AT5G38550

jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000646
Physical Location & Seq
Reverse (-)
15432781 .. 15435851
3071 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38550.1

Sequence Viewer

Length: 1785 bp
ATGATCCAAAAGTTGGGAGCGAAAGGAATCAAGTCAGATGAACGTAATCAGCGGGAGTGGGATGATGGATCTGAACATGATGATGTAACAAAGATATACGTACGAGGTGGTCGTGAAGGAATAAGATCCATTTATTTCAACTATGTGAAGAATGGAAAACCCAAAGATGGATCAATCCATGGTTACTTTGACTCTGGTTTCACACAAACGTTTGAGATTAACCATCTACGAGGTGAATATCTTGAATCTGTTGACGCTTACTACGACAAAAAGTCCTACGGTATGCAAGCAATTCAATTCAAAACTAACTTCAGGACTTCTGAACTGATGGGGTATAGTTATGAGTGTACTATGTTTACGCTAGCCGTCCAAGGAAAGAAGATCATTGGATTTCATGGATCTAATTATGTACATATATTATCTCTTGGAGCTTACTTCATTTCCATTGCTCCTACGAGATTGGAAGTGAAAGGTAGTAAGGGAAGCAAGAAGTGGGACGATGGATTTGACCATGAAAATGTATCAAAGATCGAGGTACTAGGTGGTTTTGAAGGCATACTGTACATCAAAGTTGACTATATCAAGAATGGAAAACTAGAAACTGGATTAGTCCATGGTCACTCTGGTGGTGATGGTTTTTTACAGAAGATGGAGATTAACCAGTCAAAGAACGAATATCTAGTATATGTTGAAGGTTACTACGATGATGCTTCTGAAACCATTCAAGGGCTTCATTTCCAAACTAACCTCAACAATCCTGTTATGATGGGGTATAAAAAGGGCAGGAAGTTTTTACTTGCATCCAATGGAAATAAGATCATTGGGTTTCATGGATATGCCGACAAAAGCCTAAACTCTCTTGGAGCATATTTCAGTACGACCACTCCTAATAAACTGGAATGCCAAGGTGATCGTAAAGGACTGCCTTGGGATGATGGTTGTAATTATGACGGCGTAAAAAAGGTGTATGTCGATAGTATAAGTGATATAGATAGTGTCAGGTTTGAGTACGATAATGGCGGAAAAGTGGAAAAGACTCCGTACCGGCGTGATGTTACAAATGAGAAGGAGTTTGTGCTTGACTATCCAAATGAGTTTATCACGTCTGTGGAGGGGACCTTAGCAACTCCGACTAATTTTGACATTACGTGGATTCTCTCACTGACATTCAAAACATCAAAAGGGAGAACCTCTCCAACATTTGGATCATCGTCTCCTGGTAGAAAATTTGTGCTGGAGAAGAATGGTAGCGCTCTTGTTGGGTTCCATGGATATATTGGTCCTGGTTATAATATTAAAGCTCTTGGAGCATATTATCGCCCGATTCCTCCTACTCCTGATGTGAAAAGACTAGAAGCACAAGGTGGTGATGGAGGAGCTTCTTGGGATGATGGTGGTACTTTCAACAGTGTTAGAAAGATCTACATTGGACTAGGCAAAAACGTTGTAGGCTTTGTCAAGTTTTTGTACTACAAAAACGCTCGTGTTGTCATCGGAGATGATCATGGCAACAAGACCCTTTCATCTGATCTCCTAGAGTTCTTGTTGGATCCGTTTGAACATATCATATCAGTGGAGGGTACTTATGATGATACATCTGGAGGTATAACCATGCTTAGGTTCGAGACCAACTTACAAAAATCTCCATACTTTGGATTTGGTACAACATCAAACTTCTTGCTTCACAAGGATAATCACCAGATCGTTGGATTCCATGGAAAATCCAGTAACATGCTTCATCAACTTGGGGTCCACGTTATACCCAACGGTTTTAAATTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

594

Amino Acids

66.44

Weight (kDa)

7.02

Isoelectric Point (pI)

