AT5G38540

Jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000646
Physical Location & Seq
Reverse (-)
15426556 .. 15430794
4239 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38540.1

Sequence Viewer

Length: 1407 bp
ATGATCATAAAGTTGGGAGCGAAAGGAATCAAGTTAGATGAACGTCGTCTGTGGGATGATGGTTCTGACCATGATGACGTAACAAAGATATACGTAAAAGGGGGTCCCCAAGGCATAGGATCCTTTTATTTCAACTATGTGAAGAGTGGAAATCCAAAAGATGGATCAATCCATGGTTTCTTTAACTATGGTTTCACACAAACGTTTGAGATAAACCATCTACAAGATGAACATCTTGAATCTGTTGACGCTTACTACAACAAAAAGTCTTATGGTTTGCAAGCAATTCAATTCAAAACCAATTTCAGGACCTCTGAACTGATGGGGTATAGTTATGAGTGTACCATGTTTACGCTAGCCGTCAAAGGAAAGAAGATCATTGGGTTTCATGGATCTGATAATGTACATATATACTCTCTTGGAGCTTACTTCACTTCCATTACTCCTACGAGATTGGAAGTGAAAGGTGGTATGGGAGGCAAGAAGTGGGAGGATGGATTCGACCATGACAATGTATCAAAGATCCAAGTGCTAGGTGGTTTTGAAGGCATACTGTACATCAAAGTTGACTATATCAAGAATGGAAAACTAGAAACTGGATTAATCCATGGTGACTCTGGTGGTGATGGTTTTTTACAGAAGATGGAGATTAACCAGTCAAAGAACGAATATCTAGTATATGTTGAAGGTTACTACGATGATGCTTCTGAAACCATTCAAGGGCTTCATTTCCAAACTAACCTCAACAATCCTGTTATGATGGGGTATAAAAAGGGCAGGAAGTTTTTACTTGCATCCAATGGAAATAAGATCATTGGGTTTCATGGATATGCCGACAAAAGTCTAAACTCTCTTGGAGCATATTTCAGTAGGGCCACTCCTAACAAATTGGAATGCCAAGGTGATTGTAGAGGAATGTCTTGGGATGATGGTTGTAATTATGACGGAGTTAGAAAGGTGTTCGTCGATGGTATAGGTAACGAAATATATACTGTCAGGTTTGAGTACGATAATGGCGGAAAAGTGGAAAAGACACCGTATCGACGTGATGTTAAAAATGAGAAGGAGTTTGTGCTTGATTATCCAAATGAATTTATCACGTCTGTGGAGGGGACCTTAGCAGCTCCGAAAAGTGTTAACATCACGTGGATTACGTCATTGACATTCAAAACATCAAAAAAGAGAAGCTCTCCAACATTTGGATCAGCTAGTAGTAGAAAATTTGTGCTGGAGAAGAATGGTAGTCCTCTTGTTGGGTTCCATGGATATAATAGTGTTGGGAATACTCTTAATTCTCTTGGAGCATATTATCGCCCGATTCCTCCTACTCCTGATGTGGAGAAACTAAAAGCACAAGGTGGTGTGGAGGAGCTTCTTGGGATGATGGTGGTACTTTCAACAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin TIR

Protein Analysis

468

Amino Acids

52.2

Weight (kDa)

7.63

Isoelectric Point (pI)

