AT1G52060

jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000646
Physical Location & Seq
Reverse (-)
19358800 .. 19360822
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52060.1

Sequence Viewer

Length: 945 bp
ATGATTTTCATCTATATATTTCTCTTTCTCTCCTCAGCCATTATAGATTCAAATGGGTTTGCAATGGCCCAAAAGTTGGAGGCTAAGGGTGGGAAAGGGGGCAAGGAATGGGATGATGGAGCCGGCCATGATAATGTAGCAAAAGTTTATATACGAGGTGGTCTTGAAGGCATACAATACATCAAATTTGATTATGTCAAAGATGGACAGTCTGTAGAGGGATCAATCCATGGTGTTTCGGGTAGTGGTTTCACACAAATGTTCGAGATTGACTATCAAAACGGTGAACATATTGTATCTGTTGACGGTTACTTTGACAAATCCGGTGTGATGCAAGCACTTGAATTCAAAACCAACCGGAAGACCTCTGAAGTGATTGGATACCCAAAGAGTAATACAAAGTTTTCACTTGGTGGGGTAAACGGAAAGATGATCAATGGCTTCCATGGATCCGCGGGGAAAGCCCTAAATTCCATTGGAGCGTATTTAACAAAAGTTCCTCCTACTAAGTCAGAACTCGTAGGTGGTTGGGGCGGCGACTACTGGGATGATGGTCCTAATTATGATGGCGTAAGAAAGGTGTATGTTACTTACATGAACACTTGTATAAGGAGTATCAACATCGACTACGAAAAAGACGGACAAGTTGTGACAAGTTCCCACGGGAACAAGGAGGGAGAGACAGAGGAGTTTGCGATAGACTATCCAAATGAATTTTTGATATCAGTGGAGGGTACGTACGACTCAATCCTATTCCCCGATCATTACGTTTTGGTCATTACGTCCTTGAGTTTCAAAACATCGAAAGGTAGAATATCTCCCACATATGGGGTTGTGTCTGGTACCAAATTTGTGCTGGAGAGCCAAGGTAATGCAATTGTCGGATTCTATGGGAGAAATGGTGGTGCTTTCGATGCTATTGGGGTTTATTTCTCTCCGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

314

Amino Acids

34.16

Weight (kDa)

5.31

Isoelectric Point (pI)