19.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 18 - 145 9.7e-27 Jacalin-like lectin domain
Jacalin PF01419 155 - 290 2.2e-27 Jacalin-like lectin domain
Jacalin PF01419 300 - 438 5.9e-29 Jacalin-like lectin domain
Jacalin PF01419 452 - 585 3.4e-32 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1290
AccB7I CCANNNNNTGG 3 cut(s) 13, 1202, 1652
AciI CCGC 2 cut(s) 52, 1020
AclI AACGTT 2 cut(s) 209, 1443
AclWI GGATC 7 cut(s) 76, 120, 178, 406, 1213, 1544, 1557
AcsI RAATTY 2 cut(s) 1226, 1775
AcuI CTGAAG 1 cut(s) 295
AdeI CACNNNGTG 1 cut(s) 1364
AfeI AGCGCT 1 cut(s) 1252
AfiI CCNNNNNNNGG 6 cut(s) 13, 167, 726, 1202, 1617, 1652
AhdI GACNNNNNGTC 1 cut(s) 271
AjiI CACGTC 1 cut(s) 1104
AjnI CCWGG 2 cut(s) 1216, 1282
AleI CACNNNNGTG 2 cut(s) 624, 1106
AluBI AGCT 3 cut(s) 431, 1301, 1379
AluI AGCT 3 cut(s) 431, 1301, 1379
Alw26I GTCTC 2 cut(s) 1218, 1619
AlwI GGATC 7 cut(s) 76, 120, 178, 406, 1213, 1544, 1557
Aor51HI AGCGCT 1 cut(s) 1252
ApoI RAATTY 2 cut(s) 1226, 1775
ArsI GACNNNNNNTTYG 2 cut(s) 488, 520
Asp700I GAANNNNTTC 1 cut(s) 720
AspLEI GCGC 1 cut(s) 1253
AspS9I GGNCC 3 cut(s) 1116, 1280, 1750
AsuHPI GGTGA 5 cut(s) 245, 641, 920, 1379, 1688
AsuNHI GCTAGC 1 cut(s) 361
AvaII GGWCC 3 cut(s) 1116, 1280, 1750
BamHI GGATCC 1 cut(s) 1549
BauI CACGAG 1 cut(s) 1482
BceAI ACGGC 2 cut(s) 350, 967
BciT130I CCWGG 2 cut(s) 1218, 1284
BclI TGATCA 1 cut(s) 1501
BcoDI GTCTC 2 cut(s) 1218, 1619
BfaI CTAG 7 cut(s) 362, 539, 596, 680, 1352, 1433, 1535
BfoI RGCGCY 1 cut(s) 1254
BglII AGATCT 1 cut(s) 1419
Bme1390I CCNGG 2 cut(s) 1218, 1284
Bme18I GGWCC 3 cut(s) 1116, 1280, 1750
BmeRI GACNNNNNGTC 1 cut(s) 271
BmgBI CACGTC 1 cut(s) 1104
BmgT120I GGNCC 3 cut(s) 1116, 1280, 1750
BmiI GGNNCC 4 cut(s) 1117, 1265, 1551, 1751
BmrFI CCNGG 2 cut(s) 1218, 1284
BmsI GCATC 2 cut(s) 697, 809
BmtI GCTAGC 1 cut(s) 365
BplI GAGNNNNNCTC 2 cut(s) 1177, 1209
BpmI CTGGAG 2 cut(s) 1256, 1620
Bpu10I CCTNAGC 2 cut(s) 1120, 1616
BsaAI YACGTR 2 cut(s) 100, 1149
BsaI GGTCTC 1 cut(s) 1619
BsaJI CCNNGG 7 cut(s) 178, 370, 613, 904, 926, 1267, 1714
BsaXI ACNNNNNCTCC 2 cut(s) 868, 898
Bsc4I CCNNNNNNNGG 6 cut(s) 13, 167, 726, 1202, 1617, 1652
Bse118I RCCGGY 1 cut(s) 1044
Bse1I ACTGG 4 cut(s) 607, 661, 900, 1725
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 2 cut(s) 1218, 1284
BseDI CCNNGG 7 cut(s) 178, 370, 613, 904, 926, 1267, 1714
