGGTGAAGGAAGTGACATTTGGGATGATGGTACTTTCGAAGGTGTAAAAAAGGTGTCCTTTTATCATAATGATGGTATAGTAAGGTGTATCGAGTTCGATTACGTTAAGGACGGCAAAATCGAAACCCGTGTGCAGGGGGGGAAGAGGGGAACGGGTGATTTTACAAAAGAAGAGTTTACAGTGGACTATCCAAATGAGTTTCTCACTTCTGTGGAGGGGACTTATAGAGACAACCCTGGCGGCACTCTTATAACGTCGTTGACTTTCAAAACATCAAATAATAGAACCTCTCCAATACTGGGAAAGGCATCTAATAAAACATTCTTGCTCGAGAGCAAAGGTTGTGCTCTTGTTGGGTTCCATGGAGCATCTTCGGATTTTTTTCTTTATGCTTTAGGAGCATATTCTTTTCCGATGACTTCTCTTGCTGAAGCGGGCCGGGGAGCCATACACACAAGCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin TIR

Protein Analysis

459

Amino Acids

50.91

Weight (kDa)

5.12

Isoelectric Point (pI)

19.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 13 - 145 7.8e-27 Jacalin-like lectin domain
Jacalin PF01419 154 - 293 1.5e-34 Jacalin-like lectin domain
Jacalin PF01419 306 - 440 6e-29 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1166
AccB7I CCANNNNNTGG 1 cut(s) 173
AccI GTMKAC 1 cut(s) 582
AccIII TCCGGA 1 cut(s) 598
AciI CCGC 2 cut(s) 1155, 1349
AclWI GGATC 4 cut(s) 25, 406, 590, 850
AcoI YGGCCR 1 cut(s) 817
AcsI RAATTY 2 cut(s) 353, 569
AcuI CTGAAG 2 cut(s) 747, 1365
AfaI GTAC 3 cut(s) 537, 793, 946
AfiI CCNNNNNNNGG 5 cut(s) 161, 173, 309, 1048, 1214
AgsI TTSAA 6 cut(s) 293, 298, 533, 574, 731, 1183
AjnI CCWGG 1 cut(s) 1150
AjuI GAANNNNNNNTTGG 2 cut(s) 916, 948
AleI CACNNNNGTG 1 cut(s) 1124
AluBI AGCT 2 cut(s) 875, 1374
AluI AGCT 2 cut(s) 875, 1374
Alw21I GWGCWC 1 cut(s) 1264
Alw26I GTCTC 4 cut(s) 9, 620, 771, 1137
AlwI GGATC 4 cut(s) 25, 406, 590, 850
Ama87I CYCGRG 1 cut(s) 1244
Aor13HI TCCGGA 1 cut(s) 598
AoxI GGCC 3 cut(s) 44, 817, 1351
ApoI RAATTY 2 cut(s) 353, 569
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AseI ATTAAT 1 cut(s) 543
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 3 cut(s) 44, 164, 1351
AsuC2I CCSGG 1 cut(s) 1355
AsuHPI GGTGA 3 cut(s) 518, 929, 1082
AsuII TTCGAA 2 cut(s) 14, 951
AvaI CYCGRG 1 cut(s) 1244
AvaII GGWCC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 1264
BccI CCATC 6 cut(s) 53, 452, 494, 584, 935, 980
BceAI ACGGC 2 cut(s) 832, 1042
BciT130I CCWGG 1 cut(s) 1152
BciVI GTATCC 1 cut(s) 632
BcnI CCSGG 1 cut(s) 1355
BcoDI GTCTC 4 cut(s) 9, 620, 771, 1137
BfaI CTAG 2 cut(s) 236, 647
BfmI CTRYAG 1 cut(s) 197
BfuI GTATCC 1 cut(s) 632
BglII AGATCT 1 cut(s) 421
BisI GCNGC 1 cut(s) 1156
BlsI GCNGC 1 cut(s) 1157
