AT1G52130

Jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000646
Physical Location & Seq
Reverse (-)
19400510 .. 19402789
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52130.2

Sequence Viewer

Length: 1452 bp
ATGACCCAAAAGTTGGAATCGGTAGGTTCCGAGAGAAAGTCAAGCGAATATATGTGGGATGATGGATCCGAACATGATGATGTGACAAAGATATATGTACGAGGTGGTACTAAAGGCATAGAATTTATCAAGTTTGGCTATGTCAAGGCCGGAGAATTGTTAGATGGATCATTCCATGGTTATTCAGACACAGGTTTCACACAGATGTTTGAGATTGATCATCGAAAAAATGAACATCTTTTATCTGTCGAGGGTTACTTTGATTACTATAACGATATAATGTATGCGATTCAATTCAAAACCAACTTGAAGATCTCTGAAATAATGGGCTATGAATATTCTGGTCACAAGTTTACGCTAGCAATGGAGGGCAAAAAAATCATTGGGTTTCACGGTTTTGCTGATGTTAACCTCAGAGCTCTTGGAGCATATGTTACTTGGATAACTCCTGCAAGAATGGAAGCCAAAGGGGGCAAAGGAGGCAATGAATGGGATGATGGAGGTGACTATGAGGCTGTAACAAAGATTCATGGACGAAGTGATCATAAAGGTATAAAAGACATCATATTCGATTATGTTGACAAGGATGGGCATCCCAAAAGTGAAACCCATGGTCCTACCTCGGGTCAGGGTTACGTACTTGAGCCGTTTGAGATTAACCATCTCGACAAGGAATATCTGATGTCTATTGATGGTTACTATGATGATGCATCCGGTGTCATTCAAGCACTGCAATTCAAAACCAACATGAAGACTTCGGAACTTATGGGCTACTATGACGATGATGCTGTGAAGTTTACAATTGGATGCACTGTTAATAAGATCATTGGGTTTCATGGACATGCTGGCAAGAACCTATATTCTCTCGGAGCATATTTCACAACACTTCCTCTAACTAAATTGGAATACGAAGATAGTTTTCGTGAAAAGCTTCCTAAGAATGGTGCTTCAGGTAACCTTTGGGATGATGGTAGTTTCCAAGGAGTAAAAAAGGTGCATATATATTATGATGGATATAGCGTGCGGTGTGTTCGGTTCGATTATGATGACGACGGCAAAGTCGAATCCCGTGAGCACGGGCCGAAAATTGTTGCCGCAGTACAAGAAGGAGGGTTTGTCCTGGACTATCCAAATGAGGTTATTACGTCCGTGGAGGGCATTGCCACTGTCGTTAATACTGGACTCAGCTTTAGTACTGGAAATGTGATGATTAAATCGTTGACTTTCAAAACATCAAAAGGTAGAACCTCTCCGACATTTGGTAATGTGTTTGGTAACTATCTTTCAGAATTTAAGCTTGAGAGCCAAGGCTGTGCTATTGTTGGGTTCCATGGACGGTCTTCTTATAATTCTATTCATGGTCTTGGAGCATATTTTTTCCCGATGCCTCCTTCTCATGATGGGAAAGCACTGGAAGAACAAGGTGGTGATGGTGGTTTGGGCGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin TIR

Protein Analysis

483

Amino Acids

53.57

Weight (kDa)

5.4

Isoelectric Point (pI)

