AT3G59620

jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000646
Physical Location & Seq
Forward (+)
22023435 .. 22024700
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59620.2

Sequence Viewer

Length: 363 bp
ATGGCATTTCGTATGAGCCGAGATCATGCGGACTTTGTTGCTCATGGTGGAACCGAGTGGGATGATGGGGCCTTCGTGAACGTTAAGAAGATAAAAATATTTCACGATTGGGCTGGTATCACCTTGGTTCAGTTTGACTATATCGACGGCACGGGGGCTATTGTAAGCGGTCTCGATCACGGGACAGAACCTTTTCAATTTGATAGAGAACACGGGAGGGTTCCAGTCGAGGGTGCTCGAGCAGAGTTTTGGCTGAGAGACGATGAATACATCACAATCGTCACAGCATTCGGCGGATATTGTGTGAGGAAGATTGAGTTCATCACAAACAAGCGAACCTTTGACTTCGGTGGTTTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0009506 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

120

Amino Acids

13.67

Weight (kDa)

5.23

Isoelectric Point (pI)

20.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 15 - 117 3.4e-12 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 29, 168, 294
AclI AACGTT 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 1 cut(s) 197
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 2 cut(s) 176, 252
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 1 cut(s) 69
Asp700I GAANNNNTTC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 238
BccI CCATC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 176, 252
BmeT110I CYCGRG 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 3 cut(s) 52, 70, 222
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 224
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 2 cut(s) 176, 252
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 196
BsmI GAATGC 1 cut(s) 287
BsnI GGCC 1 cut(s) 71
Bso31I GGTCTC 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 2 cut(s) 22, 175
BspACI CCGC 3 cut(s) 29, 168, 294
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 3 cut(s) 52, 70, 222
BspTNI GGTCTC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 2 cut(s) 22, 175
BssT1I CCWWGG 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 2 cut(s) 25, 178
BstMAI GTCTC 2 cut(s) 176, 252
BstMBI GATC 2 cut(s) 22, 175
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 69
CviAII CATG 2 cut(s) 26, 44
CviJI RGCY 5 cut(s) 18, 71, 113, 158, 253
CviKI_1 RGCY 5 cut(s) 18, 71, 113, 158, 253
DdeI CTNAG 1 cut(s) 254
DpnI GATC 2 cut(s) 24, 177
DpnII GATC 2 cut(s) 22, 175
EciI GGCGGA 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 123
Eco31I GGTCTC 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 2 cut(s) 29, 47
FaiI YATR 4 cut(s) 14, 27, 45, 141
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FaqI GGGAC 1 cut(s) 196
FatI CATG 2 cut(s) 25, 43
FokI GGATG 1 cut(s) 74
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 2 cut(s) 29, 47
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 79
Hpy188III TCNNGA 3 cut(s) 76, 104, 173
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 2 cut(s) 29, 47
Kzo9I GATC 2 cut(s) 22, 175
LpnPI CCDG 2 cut(s) 99, 237
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 24, 177
MboI GATC 2 cut(s) 22, 175
MboII GAAGA 2 cut(s) 100, 322
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 2 cut(s) 197, 358
MnlI CCTC 3 cut(s) 210, 223, 300
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 2 cut(s) 84, 357
Mva1269I GAATGC 1 cut(s) 287
NdeII GATC 2 cut(s) 22, 175
NlaIII CATG 2 cut(s) 29, 47
NlaIV GGNNCC 3 cut(s) 52, 70, 222
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 280
PaeR7I CTCGAG 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 16
PctI GAATGC 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 192
Psp1406I AACGTT 1 cut(s) 81
PspN4I GGNNCC 3 cut(s) 52, 70, 222
PspPI GGNCC 1 cut(s) 69
PspXI VCTCGAGB 1 cut(s) 237
SaqAI TTAA 2 cut(s) 84, 357
Sau3AI GATC 2 cut(s) 22, 175
Sau96I GGNCC 1 cut(s) 69
SduI GDGCHC 1 cut(s) 238
SetI ASST 4 cut(s) 84, 125, 193, 341
Sfr274I CTCGAG 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse9I AATT 2 cut(s) 197, 358
SsiI CCGC 3 cut(s) 29, 168, 294
SspI AATATT 1 cut(s) 99
StyI CCWWGG 1 cut(s) 123
TaiI ACGT 1 cut(s) 84
TaqI TCGA 4 cut(s) 144, 174, 228, 238
TasI AATT 2 cut(s) 197, 358
Tru1I TTAA 2 cut(s) 84, 357
Tru9I TTAA 2 cut(s) 84, 357
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 2 cut(s) 279, 310
XhoI CTCGAG 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.