AT1G52070

jacalin-related lectin

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
19364809 .. 19366925
2117 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52070.1

Sequence Viewer

Length: 948 bp
ATGGTTATCATCTATATATTTCTTTTTCTCTCCTCAGCCATTATAGATTCAACTGGGTTGGCAAAGGCCCAAAAGTTGGATGCAATTGGTGGGAAGGGAGGCAAGCAGTGGGACGATGGAGCTGACCATGACAATGTAGCAAAGGTTTATATAAGAGGTGGTCTTGAAGGCATACAATACATCAAATTTGATTATGTCAAAGATGGAAAAACTATAGATGCATCTATCCATGGTGTTTCGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCAAAACAGTGAATATATTGTATCTGTTGATGGCTACTACGACAAATCTGGTACGATGCAAGCACTTGAATTCAAAACCAACCTGAAGACTTCTGAAGTGATTGGATATCCAAAGGGTACTACAAAGTTTTCACTCGGTGGAGTCAATGGCAAGATGGTGATTGGCTTCCATGGATCTGCTGGGAAAGTCCTAAACTCCATTGGAGCATATTTAACAACAGCTCCTCCTACTAAGTCACAACTTGTAGGTGGTCTAACCGGAGGCGAACCTTGGGATGATGGCTCTAATTATGATGGCGTGAAAAAGATATCTGTCACTTACATTAGCACTCTTATAAGGAGTATCAATGTGGACTATGAAAAGGACGGCCAAGTTGTAACACGTTACCACGGGATGAAGAATGGAGATACAGAGGAGTTTGTGATAGACTATCCAAATGAGTATTTGATATCAGTGGAGGGAACCTACAACATACTCCCCGATGATAACGTTTTGGTCATTAGGTCGTTGATTTTCAAAACATCAAAAGGGAGAATCTCTCCCACATATGGGTTTGTGTCAGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTATTGTTGGATTCTATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGAGTTTACTTCTCTCCAATTCCTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

315

Amino Acids

34.04

Weight (kDa)

5.3

Isoelectric Point (pI)