22.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 16 - 144 4.1e-27 Jacalin-like lectin domain
Jacalin PF01419 153 - 292 3e-30 Jacalin-like lectin domain
Jacalin PF01419 315 - 458 2.2e-27 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1347
AasI GACNNNNNNGTC 1 cut(s) 1058
AccB7I CCANNNNNTGG 1 cut(s) 13
AciI CCGC 3 cut(s) 1024, 1095, 1443
AclWI GGATC 3 cut(s) 60, 73, 175
AcsI RAATTY 2 cut(s) 122, 1289
AcuI CTGAAG 1 cut(s) 933
AfaI GTAC 5 cut(s) 99, 109, 639, 1101, 1195
AfiI CCNNNNNNNGG 4 cut(s) 13, 623, 941, 1259
AgsI TTSAA 6 cut(s) 293, 298, 310, 725, 739, 1228
AjnI CCWGG 1 cut(s) 1119
AluBI AGCT 4 cut(s) 419, 931, 1188, 1297
AluI AGCT 4 cut(s) 419, 931, 1188, 1297
Alw21I GWGCWC 2 cut(s) 421, 1077
AlwI GGATC 3 cut(s) 60, 73, 175
Ama87I CYCGRG 1 cut(s) 622
AoxI GGCC 2 cut(s) 147, 1079
ApoI RAATTY 2 cut(s) 122, 1289
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
Asp700I GAANNNNTTC 1 cut(s) 930
AspS9I GGNCC 2 cut(s) 614, 1079
AsuHPI GGTGA 2 cut(s) 515, 1439
AsuNHI GCTAGC 1 cut(s) 358
AvaI CYCGRG 1 cut(s) 622
AvaII GGWCC 1 cut(s) 614
BamHI GGATCC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 421
BbsI GAAGAC 2 cut(s) 758, 1332
Bbv12I GWGCWC 2 cut(s) 421, 1077
BceAI ACGGC 2 cut(s) 631, 1069
BciT130I CCWGG 1 cut(s) 1121
BclI TGATCA 2 cut(s) 217, 541
BfaI CTAG 1 cut(s) 359
BglII AGATCT 1 cut(s) 312
BisI GCNGC 1 cut(s) 1095
BlsI GCNGC 1 cut(s) 1096
BmcAI AGTACT 1 cut(s) 1195
Bme1390I CCNGG 1 cut(s) 1121
Bme18I GGWCC 1 cut(s) 614
BmeT110I CYCGRG 1 cut(s) 622
BmgT120I GGNCC 2 cut(s) 614, 1079
BmiI GGNNCC 3 cut(s) 28, 67, 1328
BmrFI CCNGG 1 cut(s) 1121
BmsI GCATC 6 cut(s) 601, 697, 719, 775, 797, 1374
BmtI GCTAGC 1 cut(s) 362
BpiI GAAGAC 2 cut(s) 758, 1332
BpuEI CTTGAG 2 cut(s) 662, 1319
BsaAI YACGTR 1 cut(s) 637
BsaBI GATNNNNATC 1 cut(s) 591
BsaJI CCNNGG 7 cut(s) 175, 610, 621, 979, 1149, 1306, 1330
BsaWI WCCGGW 1 cut(s) 713
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 1101, 1131
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 623, 941, 1259
Bse1I ACTGG 3 cut(s) 1183, 1201, 1416
Bse3DI GCAATG 3 cut(s) 369, 490, 1158
Bse8I GATNNNNATC 1 cut(s) 591
BseBI CCWGG 1 cut(s) 1121
BseDI CCNNGG 7 cut(s) 175, 610, 621, 979, 1149, 1306, 1330
BseGI GGATG 7 cut(s) 64, 499, 592, 592, 710, 812, 970
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 4 cut(s) 13, 623, 941, 1259
BseMI GCAATG 3 cut(s) 369, 490, 1158