22.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 27 - 162 9.3e-35 Jacalin-like lectin domain
Jacalin PF01419 172 - 310 1e-37 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 842
AccB1I GGYRCC 1 cut(s) 842
AccB7I CCANNNNNTGG 1 cut(s) 76
AccII CGCG 1 cut(s) 455
AciI CCGC 3 cut(s) 453, 455, 534
AclWI GGATC 3 cut(s) 229, 444, 457
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 5 cut(s) 185, 344, 469, 713, 848
AcuI CTGAAG 1 cut(s) 390
AdeI CACNNNGTG 1 cut(s) 413
AfaI GTAC 3 cut(s) 736, 740, 844
AfiI CCNNNNNNNGG 3 cut(s) 76, 827, 828
AgsI TTSAA 5 cut(s) 51, 167, 344, 349, 796
Alw26I GTCTC 1 cut(s) 674
AlwI GGATC 3 cut(s) 229, 444, 457
AoxI GGCC 2 cut(s) 66, 124
ApoI RAATTY 5 cut(s) 185, 344, 469, 713, 848
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
Asp718I GGTACC 1 cut(s) 842
AspS9I GGNCC 2 cut(s) 67, 554
AsuHPI GGTGA 1 cut(s) 296
AvaII GGWCC 1 cut(s) 554
BamHI GGATCC 1 cut(s) 449
BanI GGYRCC 1 cut(s) 842
BbsI GAAGAC 1 cut(s) 368
BbvCI CCTCAGC 1 cut(s) 34
BccI CCATC 4 cut(s) 110, 197, 545, 560
BciVI GTATCC 1 cut(s) 374
BclI TGATCA 1 cut(s) 432
BcoDI GTCTC 1 cut(s) 674
BfmI CTRYAG 1 cut(s) 213
BfuI GTATCC 1 cut(s) 374
BisI GCNGC 1 cut(s) 535
BlsI GCNGC 1 cut(s) 536
Bme18I GGWCC 1 cut(s) 554
BmgT120I GGNCC 2 cut(s) 67, 554
BmiI GGNNCC 3 cut(s) 121, 451, 844
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 2 cut(s) 321, 904
BmuI ACTGGG 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 368
BpmI CTGGAG 1 cut(s) 878
Bpu10I CCTNAGC 2 cut(s) 34, 84
BpuEI CTTGAG 1 cut(s) 808
BsaAI YACGTR 1 cut(s) 738
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 5 cut(s) 229, 445, 453, 661, 865
BsaWI WCCGGW 2 cut(s) 323, 357
BsaXI ACNNNNNCTCC 4 cut(s) 722, 752, 886, 916
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 827, 828
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 548
Bse3DI GCAATG 1 cut(s) 69
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 5 cut(s) 229, 445, 453, 661, 865
BseGI GGATG 2 cut(s) 118, 553
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 3 cut(s) 76, 827, 828
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 548
BseRI GAGGAG 2 cut(s) 22, 701
Bsh1236I CGCG 1 cut(s) 455
BshFI GGCC 2 cut(s) 68, 126
BshNI GGYRCC 1 cut(s) 842
BsiSI CCGG 3 cut(s) 123, 324, 358
BsiWI CGTACG 1 cut(s) 738
BslI CCNNNNNNNGG 3 cut(s) 76, 827, 828
BsmAI GTCTC 1 cut(s) 674
BsnI GGCC 2 cut(s) 68, 126
Bsp143I GATC 4 cut(s) 221, 432, 449, 760
Bsp19I CCATGG 2 cut(s) 229, 445
BspACI CCGC 3 cut(s) 453, 455, 534
BspANI GGCC 2 cut(s) 68, 126
BspCNI CTCAG 1 cut(s) 47
BspFNI CGCG 1 cut(s) 455
BspLI GGNNCC 3 cut(s) 121, 451, 844
BspPI GGATC 3 cut(s) 229, 444, 457
BspT107I GGYRCC 1 cut(s) 842
BsrDI GCAATG 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 1 cut(s) 548
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 5 cut(s) 229, 445, 453, 661, 865
BssMI GATC 4 cut(s) 221, 432, 449, 760
BssT1I CCWWGG 3 cut(s) 229, 445, 865
Bst4CI ACNGT 3 cut(s) 210, 284, 308
BstBAI YACGTR 1 cut(s) 738
BstC8I GCNNGC 2 cut(s) 124, 336
BstDEI CTNAG 3 cut(s) 34, 84, 507
BstDSI CCRYGG 4 cut(s) 229, 445, 453, 661
BstF5I GGATG 2 cut(s) 118, 553
BstFNI CGCG 1 cut(s) 455
BstKTI GATC 4 cut(s) 224, 435, 452, 763
BstMAI GTCTC 1 cut(s) 674
BstMBI GATC 4 cut(s) 221, 432, 449, 760
BstMWI GCNNNNNNNGC 2 cut(s) 461, 914
BstSFI CTRYAG 1 cut(s) 213
BstSNI TACGTA 1 cut(s) 738
BstUI CGCG 1 cut(s) 455
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BsuI GTATCC 1 cut(s) 374
BsuRI GGCC 2 cut(s) 68, 126
BtgI CCRYGG 4 cut(s) 229, 445, 453, 661
BtsCI GGATG 2 cut(s) 118, 553
BtsIMutI CAGTG 1 cut(s) 732
Cac8I GCNNGC 2 cut(s) 124, 336
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 67, 554
Cfr42I CCGCGG 1 cut(s) 456
Csp6I GTAC 3 cut(s) 735, 739, 843
CviAII CATG 4 cut(s) 128, 230, 446, 595
CviJI RGCY 8 cut(s) 38, 68, 83, 122, 126, 441, 464, 864
CviKI_1 RGCY 8 cut(s) 38, 68, 83, 122, 126, 441, 464, 864
CviQI GTAC 3 cut(s) 735, 739, 843
DdeI CTNAG 3 cut(s) 34, 84, 507
DpnI GATC 4 cut(s) 223, 434, 451, 762
DpnII GATC 4 cut(s) 221, 432, 449, 760
DraIII CACNNNGTG 1 cut(s) 413
EaeI YGGCCR 1 cut(s) 124
Eco105I TACGTA 1 cut(s) 738
