AT1G52040

carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000646
Physical Location & Seq
Reverse (-)
19350314 .. 19352791
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52040.1

Sequence Viewer

Length: 1389 bp
ATGTCGACCGGAGGACCCCAAAAATTAGAAGCACAAGGAGGAAAAGAAGGCAAAGAATGGGATGATGGAGCCGAACACGATGGTGTGACGAAGATATACGTAGCAGCTGGTGGTCTTGGAATTGAACAAATCAGATTCGATTATGTAAAGAACGGACAACCAAAGGAAGGATCTTTTCATGGTGTGAAGGGTAGAAGTACTATTTCTACGATTGAGATTAGCCATCCAGCCGAGTATCTTATTTCCATGGAGGGTTGGTACGACTCTACCAATATCATTCAAGGAATTCAGTTTAAATCCAACAAACACACTTCCCAGTACTTTGGATATGAATTTTTGGGAGATGGTACACAATTTTCACTTCAAGTTAATGACAACAAGATCATTAGCTTTCATGGGTTTGCTGATTCTCATCTCAATTCTGTTGGGGCGTATTTTGCACCCATCTCTTCCTCCTTGACTACTACTCCCAACAAAGTGGAAGCTCAAGGAGGAAATGGTGGAGAAACATTCGACGATGGTGTTTTTGATCATGTAAGAAAGGTTTATGTTGGTCAAGGTGAGTCCGGTGTAGCTTATGTCAAATTCGAATATGAGAAAGATGGGAAAAGAGAAACAAGAGACCATGGGAAAATGACATTGTTAGGAACAGAGGAGTTTGAGGTTGATTCAGATGATTACATCACATCAATTGAAGTTTCTGTCGACAAAGTCTTTGGTTATAACAGCGAAATCGTCACTGCTCTTGTGTTCAAGACTAGTAAGGGTACAACCTCACCGCCTTTTGGAATGGTGACTGAGAAGAAATTCGAACTTAAAGATGGTAACGGAGGAAAACTTGCCGGATTCCATGGGAAAGCTAGTGATGTTCTTTATGCTCTTGGTGCCTATTTCGCTCCATCGACAACTTCGACTACTCCATCTACTACCAAGAAGCTACAAGCAAGAGGTGGTAATGGAGGAGCTTCTTGGGATGATGGTGTTTTTGATGGTGTTAGAAAGATACTTGTTGGTCAAGGAAACGATGGTGTAGCTTTTGTCACGTTTGAGTACAACAAAGGCTCTCAAGCAATCCTCGGTGATGGTCATGGGAAGAAAACATTACTTGGAACTGAAACGTTTGAGCTTGATTATCCAAGTGAGTACATCACTTCAGTGGAAGGTTACTATGATAAAATTTTCGGTGTTGAAGCTGAAGTGGTGACGAGTCTAATGTTCAAGACTAACAAGAGAACGTCTCAGCCGTTTGGAATGACTGCTGGGGAACATTTCGAGCTTAAAGAAGACGGTTACAAGGTCGTTGGGTTCCATGGAAAAGCGGGTGATTTGGTTCATCAGATCGGAGTCCATATCGTGCCCATTTTCACCAATTACAGAGTTGCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

462

Amino Acids

50.17

Weight (kDa)

5.37

Isoelectric Point (pI)