Bme1390I CCNGG 2 cut(s) 1152, 1355
Bme18I GGWCC 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 1244
BmgT120I GGNCC 3 cut(s) 44, 164, 1351
BmiI GGNNCC 2 cut(s) 1274, 1360
BmrFI CCNGG 2 cut(s) 1152, 1355
BmrI ACTGGG 1 cut(s) 1223
BmsI GCATC 4 cut(s) 418, 800, 1232, 1292
BmuI ACTGGG 1 cut(s) 1223
Bpu10I CCTNAGC 1 cut(s) 849
Bpu14I TTCGAA 2 cut(s) 14, 951
BpuEI CTTGAG 1 cut(s) 328
BpuMI CCSGG 1 cut(s) 1355
BsaAI YACGTR 1 cut(s) 539
BsaBI GATNNNNATC 1 cut(s) 594
BsaJI CCNNGG 5 cut(s) 172, 616, 1150, 1276, 1354
BsaWI WCCGGW 1 cut(s) 598
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 173, 309, 1048, 1214
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 2 cut(s) 366, 1218
Bse8I GATNNNNATC 1 cut(s) 594
BseAI TCCGGA 1 cut(s) 598
BseBI CCWGG 1 cut(s) 1152
BseDI CCNNGG 5 cut(s) 172, 616, 1150, 1276, 1354
BseGI GGATG 4 cut(s) 502, 595, 815, 943
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 5 cut(s) 161, 173, 309, 1048, 1214
BseMII CTCAG 3 cut(s) 396, 636, 863
BseNI ACTGG 2 cut(s) 366, 1218
BsgI GTGCAG 1 cut(s) 1067
BshFI GGCC 3 cut(s) 46, 819, 1353
BsiHKAI GWGCWC 1 cut(s) 1264
BsiHKCI CYCGRG 1 cut(s) 1244
BsiSI CCGG 3 cut(s) 111, 599, 1354
BslFI GGGAC 2 cut(s) 68, 1147
BslI CCNNNNNNNGG 5 cut(s) 161, 173, 309, 1048, 1214
BsmAI GTCTC 4 cut(s) 9, 620, 771, 1137
BsmBI CGTCTC 2 cut(s) 620, 771
BsmFI GGGAC 2 cut(s) 68, 1147
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 3 cut(s) 46, 819, 1353
BsoBI CYCGRG 1 cut(s) 1244
Bsp119I TTCGAA 2 cut(s) 14, 951
Bsp1286I GDGCHC 1 cut(s) 1264
Bsp13I TCCGGA 1 cut(s) 598
Bsp143I GATC 6 cut(s) 30, 398, 421, 595, 825, 842
Bsp19I CCATGG 3 cut(s) 172, 616, 1276
BspACI CCGC 2 cut(s) 1155, 1349
BspANI GGCC 3 cut(s) 46, 819, 1353
BspCNI CTCAG 3 cut(s) 397, 635, 862
BspEI TCCGGA 1 cut(s) 598
BspLI GGNNCC 2 cut(s) 1274, 1360
BspMAI CTGCAG 1 cut(s) 201
BspPI GGATC 4 cut(s) 25, 406, 590, 850
BspT104I TTCGAA 2 cut(s) 14, 951
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 2 cut(s) 366, 1218
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 5 cut(s) 172, 616, 1150, 1276, 1354
BssMI GATC 6 cut(s) 30, 398, 421, 595, 825, 842
BssT1I CCWWGG 3 cut(s) 172, 616, 1276
Bst2UI CCWGG 1 cut(s) 1152
Bst4CI ACNGT 3 cut(s) 654, 701, 1096
Bst6I CTCTTC 2 cut(s) 1052, 1080
BstBAI YACGTR 1 cut(s) 539
BstBI TTCGAA 2 cut(s) 14, 951