BseGI GGATG 4 cut(s) 67, 800, 937, 1393
BseLI CCNNNNNNNGG 6 cut(s) 13, 167, 726, 1202, 1617, 1652
BseMI GCAATG 1 cut(s) 444
BseNI ACTGG 4 cut(s) 607, 661, 900, 1725
BseRI GAGGAG 1 cut(s) 1389
BsiSI CCGG 1 cut(s) 1045
BsiWI CGTACG 1 cut(s) 100
BslFI GGGAC 2 cut(s) 509, 1129
BslI CCNNNNNNNGG 6 cut(s) 13, 167, 726, 1202, 1617, 1652
BsmAI GTCTC 2 cut(s) 1218, 1619
BsmBI CGTCTC 1 cut(s) 1218
BsmFI GGGAC 2 cut(s) 509, 1129
BsmI GAATGC 1 cut(s) 905
Bso31I GGTCTC 1 cut(s) 1619
Bsp1407I TGTACA 2 cut(s) 409, 561
Bsp19I CCATGG 4 cut(s) 178, 613, 1267, 1714
BspACI CCGC 2 cut(s) 52, 1020
BspLI GGNNCC 4 cut(s) 1117, 1265, 1551, 1751
BspOI GCTAGC 1 cut(s) 365
BspPI GGATC 7 cut(s) 76, 120, 178, 406, 1213, 1544, 1557
BspTNI GGTCTC 1 cut(s) 1619
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 1044
BsrGI TGTACA 2 cut(s) 409, 561
BsrI ACTGG 4 cut(s) 607, 661, 900, 1725
BssAI RCCGGY 1 cut(s) 1044
BssECI CCNNGG 7 cut(s) 178, 370, 613, 904, 926, 1267, 1714
BssSI CACGAG 1 cut(s) 1482
BssT1I CCWWGG 7 cut(s) 178, 370, 613, 904, 926, 1267, 1714
Bst2BI CACGAG 1 cut(s) 1482
Bst2UI CCWGG 2 cut(s) 1218, 1284
Bst4CI ACNGT 4 cut(s) 281, 561, 1409, 1769
BstAUI TGTACA 2 cut(s) 409, 561
BstBAI YACGTR 2 cut(s) 100, 1149
BstC8I GCNNGC 2 cut(s) 288, 363
BstDEI CTNAG 2 cut(s) 1120, 1616
BstDSI CCRYGG 4 cut(s) 178, 613, 1267, 1714
BstF5I GGATG 4 cut(s) 67, 800, 937, 1393
BstH2I RGCGCY 1 cut(s) 1254
BstHHI GCGC 1 cut(s) 1253
BstMAI GTCTC 2 cut(s) 1218, 1619
BstMWI GCNNNNNNNGC 1 cut(s) 1307
BstNI CCWGG 2 cut(s) 1218, 1284
BstNSI RCATGY 1 cut(s) 1735
BstSCI CCNGG 2 cut(s) 1216, 1282
BstSNI TACGTA 1 cut(s) 100
BstX2I RGATCY 5 cut(s) 68, 125, 398, 1419, 1549
BstXI CCANNNNNNTGG 1 cut(s) 1706
BstYI RGATCY 5 cut(s) 68, 125, 398, 1419, 1549
BtgI CCRYGG 4 cut(s) 178, 613, 1267, 1714
BtrI CACGTC 1 cut(s) 1104
BtsCI GGATG 4 cut(s) 67, 800, 937, 1393
BtsIMutI CAGTG 3 cut(s) 1160, 1414, 1578
Cac8I GCNNGC 2 cut(s) 288, 363
CfoI GCGC 1 cut(s) 1253
Cfr10I RCCGGY 1 cut(s) 1044
Cfr13I GGNCC 3 cut(s) 1116, 1280, 1750
CseI GACGC 1 cut(s) 263
CviJI RGCY 7 cut(s) 365, 431, 730, 849, 1301, 1379, 1452
CviKI_1 RGCY 7 cut(s) 365, 431, 730, 849, 1301, 1379, 1452
DdeI CTNAG 2 cut(s) 1120, 1616
DraI TTTAAA 1 cut(s) 1774
DraIII CACNNNGTG 1 cut(s) 1364
DriI GACNNNNNGTC 1 cut(s) 271
Eam1105I GACNNNNNGTC 1 cut(s) 271
EciI GGCGGA 1 cut(s) 1035
Eco105I TACGTA 1 cut(s) 100
