AT5G35940

jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000646
Physical Location & Seq
Forward (+)
14090574 .. 14093007
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35940.1

Sequence Viewer

Length: 1335 bp
ATGGCCCTAATGGTGAACGCTAAAGGTGGAAATGGAGGGAAAGAATGGGATGATGGGTTTGATTATGAGGGTGTAACAAAGATACATGTCCGAGCTGGTTCTGAAGGCATTCAGTTCATCAAGTTTGACTATGTCAAGGTTGGAAAAACTATTGATGGACCAATCCATGGTGTTTCTGGCCTTGGTATGACACAAACGTTTGAGATTAACCATTTGCAAAAGGAATATCTGGTATCTATTGAGGGTTACTATGACAAATCTACGGGCGTGATTCAATCAATCCAATTCAAAACTAACGTGAAGACTTCTGATATGATGGGGTTCAACAAGGGTACTAAGTTTTCCCTAGGAATCATAAGGAACAAGATCATTGGGTTTCATGGATTTTCTGACAAGAATGTCTATTCTCTTGGAGCATATTTCATCAAGGTTCTTGCAACCAAATCGGGAATGCAAGGTGGTCAAAACACAGGGAAAAGTTATGATTATGGTGGTGACTATGATGGCATAAGAAAAGTGTACGTTACATATGATGGCACTTCAATAAGGCATATGAGGGTGGACTATGATAAAGCCGGTCAAGTGGAATGCTATGAGTACGGGGACAAAACCGGAACACAATATAAGATTACGGTGAATTATCCATATGAATGTATCACATCCGTAGAAGGAAGCTACGCAAATACCCAACCTTATGGATGTATTGTCCTTAGGTCGTTAACATTCAAAACATCAAATGGGAGGACCTTAGTAATTGGAACAGTGACTGGTACCAAGTTCTTGCTTGAGAGCAAAGGAAATGCTATTGTTGGGTTCCATGGACGGGTAGGTTCTTGTGTTGATAGTATCGGTGCATATTACGCTCCGTTTTCTCCTTCTCCTCCACCTACACAGAAACTAGAGGGACAAGGTGGTGATGGAGGAGATTCTTGGGACGATGGTGCTTTCCTAAATGTAAAGAAAGTATATATTGGACAAGGCTCGAACGGTATTGTCGCCGTTAAGTTTGAGTACGAGAACGACGCTAGTGAGGTTGTTGTTGGAGATGAACATGGAAAGACTACATTGCTTGGATACGAAGTGTTCGAGCTGGATTATCCGAATGAATACATCACATCATTGGAGGGTTGCCACGACAAGGTCATGGGAGCTGAAACTGGAGTTATAACAATGCTTAGGTTCAAGACAAACAAACGTACCTCTCCACCTTTTGGACTTGAAGCTGGTGTCAACTTCGTCCTCCAGAAGGAAAGTCACAAGATCACTGGGTTCCATGGAAAGTCCAGTACTATGCTTCATCAGATTGGGGTTCATGTCGTTCCCATCACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

444

Amino Acids

48.51

Weight (kDa)

6.47

Isoelectric Point (pI)