BseMII CTCAG 2 cut(s) 427, 1198
BseNI ACTGG 3 cut(s) 1183, 1201, 1416
BshFI GGCC 2 cut(s) 149, 1081
BsiHKAI GWGCWC 2 cut(s) 421, 1077
BsiHKCI CYCGRG 1 cut(s) 622
BsiSI CCGG 2 cut(s) 150, 714
BslI CCNNNNNNNGG 4 cut(s) 13, 623, 941, 1259
BsnI GGCC 2 cut(s) 149, 1081
BsoBI CYCGRG 1 cut(s) 622
Bsp1286I GDGCHC 2 cut(s) 421, 1077
Bsp143I GATC 6 cut(s) 65, 167, 217, 312, 541, 822
Bsp19I CCATGG 3 cut(s) 175, 610, 1330
BspACI CCGC 3 cut(s) 1024, 1095, 1443
BspANI GGCC 2 cut(s) 149, 1081
BspCNI CTCAG 2 cut(s) 426, 1197
BspHI TCATGA 1 cut(s) 1396
BspLI GGNNCC 3 cut(s) 28, 67, 1328
BspOI GCTAGC 1 cut(s) 362
BspPI GGATC 3 cut(s) 60, 73, 175
BsrDI GCAATG 3 cut(s) 369, 490, 1158
BsrI ACTGG 3 cut(s) 1183, 1201, 1416
BssECI CCNNGG 7 cut(s) 175, 610, 621, 979, 1149, 1306, 1330
BssMI GATC 6 cut(s) 65, 167, 217, 312, 541, 822
BssT1I CCWWGG 5 cut(s) 175, 610, 979, 1306, 1330
Bst2UI CCWGG 1 cut(s) 1121
Bst4CI ACNGT 4 cut(s) 395, 814, 1168, 1338
BstBAI YACGTR 1 cut(s) 637
BstC8I GCNNGC 3 cut(s) 360, 847, 1022
BstDEI CTNAG 3 cut(s) 413, 936, 1184
BstDSI CCRYGG 4 cut(s) 175, 610, 1149, 1330
BstEII GGTNACC 1 cut(s) 953
BstF5I GGATG 7 cut(s) 64, 499, 592, 592, 710, 812, 970
BstKTI GATC 6 cut(s) 68, 170, 220, 315, 544, 825
BstMBI GATC 6 cut(s) 65, 167, 217, 312, 541, 822
BstMWI GCNNNNNNNGC 2 cut(s) 425, 480
BstNI CCWGG 1 cut(s) 1121
BstNSI RCATGY 1 cut(s) 845
BstPI GGTNACC 1 cut(s) 953
BstSCI CCNGG 1 cut(s) 1119
BstSNI TACGTA 1 cut(s) 637
BstV2I GAAGAC 2 cut(s) 758, 1332
BstX2I RGATCY 2 cut(s) 65, 312
BstYI RGATCY 2 cut(s) 65, 312
BsuRI GGCC 2 cut(s) 149, 1081
BtgI CCRYGG 4 cut(s) 175, 610, 1149, 1330
BtsCI GGATG 7 cut(s) 64, 499, 592, 592, 710, 812, 970
BtsI GCAGTG 1 cut(s) 728
BtsIMutI CAGTG 4 cut(s) 728, 810, 1164, 1409
Cac8I GCNNGC 3 cut(s) 360, 847, 1022
CciI TCATGA 1 cut(s) 1396
Cfr13I GGNCC 2 cut(s) 614, 1079
Csp6I GTAC 5 cut(s) 98, 108, 638, 1100, 1194
CviQI GTAC 5 cut(s) 98, 108, 638, 1100, 1194
DdeI CTNAG 3 cut(s) 413, 936, 1184
DpnI GATC 6 cut(s) 67, 169, 219, 314, 543, 824
DpnII GATC 6 cut(s) 65, 167, 217, 312, 541, 822
DrdI GACNNNNNNGTC 1 cut(s) 1058
DseDI GACNNNNNNGTC 1 cut(s) 1058
Ecl136II GAGCTC 1 cut(s) 419
Eco105I TACGTA 1 cut(s) 637
Eco130I CCWWGG 5 cut(s) 175, 610, 979, 1306, 1330
Eco24I GRGCYC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 614
Eco53kI GAGCTC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 933
Eco88I CYCGRG 1 cut(s) 622