19.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 27 - 162 3.3e-35 Jacalin-like lectin domain
Jacalin PF01419 174 - 309 3.4e-35 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 611
Acc65I GGTACC 1 cut(s) 839
AccB1I GGYRCC 1 cut(s) 839
AccB7I CCANNNNNTGG 1 cut(s) 76
AciI CCGC 2 cut(s) 246, 892
AclI AACGTT 1 cut(s) 765
AclWI GGATC 1 cut(s) 457
AcoI YGGCCR 1 cut(s) 643
AcsI RAATTY 3 cut(s) 185, 344, 845
AcuI CTGAAG 2 cut(s) 380, 390
AdeI CACNNNGTG 1 cut(s) 413
AfaI GTAC 3 cut(s) 328, 394, 841
AfiI CCNNNNNNNGG 3 cut(s) 76, 824, 825
AflIII ACRYGT 1 cut(s) 656
AgsI TTSAA 5 cut(s) 51, 167, 344, 349, 793
AluBI AGCT 2 cut(s) 122, 497
AluI AGCT 2 cut(s) 122, 497
AlwI GGATC 1 cut(s) 457
AoxI GGCC 2 cut(s) 66, 643
ApoI RAATTY 3 cut(s) 185, 344, 845
Asp718I GGTACC 1 cut(s) 839
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 445
BanI GGYRCC 1 cut(s) 839
BbsI GAAGAC 1 cut(s) 368
BbvCI CCTCAGC 1 cut(s) 34
BccI CCATC 7 cut(s) 110, 197, 299, 424, 548, 563, 890
BceAI ACGGC 1 cut(s) 658
BfmI CTRYAG 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 2 cut(s) 739, 841
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 4 cut(s) 70, 208, 230, 321
BmuI ACTGGG 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 368
BplI GAGNNNNNCTC 2 cut(s) 799, 831
Bpu10I CCTNAGC 1 cut(s) 34
BsaJI CCNNGG 5 cut(s) 229, 445, 545, 664, 862
BsaWI WCCGGW 1 cut(s) 533
BsaXI ACNNNNNCTCC 4 cut(s) 481, 484, 511, 514
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 824, 825
Bse1I ACTGG 1 cut(s) 58
BseDI CCNNGG 5 cut(s) 229, 445, 545, 664, 862
BseGI GGATG 4 cut(s) 85, 556, 675, 901
BseLI CCNNNNNNNGG 3 cut(s) 76, 824, 825
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 3 cut(s) 22, 489, 704
BseYI CCCAGC 1 cut(s) 455
BshFI GGCC 2 cut(s) 68, 645
BshNI GGYRCC 1 cut(s) 839
BsiSI CCGG 1 cut(s) 534
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 3 cut(s) 76, 824, 825
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 2 cut(s) 68, 645
Bsp143I GATC 1 cut(s) 449
Bsp19I CCATGG 2 cut(s) 229, 445
BspACI CCGC 2 cut(s) 246, 892
BspANI GGCC 2 cut(s) 68, 645
BspCNI CTCAG 1 cut(s) 47
BspLI GGNNCC 2 cut(s) 739, 841
BspPI GGATC 1 cut(s) 457
BspT107I GGYRCC 1 cut(s) 839
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 5 cut(s) 229, 445, 545, 664, 862
BssMI GATC 1 cut(s) 449
BssT1I CCWWGG 4 cut(s) 229, 445, 545, 862
Bst4CI ACNGT 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 104, 336
BstDEI CTNAG 2 cut(s) 34, 507
BstDSI CCRYGG 3 cut(s) 229, 445, 664
BstF5I GGATG 4 cut(s) 85, 556, 675, 901
BstKTI GATC 1 cut(s) 452
BstMBI GATC 1 cut(s) 449
BstMWI GCNNNNNNNGC 1 cut(s) 911
BstSFI CTRYAG 1 cut(s) 213
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BsuRI GGCC 2 cut(s) 68, 645
BtgI CCRYGG 3 cut(s) 229, 445, 664
BtsCI GGATG 4 cut(s) 85, 556, 675, 901
BtsI GCAGTG 1 cut(s) 113
BtsIMutI CAGTG 3 cut(s) 113, 289, 735
Cac8I GCNNGC 2 cut(s) 104, 336
Cfr13I GGNCC 1 cut(s) 67
CseI GACGC 1 cut(s) 920
Csp6I GTAC 3 cut(s) 327, 393, 840
CviAII CATG 3 cut(s) 128, 230, 446
CviJI RGCY 9 cut(s) 38, 68, 122, 309, 441, 497, 558, 645, 861
CviKI_1 RGCY 9 cut(s) 38, 68, 122, 309, 441, 497, 558, 645, 861
CviQI GTAC 3 cut(s) 327, 393, 840
DdeI CTNAG 2 cut(s) 34, 507
DpnI GATC 1 cut(s) 451
DpnII GATC 1 cut(s) 449
DraIII CACNNNGTG 1 cut(s) 413
EaeI YGGCCR 1 cut(s) 643
Eco130I CCWWGG 4 cut(s) 229, 445, 545, 862