Eco130I CCWWGG 3 cut(s) 229, 445, 865
Eco32I GATATC 1 cut(s) 723
Eco47I GGWCC 1 cut(s) 554
Eco57I CTGAAG 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 344
EcoRV GATATC 1 cut(s) 723
EcoT14I CCWWGG 3 cut(s) 229, 445, 865
ErhI CCWWGG 3 cut(s) 229, 445, 865
FaeI CATG 4 cut(s) 131, 233, 449, 598
FatI CATG 4 cut(s) 127, 229, 445, 594
FauI CCCGC 1 cut(s) 448
FauNDI CATATG 1 cut(s) 826
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 1 cut(s) 535
FokI GGATG 2 cut(s) 125, 560
Fsp4HI GCNGC 1 cut(s) 535
GluI GCNGC 1 cut(s) 535
GsuI CTGGAG 1 cut(s) 878
HaeIII GGCC 2 cut(s) 68, 126
HapII CCGG 3 cut(s) 123, 324, 358
Hin1II CATG 4 cut(s) 131, 233, 449, 598
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 3 cut(s) 47, 743, 885
HpaII CCGG 3 cut(s) 123, 324, 358
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 3 cut(s) 287, 304, 421
Hpy188I TCNGA 4 cut(s) 370, 514, 884, 939
Hpy188III TCNNGA 2 cut(s) 164, 265
Hpy8I GTNNAC 3 cut(s) 287, 304, 421
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 3 cut(s) 210, 284, 308
HpyCH4IV ACGT 3 cut(s) 737, 768, 782
HpyCH4V TGCA 3 cut(s) 62, 334, 875
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 914
HpyF3I CTNAG 3 cut(s) 34, 84, 507
HpySE526I ACGT 3 cut(s) 737, 768, 782
Hsp92II CATG 4 cut(s) 131, 233, 449, 598
KpnI GGTACC 1 cut(s) 846
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 432
KspI CCGCGG 1 cut(s) 456
Kzo9I GATC 4 cut(s) 221, 432, 449, 760
LmnI GCTCC 2 cut(s) 119, 479
LpnPI CCDG 6 cut(s) 136, 337, 371, 529, 825, 842
LweI GCATC 2 cut(s) 321, 904
MaeII ACGT 3 cut(s) 737, 768, 782
MaeIII GTNAC 3 cut(s) 308, 586, 649
MalI GATC 4 cut(s) 223, 434, 451, 762
MboI GATC 4 cut(s) 221, 432, 449, 760
MboII GAAGA 1 cut(s) 373
MfeI CAATTG 1 cut(s) 876
MflI RGATCY 1 cut(s) 449
MluCI AATT 7 cut(s) 185, 344, 469, 559, 713, 848, 876
MlyI GAGTC 1 cut(s) 737
MmeI TCCRAC 2 cut(s) 57, 862
MnlI CCTC 9 cut(s) 43, 73, 149, 211, 376, 510, 667, 679, 724
MroNI GCCGGC 1 cut(s) 122
MseI TTAA 1 cut(s) 488
MslI CAYNNNNRTG 2 cut(s) 132, 257
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 3 cut(s) 123, 324, 358
MunI CAATTG 1 cut(s) 876
MvnI CGCG 1 cut(s) 455
MwoI GCNNNNNNNGC 2 cut(s) 461, 914
NaeI GCCGGC 1 cut(s) 124
NcoI CCATGG 2 cut(s) 229, 445
NdeI CATATG 1 cut(s) 826
NdeII GATC 4 cut(s) 221, 432, 449, 760
NgoMIV GCCGGC 1 cut(s) 122
NlaIII CATG 4 cut(s) 131, 233, 449, 598
NlaIV GGNNCC 3 cut(s) 121, 451, 844
NmuCI GTSAC 1 cut(s) 649
PdiI GCCGGC 1 cut(s) 124
PfeI GAWTC 2 cut(s) 47, 885
Pfl23II CGTACG 1 cut(s) 738
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 1 cut(s) 536
PleI GAGTC 1 cut(s) 737
PpsI GAGTC 1 cut(s) 737
Ppu21I YACGTR 1 cut(s) 738
PspLI CGTACG 1 cut(s) 738
PspN4I GGNNCC 3 cut(s) 121, 451, 844
PspPI GGNCC 2 cut(s) 67, 554
PsuI RGATCY 1 cut(s) 449
RsaI GTAC 3 cut(s) 736, 740, 844
RsaNI GTAC 3 cut(s) 735, 739, 843
RseI CAYNNNNRTG 2 cut(s) 132, 257
SacII CCGCGG 1 cut(s) 456
SaqAI TTAA 1 cut(s) 488
SatI GCNGC 1 cut(s) 535
Sau3AI GATC 4 cut(s) 221, 432, 449, 760
Sau96I GGNCC 2 cut(s) 67, 554
SchI GAGTC 1 cut(s) 737
SetI ASST 9 cut(s) 160, 368, 526, 582, 740, 771, 785, 811, 871
SfaNI GCATC 2 cut(s) 321, 904
SfcI CTRYAG 1 cut(s) 213
Sfr303I CCGCGG 1 cut(s) 456
SgrBI CCGCGG 1 cut(s) 456
SinI GGWCC 1 cut(s) 554
SmiMI CAYNNNNRTG 2 cut(s) 132, 257
SmlI CTYRAG 1 cut(s) 787
SmoI CTYRAG 1 cut(s) 787
SnaBI TACGTA 1 cut(s) 738
Sse9I AATT 7 cut(s) 185, 344, 469, 559, 713, 848, 876
SsiI CCGC 3 cut(s) 453, 455, 534
StyI CCWWGG 3 cut(s) 229, 445, 865
TaaI ACNGT 3 cut(s) 210, 284, 308
TaiI ACGT 3 cut(s) 740, 771, 785
TaqI TCGA 4 cut(s) 264, 624, 803, 912
TasI AATT 7 cut(s) 185, 344, 469, 559, 713, 848, 876
TauI GCSGC 1 cut(s) 537
TfiI GAWTC 2 cut(s) 47, 885
Tru1I TTAA 1 cut(s) 488
Tru9I TTAA 1 cut(s) 488
TscAI CASTG 1 cut(s) 732
TseFI GTSAC 1 cut(s) 649
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 2 cut(s) 611, 726
TspGWI ACGGA 2 cut(s) 438, 654
TspRI CASTG 1 cut(s) 732
Van91I CCANNNNNTGG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 554
XapI RAATTY 5 cut(s) 185, 344, 469, 713, 848
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.