Eco91I GGTNACC 1 cut(s) 953
EcoICRI GAGCTC 1 cut(s) 419
EcoO65I GGTNACC 1 cut(s) 953
EcoRII CCWGG 1 cut(s) 1119
EcoT14I CCWWGG 5 cut(s) 175, 610, 979, 1306, 1330
EcoT22I ATGCAT 1 cut(s) 712
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 5 cut(s) 175, 610, 979, 1306, 1330
FauNDI CATATG 1 cut(s) 430
FbaI TGATCA 2 cut(s) 217, 541
Fnu4HI GCNGC 1 cut(s) 1095
FokI GGATG 7 cut(s) 71, 506, 579, 599, 697, 819, 977
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 1 cut(s) 1095
FspBI CTAG 1 cut(s) 359
GluI GCNGC 1 cut(s) 1095
HaeIII GGCC 2 cut(s) 149, 1081
HapII CCGG 2 cut(s) 150, 714
HincII GTYRAC 3 cut(s) 409, 580, 1221
HindII GTYRAC 3 cut(s) 409, 580, 1221
HindIII AAGCTT 2 cut(s) 929, 1295
HinfI GANTC 5 cut(s) 17, 289, 526, 1064, 1182
HpaI GTTAAC 1 cut(s) 409
HpaII CCGG 2 cut(s) 150, 714
HphI GGTGA 2 cut(s) 515, 1439
Hpy166II GTNNAC 5 cut(s) 354, 409, 580, 798, 1221
Hpy188III TCNNGA 4 cut(s) 665, 923, 1381, 1397
Hpy8I GTNNAC 5 cut(s) 354, 409, 580, 798, 1221
Hpy99I CGWCG 1 cut(s) 1055
HpyAV CCTTC 2 cut(s) 1100, 1401
HpyCH4III ACNGT 4 cut(s) 395, 814, 1168, 1338
HpyCH4IV ACGT 2 cut(s) 636, 1145
HpyCH4V TGCA 5 cut(s) 452, 710, 733, 810, 997
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 480
HpyF3I CTNAG 3 cut(s) 413, 936, 1184
HpySE526I ACGT 2 cut(s) 636, 1145
Ksp22I TGATCA 2 cut(s) 217, 541
KspAI GTTAAC 1 cut(s) 409
Kzo9I GATC 6 cut(s) 65, 167, 217, 312, 541, 822
LmnI GCTCC 3 cut(s) 425, 869, 1367
LweI GCATC 6 cut(s) 601, 697, 719, 775, 797, 1374
MaeI CTAG 1 cut(s) 359
MaeII ACGT 2 cut(s) 636, 1145
MalI GATC 6 cut(s) 67, 169, 219, 314, 543, 824
MboI GATC 6 cut(s) 65, 167, 217, 312, 541, 822
MboII GAAGA 5 cut(s) 322, 763, 923, 1332, 1427
MfeI CAATTG 1 cut(s) 801
MflI RGATCY 2 cut(s) 65, 312
MhlI GDGCHC 2 cut(s) 421, 1077
MluCI AATT 9 cut(s) 122, 155, 293, 734, 801, 899, 1086, 1289, 1348
MlyI GAGTC 1 cut(s) 1176
MmeI TCCRAC 1 cut(s) 1277
Mph1103I ATGCAT 1 cut(s) 712
MroXI GAANNNNTTC 1 cut(s) 930
MseI TTAA 6 cut(s) 408, 657, 816, 1173, 1212, 1293
MslI CAYNNNNRTG 3 cut(s) 78, 203, 840
MspI CCGG 2 cut(s) 150, 714
MspR9I CCNGG 1 cut(s) 1121
MunI CAATTG 1 cut(s) 801
MvaI CCWGG 1 cut(s) 1121
MwoI GCNNNNNNNGC 2 cut(s) 425, 480
NcoI CCATGG 3 cut(s) 175, 610, 1330
NdeI CATATG 1 cut(s) 430
NdeII GATC 6 cut(s) 65, 167, 217, 312, 541, 822
NheI GCTAGC 1 cut(s) 358
NlaIV GGNNCC 3 cut(s) 28, 67, 1328
NmuCI GTSAC 3 cut(s) 82, 344, 503