24.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 16 - 143 8.2e-25 Jacalin-like lectin domain
Jacalin PF01419 153 - 288 1.2e-28 Jacalin-like lectin domain
Jacalin PF01419 298 - 436 1.8e-28 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 161, 1199
AciI CCGC 1 cut(s) 1017
AclI AACGTT 1 cut(s) 203
AclWI GGATC 6 cut(s) 114, 127, 172, 400, 517, 1210
AcsI RAATTY 2 cut(s) 1091, 1220
AcvI CACGTG 1 cut(s) 1146
AdeI CACNNNGTG 1 cut(s) 1358
AfaI GTAC 5 cut(s) 343, 405, 557, 1007, 1392
AfiI CCNNNNNNNGG 5 cut(s) 161, 306, 720, 1199, 1253
AgsI TTSAA 9 cut(s) 133, 239, 290, 295, 545, 686, 719, 1168, 1398
AjiI CACGTC 2 cut(s) 1046, 1101
AleI CACNNNNGTG 1 cut(s) 1103
AluBI AGCT 5 cut(s) 425, 1124, 1188, 1208, 1372
AluI AGCT 5 cut(s) 425, 1124, 1188, 1208, 1372
AlwI GGATC 6 cut(s) 114, 127, 172, 400, 517, 1210
AoxI GGCC 1 cut(s) 873
ApeKI GCWGC 1 cut(s) 1121
ApoI RAATTY 2 cut(s) 1091, 1220
AseI ATTAAT 1 cut(s) 602
Asp700I GAANNNNTTC 1 cut(s) 714
AspS9I GGNCC 4 cut(s) 104, 309, 873, 1113
AsuHPI GGTGA 3 cut(s) 623, 635, 914
AsuNHI GCTAGC 1 cut(s) 355
AvaII GGWCC 3 cut(s) 104, 309, 1113
BamHI GGATCC 1 cut(s) 119
BbrPI CACGTG 1 cut(s) 1146
BbvI GCAGC 1 cut(s) 1133
BceAI ACGGC 1 cut(s) 344
BclI TGATCA 1 cut(s) 3
BfaI CTAG 5 cut(s) 356, 533, 590, 674, 1209
BisI GCNGC 1 cut(s) 1122
BlsI GCNGC 1 cut(s) 1123
Bme18I GGWCC 3 cut(s) 104, 309, 1113
BmgBI CACGTC 2 cut(s) 1046, 1101
BmgT120I GGNCC 4 cut(s) 104, 309, 873, 1113
BmiI GGNNCC 5 cut(s) 105, 106, 121, 1114, 1259
BmsI GCATC 2 cut(s) 691, 803
BmtI GCTAGC 1 cut(s) 359
BoxI GACNNNNGTC 1 cut(s) 840
BplI GAGNNNNNCTC 2 cut(s) 1174, 1206
BpmI CTGGAG 1 cut(s) 1250
Bpu10I CCTNAGC 1 cut(s) 1117
BsaAI YACGTR 2 cut(s) 94, 1146
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 5 cut(s) 109, 172, 607, 898, 1261
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 306, 720, 1199, 1253
Bse1I ACTGG 2 cut(s) 601, 655
Bse8I GATNNNNATC 1 cut(s) 231
BseDI CCNNGG 5 cut(s) 109, 172, 607, 898, 1261
BseGI GGATG 5 cut(s) 61, 499, 794, 931, 1386
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 5 cut(s) 161, 306, 720, 1199, 1253
BseNI ACTGG 2 cut(s) 601, 655
BseRI GAGGAG 1 cut(s) 1382
BseXI GCAGC 1 cut(s) 1133
BshFI GGCC 1 cut(s) 875
BslFI GGGAC 2 cut(s) 90, 1126
BslI CCNNNNNNNGG 5 cut(s) 161, 306, 720, 1199, 1253
BsmFI GGGAC 2 cut(s) 90, 1126