25.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 10 - 145 8e-33 Jacalin-like lectin domain
Jacalin PF01419 160 - 297 1.7e-35 Jacalin-like lectin domain
Jacalin PF01419 314 - 450 6.2e-43 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 723
AccB1I GGYRCC 1 cut(s) 884
AccI GTMKAC 2 cut(s) 5, 705
AciI CCGC 2 cut(s) 779, 1319
AclI AACGTT 1 cut(s) 1118
AclWI GGATC 1 cut(s) 178
AcsI RAATTY 5 cut(s) 285, 332, 584, 806, 1176
AcuI CTGAAG 2 cut(s) 1137, 1215
AfaI GTAC 7 cut(s) 199, 260, 320, 349, 769, 1052, 1145
AfiI CCNNNNNNNGG 2 cut(s) 167, 785
AgsI TTSAA 7 cut(s) 125, 281, 365, 695, 754, 1190, 1219
AhlI ACTAGT 1 cut(s) 758
AleI CACNNNNGTG 2 cut(s) 81, 1154
Alw26I GTCTC 2 cut(s) 615, 1242
AlwI GGATC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 5 cut(s) 285, 332, 584, 806, 1176
ArsI GACNNNNNNTTYG 2 cut(s) 698, 730
Asp700I GAANNNNTTC 1 cut(s) 806
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 7 cut(s) 572, 768, 805, 1091, 1213, 1334, 1357
AsuII TTCGAA 2 cut(s) 588, 810
AvaII GGWCC 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 1359
BanI GGYRCC 1 cut(s) 884
BbsI GAAGAC 1 cut(s) 1290
BbvI GCAGC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 1228
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 2 cut(s) 615, 1242
BcuI ACTAGT 1 cut(s) 758
BfaI CTAG 2 cut(s) 759, 861
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmcAI AGTACT 2 cut(s) 199, 320
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 4 cut(s) 16, 70, 886, 1307
BmrI ACTGGG 1 cut(s) 310
BmuI ACTGGG 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 1290
BplI GAGNNNNNCTC 2 cut(s) 1222, 1254
Bpu14I TTCGAA 2 cut(s) 588, 810
BpuEI CTTGAG 2 cut(s) 471, 1050
BsaAI YACGTR 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 615
BsaJI CCNNGG 5 cut(s) 246, 625, 850, 1075, 1309
BsaWI WCCGGW 2 cut(s) 8, 566
BsaXI ACNNNNNCTCC 4 cut(s) 242, 272, 451, 481
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 785
Bse1I ACTGG 1 cut(s) 316
Bse8I GATNNNNATC 1 cut(s) 411
BseDI CCNNGG 5 cut(s) 246, 625, 850, 1075, 1309
BseGI GGATG 3 cut(s) 67, 223, 979
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 2 cut(s) 167, 785
BseMII CTCAG 2 cut(s) 789, 1253
BseNI ACTGG 1 cut(s) 316
BseRI GAGGAG 2 cut(s) 668, 975
BseSI GKGCMC 1 cut(s) 1359
BseXI GCAGC 1 cut(s) 116
BseYI CCCAGC 1 cut(s) 1259
Bsh1285I CGRYCG 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 884
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 3 cut(s) 9, 567, 843
BslI CCNNNNNNNGG 2 cut(s) 167, 785
BsmAI GTCTC 2 cut(s) 615, 1242
BsmBI CGTCTC 1 cut(s) 1242
Bso31I GGTCTC 1 cut(s) 615
Bsp119I TTCGAA 2 cut(s) 588, 810
Bsp1286I GDGCHC 1 cut(s) 1359
Bsp143I GATC 4 cut(s) 170, 381, 529, 1338
Bsp19I CCATGG 4 cut(s) 246, 625, 850, 1309
BspACI CCGC 2 cut(s) 779, 1319
BspCNI CTCAG 2 cut(s) 790, 1252
BspLI GGNNCC 4 cut(s) 16, 70, 886, 1307
BspPI GGATC 1 cut(s) 178
BspT104I TTCGAA 2 cut(s) 588, 810
BspT107I GGYRCC 1 cut(s) 884
BspTNI GGTCTC 1 cut(s) 615
BsrI ACTGG 1 cut(s) 316
BssECI CCNNGG 5 cut(s) 246, 625, 850, 1075, 1309
BssMI GATC 4 cut(s) 170, 381, 529, 1338