Eco32I GATATC 3 cut(s) 383, 585, 726
Eco57I CTGAAG 2 cut(s) 380, 390
EcoRI GAATTC 1 cut(s) 344
EcoRV GATATC 3 cut(s) 383, 585, 726
EcoT14I CCWWGG 4 cut(s) 229, 445, 545, 862
EcoT22I ATGCAT 1 cut(s) 223
ErhI CCWWGG 4 cut(s) 229, 445, 545, 862
FaeI CATG 3 cut(s) 131, 233, 449
FaqI GGGAC 1 cut(s) 125
FatI CATG 3 cut(s) 127, 229, 445
FauI CCCGC 1 cut(s) 885
FauNDI CATATG 1 cut(s) 823
FokI GGATG 4 cut(s) 92, 563, 682, 908
GsaI CCCAGC 1 cut(s) 459
HaeIII GGCC 2 cut(s) 68, 645
HapII CCGG 1 cut(s) 534
HgaI GACGC 1 cut(s) 920
Hin1II CATG 3 cut(s) 131, 233, 449
HinfI GANTC 4 cut(s) 47, 417, 810, 882
HpaII CCGG 1 cut(s) 534
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 2 cut(s) 628, 925
Hpy188I TCNGA 2 cut(s) 370, 920
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 628, 925
Hpy99I CGWCG 1 cut(s) 914
HpyAV CCTTC 2 cut(s) 88, 161
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4IV ACGT 3 cut(s) 260, 658, 765
HpyCH4V TGCA 3 cut(s) 83, 221, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 911
HpyF3I CTNAG 2 cut(s) 34, 507
HpySE526I ACGT 3 cut(s) 260, 658, 765
Hsp92II CATG 3 cut(s) 131, 233, 449
KpnI GGTACC 1 cut(s) 843
Kzo9I GATC 1 cut(s) 449
LmnI GCTCC 3 cut(s) 119, 479, 502
LpnPI CCDG 6 cut(s) 39, 309, 371, 441, 547, 822
LweI GCATC 4 cut(s) 70, 208, 230, 321
MaeII ACGT 3 cut(s) 260, 658, 765
MaeIII GTNAC 4 cut(s) 510, 589, 652, 659
MalI GATC 1 cut(s) 451
MboI GATC 1 cut(s) 449
MboII GAAGA 2 cut(s) 373, 685
MfeI CAATTG 1 cut(s) 84
MflI RGATCY 1 cut(s) 449
MluCI AATT 6 cut(s) 84, 185, 344, 562, 845, 936
MlyI GAGTC 1 cut(s) 426
MmeI TCCRAC 3 cut(s) 57, 834, 859
MnlI CCTC 7 cut(s) 43, 92, 149, 510, 530, 682, 727
Mph1103I ATGCAT 1 cut(s) 223
MseI TTAA 1 cut(s) 488
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 1 cut(s) 534
MunI CAATTG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 911
NcoI CCATGG 2 cut(s) 229, 445
NdeI CATATG 1 cut(s) 823
NdeII GATC 1 cut(s) 449
NlaIII CATG 3 cut(s) 131, 233, 449
NlaIV GGNNCC 2 cut(s) 739, 841
NmuCI GTSAC 2 cut(s) 510, 589
NsiI ATGCAT 1 cut(s) 223
PfeI GAWTC 3 cut(s) 47, 810, 882
PflMI CCANNNNNTGG 1 cut(s) 76
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
PsiI TTATAA 1 cut(s) 611
Psp1406I AACGTT 1 cut(s) 765
PspFI CCCAGC 1 cut(s) 455
PspN4I GGNNCC 2 cut(s) 739, 841
PspPI GGNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 449
RsaI GTAC 3 cut(s) 328, 394, 841
RsaNI GTAC 3 cut(s) 327, 393, 840
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 1 cut(s) 488
Sau3AI GATC 1 cut(s) 449
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 426
SfaNI GCATC 4 cut(s) 70, 208, 230, 321
SfcI CTRYAG 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 6 cut(s) 84, 185, 344, 562, 845, 936
SsiI CCGC 2 cut(s) 246, 892
StyI CCWWGG 4 cut(s) 229, 445, 545, 862
TaaI ACNGT 1 cut(s) 284
TaiI ACGT 3 cut(s) 263, 661, 768
TaqI TCGA 1 cut(s) 909
TasI AATT 6 cut(s) 84, 185, 344, 562, 845, 936
TfiI GAWTC 3 cut(s) 47, 810, 882
Tru1I TTAA 1 cut(s) 488
Tru9I TTAA 1 cut(s) 488
TscAI CASTG 3 cut(s) 113, 289, 735
TseFI GTSAC 2 cut(s) 510, 589
Tsp45I GTSAC 2 cut(s) 510, 589
TspDTI ATGAA 2 cut(s) 648, 686
TspRI CASTG 3 cut(s) 113, 289, 735
Van91I CCANNNNNTGG 1 cut(s) 76
XapI RAATTY 3 cut(s) 185, 344, 845
XcmI CCANNNNNNNNNTGG 2 cut(s) 452, 850
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.