BsmI GAATGC 1 cut(s) 899
BsnI GGCC 1 cut(s) 875
Bsp1407I TGTACA 2 cut(s) 403, 555
Bsp143I GATC 8 cut(s) 3, 119, 164, 375, 392, 522, 810, 1202
Bsp19I CCATGG 3 cut(s) 172, 607, 1261
BspACI CCGC 1 cut(s) 1017
BspANI GGCC 1 cut(s) 875
BspLI GGNNCC 5 cut(s) 105, 106, 121, 1114, 1259
BspOI GCTAGC 1 cut(s) 359
BspPI GGATC 6 cut(s) 114, 127, 172, 400, 517, 1210
BsrGI TGTACA 2 cut(s) 403, 555
BsrI ACTGG 2 cut(s) 601, 655
BssECI CCNNGG 5 cut(s) 109, 172, 607, 898, 1261
BssMI GATC 8 cut(s) 3, 119, 164, 375, 392, 522, 810, 1202
BssT1I CCWWGG 5 cut(s) 109, 172, 607, 898, 1261
Bst4CI ACNGT 4 cut(s) 555, 994, 1038, 1402
Bst6I CTCTTC 1 cut(s) 137
BstAUI TGTACA 2 cut(s) 403, 555
BstBAI YACGTR 2 cut(s) 94, 1146
BstC8I GCNNGC 2 cut(s) 282, 357
BstDEI CTNAG 1 cut(s) 1117
BstDSI CCRYGG 3 cut(s) 172, 607, 1261
BstF5I GGATG 5 cut(s) 61, 499, 794, 931, 1386
BstKTI GATC 8 cut(s) 6, 122, 167, 378, 395, 525, 813, 1205
BstMBI GATC 8 cut(s) 3, 119, 164, 375, 392, 522, 810, 1202
BstPAI GACNNNNGTC 1 cut(s) 840
BstSNI TACGTA 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 1133
BstX2I RGATCY 3 cut(s) 119, 392, 522
BstYI RGATCY 3 cut(s) 119, 392, 522
BsuRI GGCC 1 cut(s) 875
BtgI CCRYGG 3 cut(s) 172, 607, 1261
BtrI CACGTC 2 cut(s) 1046, 1101
BtsCI GGATG 5 cut(s) 61, 499, 794, 931, 1386
BtsIMutI CAGTG 1 cut(s) 1407
Cac8I GCNNGC 2 cut(s) 282, 357
Cfr13I GGNCC 4 cut(s) 104, 309, 873, 1113
CseI GACGC 1 cut(s) 257
Csp6I GTAC 5 cut(s) 342, 404, 556, 1006, 1391
CviAII CATG 8 cut(s) 71, 173, 346, 389, 506, 608, 824, 1262
CviJI RGCY 8 cut(s) 359, 425, 724, 875, 1124, 1188, 1208, 1372
CviKI_1 RGCY 8 cut(s) 359, 425, 724, 875, 1124, 1188, 1208, 1372
CviQI GTAC 5 cut(s) 342, 404, 556, 1006, 1391
DdeI CTNAG 1 cut(s) 1117
DpnI GATC 8 cut(s) 5, 121, 166, 377, 394, 524, 812, 1204
DpnII GATC 8 cut(s) 3, 119, 164, 375, 392, 522, 810, 1202
DraIII CACNNNGTG 1 cut(s) 1358
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
EciI GGCGGA 1 cut(s) 1032
Eco105I TACGTA 1 cut(s) 94
Eco130I CCWWGG 5 cut(s) 109, 172, 607, 898, 1261
Eco47I GGWCC 3 cut(s) 104, 309, 1113
Eco72I CACGTG 1 cut(s) 1146
EcoO109I RGGNCCY 3 cut(s) 104, 309, 1113
EcoT14I CCWWGG 5 cut(s) 109, 172, 607, 898, 1261
ErhI CCWWGG 5 cut(s) 109, 172, 607, 898, 1261
FaeI CATG 8 cut(s) 74, 176, 349, 392, 509, 611, 827, 1265
FaqI GGGAC 2 cut(s) 90, 1126