Eco130I CCWWGG 7 cut(s) 178, 370, 613, 904, 926, 1267, 1714
Eco31I GGTCTC 1 cut(s) 1619
Eco47I GGWCC 3 cut(s) 1116, 1280, 1750
Eco47III AGCGCT 1 cut(s) 1252
Eco57I CTGAAG 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 1116
EcoRII CCWGG 2 cut(s) 1216, 1282
EcoT14I CCWWGG 7 cut(s) 178, 370, 613, 904, 926, 1267, 1714
ErhI CCWWGG 7 cut(s) 178, 370, 613, 904, 926, 1267, 1714
Esp3I CGTCTC 1 cut(s) 1218
FaqI GGGAC 2 cut(s) 509, 1129
FauI CCCGC 1 cut(s) 45
FbaI TGATCA 1 cut(s) 1501
FokI GGATG 4 cut(s) 74, 787, 944, 1400
FspBI CTAG 7 cut(s) 362, 539, 596, 680, 1352, 1433, 1535
GlaI GCGC 1 cut(s) 1252
GsuI CTGGAG 2 cut(s) 1256, 1620
HaeII RGCGCY 1 cut(s) 1254
HapII CCGG 1 cut(s) 1045
HgaI GACGC 1 cut(s) 263
HhaI GCGC 1 cut(s) 1253
Hin6I GCGC 1 cut(s) 1251
HinP1I GCGC 1 cut(s) 1251
HincII GTYRAC 2 cut(s) 253, 574
HindII GTYRAC 2 cut(s) 253, 574
HinfI GANTC 7 cut(s) 27, 191, 245, 1036, 1153, 1324, 1710
HpaII CCGG 1 cut(s) 1045
HphI GGTGA 5 cut(s) 245, 641, 920, 1379, 1688
Hpy166II GTNNAC 5 cut(s) 253, 348, 357, 574, 1753
Hpy188I TCNGA 7 cut(s) 37, 73, 322, 715, 1131, 1496, 1528
Hpy188III TCNNGA 7 cut(s) 113, 242, 313, 583, 1337, 1599, 1624
Hpy8I GTNNAC 5 cut(s) 253, 348, 357, 574, 1753
HpyAV CCTTC 4 cut(s) 110, 545, 686, 1060
HpyCH4III ACNGT 4 cut(s) 281, 561, 1409, 1769
HpyCH4IV ACGT 7 cut(s) 43, 99, 209, 1103, 1148, 1443, 1755
HpyCH4V TGCA 2 cut(s) 286, 800
HpyF10VI GCNNNNNNNGC 1 cut(s) 1307
HpyF3I CTNAG 2 cut(s) 1120, 1616
HpySE526I ACGT 7 cut(s) 43, 99, 209, 1103, 1148, 1443, 1755
HspAI GCGC 1 cut(s) 1251
Ksp22I TGATCA 1 cut(s) 1501
LmnI GCTCC 6 cut(s) 17, 428, 454, 863, 1307, 1376
LweI GCATC 2 cut(s) 697, 809
MaeI CTAG 7 cut(s) 362, 539, 596, 680, 1352, 1433, 1535
MaeII ACGT 7 cut(s) 43, 99, 209, 1103, 1148, 1443, 1755
MaeIII GTNAC 6 cut(s) 85, 182, 617, 695, 1054, 1727
MboII GAAGA 4 cut(s) 160, 391, 658, 1252
MflI RGATCY 5 cut(s) 68, 125, 398, 1419, 1549
MluCI AATT 7 cut(s) 291, 296, 403, 943, 1135, 1226, 1775
MlyI GAGTC 2 cut(s) 185, 1030
MmeI TCCRAC 4 cut(s) 1154, 1220, 1527, 1687
MroXI GAANNNNTTC 1 cut(s) 720
MseI TTAA 5 cut(s) 219, 657, 1296, 1773, 1783
MslI CAYNNNNRTG 6 cut(s) 81, 516, 624, 834, 1106, 1571
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 1 cut(s) 1045
MspR9I CCNGG 2 cut(s) 1218, 1284
Mva1269I GAATGC 1 cut(s) 905
MvaI CCWGG 2 cut(s) 1218, 1284
MwoI GCNNNNNNNGC 1 cut(s) 1307
NcoI CCATGG 4 cut(s) 178, 613, 1267, 1714