BstC8I GCNNGC 1 cut(s) 1351
BstDEI CTNAG 5 cut(s) 48, 405, 622, 795, 849
BstDSI CCRYGG 3 cut(s) 172, 616, 1276
BstEII GGTNACC 1 cut(s) 506
BstF5I GGATG 4 cut(s) 502, 595, 815, 943
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 6 cut(s) 33, 401, 424, 598, 828, 845
BstMAI GTCTC 4 cut(s) 9, 620, 771, 1137
BstMBI GATC 6 cut(s) 30, 398, 421, 595, 825, 842
BstMWI GCNNNNNNNGC 2 cut(s) 872, 1313
BstNI CCWGG 1 cut(s) 1152
BstPI GGTNACC 1 cut(s) 506
BstSCI CCNGG 2 cut(s) 1150, 1353
BstSFI CTRYAG 1 cut(s) 197
BstSNI TACGTA 1 cut(s) 539
BstX2I RGATCY 4 cut(s) 398, 421, 595, 842
BstYI RGATCY 4 cut(s) 398, 421, 595, 842
BsuI GTATCC 1 cut(s) 632
BsuRI GGCC 3 cut(s) 46, 819, 1353
BtgI CCRYGG 3 cut(s) 172, 616, 1276
BtsCI GGATG 4 cut(s) 502, 595, 815, 943
BtsI GCAGTG 1 cut(s) 734
BtsIMutI CAGTG 2 cut(s) 734, 1101
Cac8I GCNNGC 1 cut(s) 1351
CfoI GCGC 1 cut(s) 469
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 44, 164, 1351
Csp6I GTAC 3 cut(s) 536, 792, 945
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviAII CATG 8 cut(s) 71, 173, 371, 512, 617, 821, 839, 1277
CviJI RGCY 7 cut(s) 46, 621, 819, 875, 1353, 1361, 1374
CviKI_1 RGCY 7 cut(s) 46, 621, 819, 875, 1353, 1361, 1374
CviQI GTAC 3 cut(s) 536, 792, 945
DdeI CTNAG 5 cut(s) 48, 405, 622, 795, 849
DpnI GATC 6 cut(s) 32, 400, 423, 597, 827, 844
DpnII GATC 6 cut(s) 30, 398, 421, 595, 825, 842
DraI TTTAAA 2 cut(s) 348, 358
EaeI YGGCCR 1 cut(s) 817
Eam1104I CTCTTC 2 cut(s) 1052, 1080
EarI CTCTTC 2 cut(s) 1052, 1080
Eco105I TACGTA 1 cut(s) 539
Eco130I CCWWGG 3 cut(s) 172, 616, 1276
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 2 cut(s) 747, 1365
Eco88I CYCGRG 1 cut(s) 1244
Eco91I GGTNACC 1 cut(s) 506
EcoO109I RGGNCCY 1 cut(s) 44
EcoO65I GGTNACC 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 1150
EcoT14I CCWWGG 3 cut(s) 172, 616, 1276
EcoT22I ATGCAT 1 cut(s) 433
ErhI CCWWGG 3 cut(s) 172, 616, 1276
Esp3I CGTCTC 2 cut(s) 620, 771
FaeI CATG 8 cut(s) 74, 176, 374, 515, 620, 824, 842, 1280
FalI AAGNNNNNCTT 2 cut(s) 956, 988
FaqI GGGAC 2 cut(s) 68, 1147
FatI CATG 8 cut(s) 70, 172, 370, 511, 616, 820, 838, 1276
FauI CCCGC 1 cut(s) 1342
FblI GTMKAC 1 cut(s) 582
Fnu4HI GCNGC 1 cut(s) 1156
FokI GGATG 4 cut(s) 509, 602, 822, 950
Fsp4HI GCNGC 1 cut(s) 1156
FspBI CTAG 2 cut(s) 236, 647
GlaI GCGC 1 cut(s) 468