FatI CATG 8 cut(s) 70, 172, 345, 388, 505, 607, 823, 1261
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 1122
FokI GGATG 5 cut(s) 68, 506, 781, 938, 1393
Fsp4HI GCNGC 1 cut(s) 1122
FspBI CTAG 5 cut(s) 356, 533, 590, 674, 1209
GluI GCNGC 1 cut(s) 1122
GsuI CTGGAG 1 cut(s) 1250
HaeIII GGCC 1 cut(s) 875
HgaI GACGC 1 cut(s) 257
Hin1II CATG 8 cut(s) 74, 176, 349, 392, 509, 611, 827, 1265
HincII GTYRAC 3 cut(s) 247, 568, 1138
HindII GTYRAC 3 cut(s) 247, 568, 1138
HinfI GANTC 5 cut(s) 27, 239, 498, 614, 1318
HpaI GTTAAC 1 cut(s) 1138
HphI GGTGA 3 cut(s) 623, 635, 914
Hpy166II GTNNAC 5 cut(s) 247, 342, 351, 568, 1138
Hpy188I TCNGA 5 cut(s) 67, 316, 397, 709, 1128
Hpy188III TCNNGA 4 cut(s) 236, 307, 577, 1331
Hpy8I GTNNAC 5 cut(s) 247, 342, 351, 568, 1138
Hpy99I CGWCG 3 cut(s) 48, 968, 1047
HpyAV CCTTC 3 cut(s) 539, 680, 1057
HpyCH4III ACNGT 4 cut(s) 555, 994, 1038, 1402
HpyCH4IV ACGT 8 cut(s) 43, 78, 93, 203, 1045, 1100, 1145, 1154
HpyCH4V TGCA 2 cut(s) 280, 794
HpyF3I CTNAG 1 cut(s) 1117
HpySE526I ACGT 8 cut(s) 43, 78, 93, 203, 1045, 1100, 1145, 1154
Hsp92II CATG 8 cut(s) 74, 176, 349, 392, 509, 611, 827, 1265
KflI GGGWCCC 1 cut(s) 104
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 1 cut(s) 1138
Kzo9I GATC 8 cut(s) 3, 119, 164, 375, 392, 522, 810, 1202
LmnI GCTCC 6 cut(s) 17, 422, 857, 1129, 1301, 1369
LpnPI CCDG 9 cut(s) 292, 582, 603, 668, 763, 765, 982, 1214, 1344
Lsp1109I GCAGC 1 cut(s) 1133
LweI GCATC 2 cut(s) 691, 803
MaeI CTAG 5 cut(s) 356, 533, 590, 674, 1209
MaeII ACGT 8 cut(s) 43, 78, 93, 203, 1045, 1100, 1145, 1154
MaeIII GTNAC 4 cut(s) 79, 611, 689, 977
MalI GATC 8 cut(s) 5, 121, 166, 377, 394, 524, 812, 1204
MboI GATC 8 cut(s) 3, 119, 164, 375, 392, 522, 810, 1202
MboII GAAGA 4 cut(s) 154, 385, 652, 1246
MflI RGATCY 3 cut(s) 119, 392, 522
MluCI AATT 8 cut(s) 285, 290, 301, 887, 937, 1091, 1220, 1291
MlyI GAGTC 1 cut(s) 608
MmeI TCCRAC 1 cut(s) 1217
MnlI CCTC 9 cut(s) 322, 470, 484, 752, 905, 1102, 1257, 1332, 1360
MroXI GAANNNNTTC 1 cut(s) 714
MseI TTAA 6 cut(s) 183, 602, 651, 1053, 1137, 1290
MslI CAYNNNNRTG 3 cut(s) 510, 828, 1103
Mva1269I GAATGC 1 cut(s) 899
NcoI CCATGG 3 cut(s) 172, 607, 1261
NdeII GATC 8 cut(s) 3, 119, 164, 375, 392, 522, 810, 1202
NheI GCTAGC 1 cut(s) 355
NlaIII CATG 8 cut(s) 74, 176, 349, 392, 509, 611, 827, 1265