BssT1I CCWWGG 4 cut(s) 246, 625, 850, 1309
Bst4CI ACNGT 1 cut(s) 1289
Bst6I CTCTTC 1 cut(s) 454
BstBAI YACGTR 1 cut(s) 100
BstBI TTCGAA 2 cut(s) 588, 810
BstDEI CTNAG 2 cut(s) 798, 1239
BstDSI CCRYGG 4 cut(s) 246, 625, 850, 1309
BstF5I GGATG 3 cut(s) 67, 223, 979
BstKTI GATC 4 cut(s) 173, 384, 532, 1341
BstMAI GTCTC 2 cut(s) 615, 1242
BstMBI GATC 4 cut(s) 170, 381, 529, 1338
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 437, 884, 893
BstSLI GKGCMC 1 cut(s) 1359
BstSNI TACGTA 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 1290
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 2 cut(s) 323, 478
BstYI RGATCY 1 cut(s) 170
BtgI CCRYGG 4 cut(s) 246, 625, 850, 1309
BtsCI GGATG 3 cut(s) 67, 223, 979
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 2 cut(s) 738, 1161
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 7 cut(s) 198, 259, 319, 348, 768, 1051, 1144
CviAII CATG 8 cut(s) 179, 247, 395, 533, 626, 851, 1088, 1310
CviQI GTAC 7 cut(s) 198, 259, 319, 348, 768, 1051, 1144
DdeI CTNAG 2 cut(s) 798, 1239
DpnI GATC 4 cut(s) 172, 383, 531, 1340
DpnII GATC 4 cut(s) 170, 381, 529, 1338
DraI TTTAAA 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 454
EarI CTCTTC 1 cut(s) 454
Eco105I TACGTA 1 cut(s) 100
Eco130I CCWWGG 4 cut(s) 246, 625, 850, 1309
Eco31I GGTCTC 1 cut(s) 615
Eco47I GGWCC 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 1137, 1215
EcoO109I RGGNCCY 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 285
EcoT14I CCWWGG 4 cut(s) 246, 625, 850, 1309
ErhI CCWWGG 4 cut(s) 246, 625, 850, 1309
Esp3I CGTCTC 1 cut(s) 1242
FaeI CATG 8 cut(s) 182, 250, 398, 536, 629, 854, 1091, 1313
FatI CATG 8 cut(s) 178, 246, 394, 532, 625, 850, 1087, 1309
FauI CCCGC 1 cut(s) 1312
FbaI TGATCA 1 cut(s) 529
FblI GTMKAC 2 cut(s) 5, 705
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 3 cut(s) 74, 210, 986
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 2 cut(s) 759, 861
GluI GCNGC 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 1263
HapII CCGG 3 cut(s) 9, 567, 843
Hin1II CATG 8 cut(s) 182, 250, 398, 536, 629, 854, 1091, 1313
HincII GTYRAC 2 cut(s) 6, 706
HindII GTYRAC 2 cut(s) 6, 706
HinfI GANTC 8 cut(s) 135, 263, 407, 563, 668, 846, 1207, 1344
HpaII CCGG 3 cut(s) 9, 567, 843
HphI GGTGA 7 cut(s) 572, 768, 805, 1091, 1213, 1334, 1357
Hpy166II GTNNAC 3 cut(s) 6, 350, 706
Hpy188I TCNGA 4 cut(s) 134, 673, 1338, 1343
Hpy188III TCNNGA 2 cut(s) 754, 1219
Hpy8I GTNNAC 3 cut(s) 6, 350, 706
Hpy99I CGWCG 1 cut(s) 518
HpyAV CCTTC 4 cut(s) 41, 161, 181, 1154
HpyCH4III ACNGT 1 cut(s) 1289
HpyCH4IV ACGT 4 cut(s) 99, 1043, 1118, 1235
HpyCH4V TGCA 1 cut(s) 440
HpyF10VI GCNNNNNNNGC 3 cut(s) 437, 884, 893
HpyF3I CTNAG 2 cut(s) 798, 1239
HpySE526I ACGT 4 cut(s) 99, 1043, 1118, 1235
Hsp92II CATG 8 cut(s) 182, 250, 398, 536, 629, 854, 1091, 1313
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 4 cut(s) 170, 381, 529, 1338
LmnI GCTCC 3 cut(s) 68, 901, 962
LpnPI CCDG 7 cut(s) 22, 93, 240, 329, 580, 856, 1245
Lsp1109I GCAGC 1 cut(s) 116
MaeI CTAG 2 cut(s) 759, 861
MaeII ACGT 4 cut(s) 99, 1043, 1118, 1235