GluI GCNGC 1 cut(s) 1156
HaeIII GGCC 3 cut(s) 46, 819, 1353
HapII CCGG 3 cut(s) 111, 599, 1354
HhaI GCGC 1 cut(s) 469
Hin1II CATG 8 cut(s) 74, 176, 374, 515, 620, 824, 842, 1280
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HincII GTYRAC 2 cut(s) 583, 1176
HindII GTYRAC 2 cut(s) 583, 1176
HinfI GANTC 4 cut(s) 11, 239, 529, 716
HpaII CCGG 3 cut(s) 111, 599, 1354
HphI GGTGA 3 cut(s) 518, 929, 1082
Hpy166II GTNNAC 5 cut(s) 583, 801, 1092, 1099, 1176
Hpy188I TCNGA 5 cut(s) 319, 625, 766, 1291, 1329
Hpy188III TCNNGA 8 cut(s) 8, 127, 147, 236, 425, 599, 851, 1246
Hpy8I GTNNAC 5 cut(s) 583, 801, 1092, 1099, 1176
Hpy99I CGWCG 2 cut(s) 713, 1174
HpyAV CCTTC 5 cut(s) 35, 545, 598, 914, 947
HpyCH4III ACNGT 3 cut(s) 654, 701, 1096
HpyCH4IV ACGT 3 cut(s) 538, 1017, 1169
HpyCH4V TGCA 5 cut(s) 199, 431, 739, 813, 1048
HpyF10VI GCNNNNNNNGC 2 cut(s) 872, 1313
HpyF3I CTNAG 5 cut(s) 48, 405, 622, 795, 849
HpySE526I ACGT 3 cut(s) 538, 1017, 1169
Hsp92II CATG 8 cut(s) 74, 176, 374, 515, 620, 824, 842, 1280
HspAI GCGC 1 cut(s) 467
Kpn2I TCCGGA 1 cut(s) 598
Kzo9I GATC 6 cut(s) 30, 398, 421, 595, 825, 842
LmnI GCTCC 6 cut(s) 284, 607, 872, 1280, 1313, 1358
LweI GCATC 4 cut(s) 418, 800, 1232, 1292
MaeI CTAG 2 cut(s) 236, 647
MaeII ACGT 3 cut(s) 538, 1017, 1169
MaeIII GTNAC 5 cut(s) 79, 251, 506, 520, 926
MalI GATC 6 cut(s) 32, 400, 423, 597, 827, 844
MboI GATC 6 cut(s) 30, 398, 421, 595, 825, 842
MboII GAAGA 4 cut(s) 725, 1069, 1097, 1278
MflI RGATCY 4 cut(s) 398, 421, 595, 842
MhlI GDGCHC 1 cut(s) 1264
MluCI AATT 7 cut(s) 288, 293, 353, 569, 574, 726, 902
MnlI CCTC 9 cut(s) 182, 241, 303, 476, 497, 629, 1053, 1123, 1213
Mph1103I ATGCAT 1 cut(s) 433
MroI TCCGGA 1 cut(s) 598
MseI TTAA 6 cut(s) 347, 357, 417, 543, 663, 1020
MslI CAYNNNNRTG 5 cut(s) 75, 516, 808, 984, 1124
MspI CCGG 3 cut(s) 111, 599, 1354
MspR9I CCNGG 2 cut(s) 1152, 1355
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 1152
MwoI GCNNNNNNNGC 2 cut(s) 872, 1313
NciI CCSGG 1 cut(s) 1355
NcoI CCATGG 3 cut(s) 172, 616, 1276
NdeII GATC 6 cut(s) 30, 398, 421, 595, 825, 842
NlaIII CATG 8 cut(s) 74, 176, 374, 515, 620, 824, 842, 1280
NlaIV GGNNCC 2 cut(s) 1274, 1360
NmuCI GTSAC 3 cut(s) 79, 506, 926
NsiI ATGCAT 1 cut(s) 433
NspV TTCGAA 2 cut(s) 14, 951
OliI CACNNNNGTG 1 cut(s) 1124
PaeR7I CTCGAG 1 cut(s) 1244