NlaIV GGNNCC 5 cut(s) 105, 106, 121, 1114, 1259
NmuCI GTSAC 1 cut(s) 611
OliI CACNNNNGTG 1 cut(s) 1103
PcsI WCGNNNNNNNCGW 1 cut(s) 1151
PctI GAATGC 1 cut(s) 899
PdmI GAANNNNTTC 1 cut(s) 714
PfeI GAWTC 4 cut(s) 27, 239, 498, 1318
PflMI CCANNNNNTGG 2 cut(s) 161, 1199
PkrI GCNGC 1 cut(s) 1123
PleI GAGTC 1 cut(s) 608
PmaCI CACGTG 1 cut(s) 1146
PmlI CACGTG 1 cut(s) 1146
PpsI GAGTC 1 cut(s) 608
Ppu21I YACGTR 2 cut(s) 94, 1146
PpuMI RGGWCCY 3 cut(s) 104, 309, 1113
PshAI GACNNNNGTC 1 cut(s) 840
PshBI ATTAAT 1 cut(s) 602
Psp1406I AACGTT 1 cut(s) 203
Psp5II RGGWCCY 3 cut(s) 104, 309, 1113
PspCI CACGTG 1 cut(s) 1146
PspN4I GGNNCC 5 cut(s) 105, 106, 121, 1114, 1259
PspPI GGNCC 4 cut(s) 104, 309, 873, 1113
PspPPI RGGWCCY 3 cut(s) 104, 309, 1113
PsuI RGATCY 3 cut(s) 119, 392, 522
RsaI GTAC 5 cut(s) 343, 405, 557, 1007, 1392
RsaNI GTAC 5 cut(s) 342, 404, 556, 1006, 1391
RseI CAYNNNNRTG 3 cut(s) 510, 828, 1103
SaqAI TTAA 6 cut(s) 183, 602, 651, 1053, 1137, 1290
SatI GCNGC 1 cut(s) 1122
Sau3AI GATC 8 cut(s) 3, 119, 164, 375, 392, 522, 810, 1202
Sau96I GGNCC 4 cut(s) 104, 309, 873, 1113
SchI GAGTC 1 cut(s) 608
SfaNI GCATC 2 cut(s) 691, 803
SinI GGWCC 3 cut(s) 104, 309, 1113
SmiMI CAYNNNNRTG 3 cut(s) 510, 828, 1103
SnaBI TACGTA 1 cut(s) 94
Sse9I AATT 8 cut(s) 285, 290, 301, 887, 937, 1091, 1220, 1291
SsiI CCGC 1 cut(s) 1017
SspMI CTAG 5 cut(s) 356, 533, 590, 674, 1209
StyI CCWWGG 5 cut(s) 109, 172, 607, 898, 1261
TaaI ACNGT 4 cut(s) 555, 994, 1038, 1402
TaiI ACGT 8 cut(s) 46, 81, 96, 206, 1048, 1103, 1148, 1157
TaqI TCGA 3 cut(s) 501, 966, 1042
TasI AATT 8 cut(s) 285, 290, 301, 887, 937, 1091, 1220, 1291
TatI WGTACW 2 cut(s) 403, 555
TfiI GAWTC 4 cut(s) 27, 239, 498, 1318
Tru1I TTAA 6 cut(s) 183, 602, 651, 1053, 1137, 1290
Tru9I TTAA 6 cut(s) 183, 602, 651, 1053, 1137, 1290
TscAI CASTG 1 cut(s) 1407
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 1 cut(s) 1121
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 6 cut(s) 54, 243, 377, 716, 812, 1104
TspGWI ACGGA 1 cut(s) 960
TspRI CASTG 1 cut(s) 1407
Van91I CCANNNNNTGG 2 cut(s) 161, 1199
VpaK11BI GGWCC 3 cut(s) 104, 309, 1113
VspI ATTAAT 1 cut(s) 602
XapI RAATTY 2 cut(s) 1091, 1220
XcmI CCANNNNNNNNNTGG 2 cut(s) 533, 614
XmnI GAANNNNTTC 1 cut(s) 714
XspI CTAG 5 cut(s) 356, 533, 590, 674, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.