NheI GCTAGC 1 cut(s) 361
NlaIV GGNNCC 4 cut(s) 1117, 1265, 1551, 1751
NmuCI GTSAC 1 cut(s) 617
NspI RCATGY 1 cut(s) 1735
OliI CACNNNNGTG 2 cut(s) 624, 1106
PcsI WCGNNNNNNNCGW 2 cut(s) 109, 261
PctI GAATGC 1 cut(s) 905
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 5 cut(s) 27, 245, 1153, 1324, 1710
Pfl23II CGTACG 1 cut(s) 100
PflMI CCANNNNNTGG 3 cut(s) 13, 1202, 1652
PleI GAGTC 2 cut(s) 185, 1030
PpsI GAGTC 2 cut(s) 185, 1030
Ppu21I YACGTR 2 cut(s) 100, 1149
PpuMI RGGWCCY 1 cut(s) 1116
PsiI TTATAA 1 cut(s) 1290
Psp1406I AACGTT 2 cut(s) 209, 1443
Psp5II RGGWCCY 1 cut(s) 1116
Psp6I CCWGG 2 cut(s) 1216, 1282
PspGI CCWGG 2 cut(s) 1216, 1282
PspLI CGTACG 1 cut(s) 100
PspN4I GGNNCC 4 cut(s) 1117, 1265, 1551, 1751
PspPI GGNCC 3 cut(s) 1116, 1280, 1750
PspPPI RGGWCCY 1 cut(s) 1116
PsuI RGATCY 5 cut(s) 68, 125, 398, 1419, 1549
RseI CAYNNNNRTG 6 cut(s) 81, 516, 624, 834, 1106, 1571
SaqAI TTAA 5 cut(s) 219, 657, 1296, 1773, 1783
Sau96I GGNCC 3 cut(s) 1116, 1280, 1750
SchI GAGTC 2 cut(s) 185, 1030
ScrFI CCNGG 2 cut(s) 1218, 1284
SfaNI GCATC 2 cut(s) 697, 809
SinI GGWCC 3 cut(s) 1116, 1280, 1750
SmiMI CAYNNNNRTG 6 cut(s) 81, 516, 624, 834, 1106, 1571
SnaBI TACGTA 1 cut(s) 100
Sse9I AATT 7 cut(s) 291, 296, 403, 943, 1135, 1226, 1775
SsiI CCGC 2 cut(s) 52, 1020
SspI AATATT 1 cut(s) 1294
SspMI CTAG 7 cut(s) 362, 539, 596, 680, 1352, 1433, 1535
StyD4I CCNGG 2 cut(s) 1216, 1282
StyI CCWWGG 7 cut(s) 178, 370, 613, 904, 926, 1267, 1714
TaaI ACNGT 4 cut(s) 281, 561, 1409, 1769
TaiI ACGT 7 cut(s) 46, 102, 212, 1106, 1151, 1446, 1758
TaqI TCGA 3 cut(s) 531, 972, 1623
TasI AATT 7 cut(s) 291, 296, 403, 943, 1135, 1226, 1775
TatI WGTACW 4 cut(s) 347, 409, 561, 1467
TfiI GAWTC 5 cut(s) 27, 245, 1153, 1324, 1710
Tru1I TTAA 5 cut(s) 219, 657, 1296, 1773, 1783
Tru9I TTAA 5 cut(s) 219, 657, 1296, 1773, 1783
TscAI CASTG 3 cut(s) 1167, 1414, 1578
TseFI GTSAC 1 cut(s) 617
Tsp45I GTSAC 1 cut(s) 617
TspDTI ATGAA 8 cut(s) 54, 383, 427, 528, 722, 818, 1512, 1727
TspGWI ACGGA 2 cut(s) 1029, 1542
TspRI CASTG 3 cut(s) 1167, 1414, 1578
Van91I CCANNNNNTGG 3 cut(s) 13, 1202, 1652
VpaK11BI GGWCC 3 cut(s) 1116, 1280, 1750
XapI RAATTY 2 cut(s) 1226, 1775
XceI RCATGY 1 cut(s) 1735
XcmI CCANNNNNNNNNTGG 2 cut(s) 620, 1274
XmnI GAANNNNTTC 1 cut(s) 720
XspI CTAG 7 cut(s) 362, 539, 596, 680, 1352, 1433, 1535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.