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 1 cut(s) 845
PagI TCATGA 1 cut(s) 1396
PcsI WCGNNNNNNNCGW 1 cut(s) 1059
PdmI GAANNNNTTC 1 cut(s) 930
PfeI GAWTC 4 cut(s) 17, 289, 526, 1064
PflMI CCANNNNNTGG 1 cut(s) 13
PfoI TCCNGGA 1 cut(s) 1119
PkrI GCNGC 1 cut(s) 1096
PleI GAGTC 1 cut(s) 1176
PpsI GAGTC 1 cut(s) 1176
Ppu21I YACGTR 1 cut(s) 637
PsiI TTATAA 1 cut(s) 1347
Psp124BI GAGCTC 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 1119
PspEI GGTNACC 1 cut(s) 953
PspGI CCWGG 1 cut(s) 1119
PspN4I GGNNCC 3 cut(s) 28, 67, 1328
PspPI GGNCC 2 cut(s) 614, 1079
PsuI RGATCY 2 cut(s) 65, 312
RsaI GTAC 5 cut(s) 99, 109, 639, 1101, 1195
RsaNI GTAC 5 cut(s) 98, 108, 638, 1100, 1194
RseI CAYNNNNRTG 3 cut(s) 78, 203, 840
SacI GAGCTC 1 cut(s) 421
SaqAI TTAA 6 cut(s) 408, 657, 816, 1173, 1212, 1293
SatI GCNGC 1 cut(s) 1095
Sau3AI GATC 6 cut(s) 65, 167, 217, 312, 541, 822
Sau96I GGNCC 2 cut(s) 614, 1079
ScaI AGTACT 1 cut(s) 1195
SchI GAGTC 1 cut(s) 1176
ScrFI CCNGG 1 cut(s) 1121
SduI GDGCHC 2 cut(s) 421, 1077
SfaNI GCATC 6 cut(s) 601, 697, 719, 775, 797, 1374
SinI GGWCC 1 cut(s) 614
SmiMI CAYNNNNRTG 3 cut(s) 78, 203, 840
SmlI CTYRAG 2 cut(s) 641, 1298
SmoI CTYRAG 2 cut(s) 641, 1298
SnaBI TACGTA 1 cut(s) 637
Sse9I AATT 9 cut(s) 122, 155, 293, 734, 801, 899, 1086, 1289, 1348
SsiI CCGC 3 cut(s) 1024, 1095, 1443
SspI AATATT 1 cut(s) 338
SspMI CTAG 1 cut(s) 359
SstI GAGCTC 1 cut(s) 421
StyD4I CCNGG 1 cut(s) 1119
StyI CCWWGG 5 cut(s) 175, 610, 979, 1306, 1330
TaaI ACNGT 4 cut(s) 395, 814, 1168, 1338
TaiI ACGT 2 cut(s) 639, 1148
TaqI TCGA 6 cut(s) 223, 249, 570, 666, 1038, 1062
TasI AATT 9 cut(s) 122, 155, 293, 734, 801, 899, 1086, 1289, 1348
TatI WGTACW 2 cut(s) 1099, 1193
TauI GCSGC 1 cut(s) 1097
TfiI GAWTC 4 cut(s) 17, 289, 526, 1064
Tru1I TTAA 6 cut(s) 408, 657, 816, 1173, 1212, 1293
Tru9I TTAA 6 cut(s) 408, 657, 816, 1173, 1212, 1293
TscAI CASTG 4 cut(s) 735, 817, 1171, 1416
TseFI GTSAC 3 cut(s) 82, 344, 503
Tsp45I GTSAC 3 cut(s) 82, 344, 503
TspDTI ATGAA 7 cut(s) 246, 348, 501, 518, 764, 824, 1346
TspGWI ACGGA 1 cut(s) 1138
TspRI CASTG 4 cut(s) 735, 817, 1171, 1416
Van91I CCANNNNNTGG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 614
XapI RAATTY 2 cut(s) 122, 1289
XceI RCATGY 1 cut(s) 845
XmnI GAANNNNTTC 1 cut(s) 930
XspI CTAG 1 cut(s) 359
ZrmI AGTACT 1 cut(s) 1195
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.