MaeIII GTNAC 8 cut(s) 85, 736, 793, 824, 1039, 1163, 1201, 1289
MalI GATC 4 cut(s) 172, 383, 531, 1340
MboI GATC 4 cut(s) 170, 381, 529, 1338
MboII GAAGA 5 cut(s) 103, 441, 814, 1105, 1295
MfeI CAATTG 1 cut(s) 690
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 1359
MlyI GAGTC 4 cut(s) 257, 572, 1216, 1353
MmeI TCCRAC 1 cut(s) 324
MroXI GAANNNNTTC 1 cut(s) 806
MseI TTAA 4 cut(s) 294, 369, 816, 1278
MslI CAYNNNNRTG 2 cut(s) 81, 1154
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 3 cut(s) 9, 567, 843
MunI CAATTG 1 cut(s) 690
MwoI GCNNNNNNNGC 3 cut(s) 437, 884, 893
NcoI CCATGG 4 cut(s) 246, 625, 850, 1309
NdeII GATC 4 cut(s) 170, 381, 529, 1338
NlaIII CATG 8 cut(s) 182, 250, 398, 536, 629, 854, 1091, 1313
NlaIV GGNNCC 4 cut(s) 16, 70, 886, 1307
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 5 cut(s) 85, 736, 793, 1039, 1201
NspV TTCGAA 2 cut(s) 588, 810
OliI CACNNNNGTG 2 cut(s) 81, 1154
PcsI WCGNNNNNNNCGW 2 cut(s) 908, 1241
PdmI GAANNNNTTC 1 cut(s) 806
PfeI GAWTC 4 cut(s) 135, 407, 668, 846
PflFI GACNNNGTC 1 cut(s) 710
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 4 cut(s) 257, 571, 1215, 1352
PpsI GAGTC 4 cut(s) 257, 571, 1215, 1352
Ppu21I YACGTR 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 14
PsiI TTATAA 1 cut(s) 723
Psp1406I AACGTT 1 cut(s) 1118
Psp5II RGGWCCY 1 cut(s) 14
PspFI CCCAGC 1 cut(s) 1259
PspN4I GGNNCC 4 cut(s) 16, 70, 886, 1307
PspPI GGNCC 1 cut(s) 14
PspPPI RGGWCCY 1 cut(s) 14
PsuI RGATCY 1 cut(s) 170
PsyI GACNNNGTC 1 cut(s) 710
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 7 cut(s) 199, 260, 320, 349, 769, 1052, 1145
RsaNI GTAC 7 cut(s) 198, 259, 319, 348, 768, 1051, 1144
RseI CAYNNNNRTG 2 cut(s) 81, 1154
SalI GTCGAC 2 cut(s) 4, 704
SaqAI TTAA 4 cut(s) 294, 369, 816, 1278
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 4 cut(s) 170, 381, 529, 1338
Sau96I GGNCC 1 cut(s) 14
ScaI AGTACT 2 cut(s) 199, 320
SchI GAGTC 4 cut(s) 257, 572, 1216, 1353
SduI GDGCHC 1 cut(s) 1359
SfuI TTCGAA 2 cut(s) 588, 810
SinI GGWCC 1 cut(s) 14
SmiMI CAYNNNNRTG 2 cut(s) 81, 1154
SmlI CTYRAG 2 cut(s) 486, 1065
SmoI CTYRAG 2 cut(s) 486, 1065
SnaBI TACGTA 1 cut(s) 100
SpeI ACTAGT 1 cut(s) 758
SsiI CCGC 2 cut(s) 779, 1319
SspMI CTAG 2 cut(s) 759, 861
StyI CCWWGG 4 cut(s) 246, 625, 850, 1309
TaaI ACNGT 1 cut(s) 1289
TaiI ACGT 4 cut(s) 102, 1046, 1121, 1238
TaqI TCGA 9 cut(s) 5, 138, 513, 588, 705, 810, 902, 911, 1272
TatI WGTACW 4 cut(s) 197, 318, 1050, 1143
TfiI GAWTC 4 cut(s) 135, 407, 668, 846
Tru1I TTAA 4 cut(s) 294, 369, 816, 1278
Tru9I TTAA 4 cut(s) 294, 369, 816, 1278
TscAI CASTG 2 cut(s) 745, 1161
TseFI GTSAC 5 cut(s) 85, 736, 793, 1039, 1201
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 5 cut(s) 85, 736, 793, 1039, 1201
TspDTI ATGAA 4 cut(s) 167, 345, 383, 1322
TspGWI ACGGA 2 cut(s) 168, 843
TspRI CASTG 2 cut(s) 745, 1161
Tth111I GACNNNGTC 1 cut(s) 710
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 5 cut(s) 285, 332, 584, 806, 1176
XmiI GTMKAC 2 cut(s) 5, 705
XmnI GAANNNNTTC 1 cut(s) 806
XspI CTAG 2 cut(s) 759, 861
ZrmI AGTACT 2 cut(s) 199, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.