PcsI WCGNNNNNNNCGW 3 cut(s) 650, 705, 1032
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 4 cut(s) 11, 239, 529, 716
PflFI GACNNNGTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 173
PkrI GCNGC 1 cut(s) 1157
Ppu21I YACGTR 1 cut(s) 539
PshBI ATTAAT 1 cut(s) 543
PsiI TTATAA 1 cut(s) 1166
Psp6I CCWGG 1 cut(s) 1150
PspEI GGTNACC 1 cut(s) 506
PspGI CCWGG 1 cut(s) 1150
PspN4I GGNNCC 2 cut(s) 1274, 1360
PspPI GGNCC 3 cut(s) 44, 164, 1351
PstI CTGCAG 1 cut(s) 201
PsuI RGATCY 4 cut(s) 398, 421, 595, 842
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 3 cut(s) 537, 793, 946
RsaNI GTAC 3 cut(s) 536, 792, 945
RseI CAYNNNNRTG 5 cut(s) 75, 516, 808, 984, 1124
SalI GTCGAC 1 cut(s) 581
SaqAI TTAA 6 cut(s) 347, 357, 417, 543, 663, 1020
SatI GCNGC 1 cut(s) 1156
Sau3AI GATC 6 cut(s) 30, 398, 421, 595, 825, 842
Sau96I GGNCC 3 cut(s) 44, 164, 1351
ScrFI CCNGG 2 cut(s) 1152, 1355
SduI GDGCHC 1 cut(s) 1264
SfaNI GCATC 4 cut(s) 418, 800, 1232, 1292
SfcI CTRYAG 1 cut(s) 197
Sfr274I CTCGAG 1 cut(s) 1244
SfuI TTCGAA 2 cut(s) 14, 951
SinI GGWCC 1 cut(s) 164
SlaI CTCGAG 1 cut(s) 1244
SmiMI CAYNNNNRTG 5 cut(s) 75, 516, 808, 984, 1124
SmlI CTYRAG 3 cut(s) 6, 307, 1244
SmoI CTYRAG 3 cut(s) 6, 307, 1244
SnaBI TACGTA 1 cut(s) 539
Sse9I AATT 7 cut(s) 288, 293, 353, 569, 574, 726, 902
SsiI CCGC 2 cut(s) 1155, 1349
SspMI CTAG 2 cut(s) 236, 647
StyD4I CCNGG 2 cut(s) 1150, 1353
StyI CCWWGG 3 cut(s) 172, 616, 1276
TaaI ACNGT 3 cut(s) 654, 701, 1096
TaiI ACGT 3 cut(s) 541, 1020, 1172
TaqI TCGA 7 cut(s) 14, 582, 951, 1005, 1011, 1035, 1245
TasI AATT 7 cut(s) 288, 293, 353, 569, 574, 726, 902
TauI GCSGC 1 cut(s) 1158
TfiI GAWTC 4 cut(s) 11, 239, 529, 716
Tru1I TTAA 6 cut(s) 347, 357, 417, 543, 663, 1020
Tru9I TTAA 6 cut(s) 347, 357, 417, 543, 663, 1020
TscAI CASTG 2 cut(s) 741, 1101
TseFI GTSAC 3 cut(s) 79, 506, 926
Tsp45I GTSAC 3 cut(s) 79, 506, 926
TspDTI ATGAA 5 cut(s) 112, 268, 324, 798, 827
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 2 cut(s) 741, 1101
Tth111I GACNNNGTC 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 164
VspI ATTAAT 1 cut(s) 543
XapI RAATTY 2 cut(s) 353, 569
XbaI TCTAGA 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 827
XhoI CTCGAG 1 cut(s) 1244
XmiI GTMKAC 1 cut(s) 582
XspI CTAG 2 cut(s) 236, 647
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.