20.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 6 - 140 3e-35 Jacalin-like lectin domain
Jacalin PF01419 150 - 286 2.2e-30 Jacalin-like lectin domain
Jacalin PF01419 302 - 438 2.2e-39 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1166
AasI GACNNNNNNGTC 1 cut(s) 398
Acc65I GGTACC 1 cut(s) 770
AccB1I GGYRCC 1 cut(s) 770
AccB7I CCANNNNNTGG 2 cut(s) 167, 1211
AclI AACGTT 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 123
AdeI CACNNNGTG 1 cut(s) 1332
AfaI GTAC 7 cut(s) 334, 521, 599, 772, 1013, 1198, 1288
AfiI CCNNNNNNNGG 5 cut(s) 167, 823, 1138, 1211, 1246
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 7 cut(s) 275, 289, 325, 543, 727, 1183, 1220
AluBI AGCT 5 cut(s) 95, 675, 1090, 1151, 1223
AluI AGCT 5 cut(s) 95, 675, 1090, 1151, 1223
AlwNI CAGNNNCTG 1 cut(s) 767
AoxI GGCC 2 cut(s) 3, 178
Asp700I GAANNNNTTC 1 cut(s) 108
Asp718I GGTACC 1 cut(s) 770
AspA2I CCTAGG 1 cut(s) 346
AspS9I GGNCC 3 cut(s) 4, 158, 744
AsuHPI GGTGA 4 cut(s) 25, 506, 646, 926
AvaII GGWCC 2 cut(s) 158, 744
AvrII CCTAGG 1 cut(s) 346
AxyI CCTNAGG 1 cut(s) 710
BaeI ACNNNNGTAYC 2 cut(s) 1180, 1213
BanI GGYRCC 1 cut(s) 770
BbsI GAAGAC 1 cut(s) 308
BccI CCATC 8 cut(s) 47, 149, 310, 497, 527, 911, 932, 1331
BceAI ACGGC 1 cut(s) 983
BcgI CGANNNNNNTGC 2 cut(s) 426, 460
BciVI GTATCC 1 cut(s) 1067
BfaI CTAG 3 cut(s) 347, 899, 1026
BfuI GTATCC 1 cut(s) 1067
BlnI CCTAGG 1 cut(s) 346
BmcAI AGTACT 1 cut(s) 1288
Bme18I GGWCC 2 cut(s) 158, 744
BmgT120I GGNCC 3 cut(s) 4, 158, 744
BmiI GGNNCC 3 cut(s) 772, 815, 1271
BmrI ACTGGG 1 cut(s) 1275
BmuI ACTGGG 1 cut(s) 1275
BpiI GAAGAC 1 cut(s) 308
BpmI CTGGAG 2 cut(s) 1179, 1226
Bpu10I CCTNAGC 1 cut(s) 1175
BpuEI CTTGAG 1 cut(s) 806
BsaJI CCNNGG 5 cut(s) 166, 181, 346, 817, 1273
BsaWI WCCGGW 1 cut(s) 611
Bsc4I CCNNNNNNNGG 5 cut(s) 167, 823, 1138, 1211, 1246
Bse118I RCCGGY 1 cut(s) 575
Bse1I ACTGG 4 cut(s) 772, 1162, 1270, 1284
Bse21I CCTNAGG 1 cut(s) 710
Bse3DI GCAATG 1 cut(s) 1064
BseDI CCNNGG 5 cut(s) 166, 181, 346, 817, 1273
BseGI GGATG 3 cut(s) 55, 659, 704
BseLI CCNNNNNNNGG 5 cut(s) 167, 823, 1138, 1211, 1246
BseMI GCAATG 1 cut(s) 1064
BseMII CTCAG 1 cut(s) 1320
BseNI ACTGG 4 cut(s) 772, 1162, 1270, 1284
BseRI GAGGAG 2 cut(s) 870, 936
BshFI GGCC 2 cut(s) 5, 180
BshNI GGYRCC 1 cut(s) 770
BsiSI CCGG 2 cut(s) 576, 612
BslFI GGGAC 3 cut(s) 617, 918, 947
BslI CCNNNNNNNGG 5 cut(s) 167, 823, 1138, 1211, 1246
BsmFI GGGAC 3 cut(s) 617, 918, 947
BsmI GAATGC 3 cut(s) 108, 456, 593
BsnI GGCC 2 cut(s) 5, 180
Bsp143I GATC 2 cut(s) 366, 1260
Bsp19I CCATGG 3 cut(s) 166, 817, 1273
BspANI GGCC 2 cut(s) 5, 180
BspCNI CTCAG 1 cut(s) 1321
BspLI GGNNCC 3 cut(s) 772, 815, 1271
BspT107I GGYRCC 1 cut(s) 770
BsrDI GCAATG 1 cut(s) 1064
BsrFI RCCGGY 1 cut(s) 575
BsrI ACTGG 4 cut(s) 772, 1162, 1270, 1284
BssAI RCCGGY 1 cut(s) 575
BssECI CCNNGG 5 cut(s) 166, 181, 346, 817, 1273
BssMI GATC 2 cut(s) 366, 1260
BssT1I CCWWGG 5 cut(s) 166, 181, 346, 817, 1273
Bst4CI ACNGT 3 cut(s) 634, 763, 989
BstDEI CTNAG 5 cut(s) 336, 710, 748, 1175, 1329
BstDSI CCRYGG 3 cut(s) 166, 817, 1273
BstENI CCTNNNNNAGG 1 cut(s) 1244
BstF5I GGATG 3 cut(s) 55, 659, 704
BstKTI GATC 2 cut(s) 369, 1263
BstMBI GATC 2 cut(s) 366, 1260
BstMWI GCNNNNNNNGC 1 cut(s) 860
BstNSI RCATGY 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 308
BstXI CCANNNNNNTGG 1 cut(s) 695
Bsu36I CCTNAGG 1 cut(s) 710
BsuI GTATCC 1 cut(s) 1067
BsuRI GGCC 2 cut(s) 5, 180
BtgI CCRYGG 3 cut(s) 166, 817, 1273
BtsCI GGATG 3 cut(s) 55, 659, 704
BtsIMutI CAGTG 3 cut(s) 768, 1263, 1326
CaiI CAGNNNCTG 1 cut(s) 767
Cfr10I RCCGGY 1 cut(s) 575
Cfr13I GGNCC 3 cut(s) 4, 158, 744
CseI GACGC 1 cut(s) 1031
Csp6I GTAC 7 cut(s) 333, 520, 598, 771, 1012, 1197, 1287
CviAII CATG 8 cut(s) 86, 167, 380, 818, 1052, 1144, 1274, 1313
CviJI RGCY 9 cut(s) 5, 95, 180, 575, 675, 981, 1090, 1151, 1223
CviKI_1 RGCY 9 cut(s) 5, 95, 180, 575, 675, 981, 1090, 1151, 1223
CviQI GTAC 7 cut(s) 333, 520, 598, 771, 1012, 1197, 1287
DdeI CTNAG 5 cut(s) 336, 710, 748, 1175, 1329
DpnI GATC 2 cut(s) 368, 1262
DpnII GATC 2 cut(s) 366, 1260
DraIII CACNNNGTG 1 cut(s) 1332
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
Eco130I CCWWGG 5 cut(s) 166, 181, 346, 817, 1273
Eco47I GGWCC 2 cut(s) 158, 744
Eco57I CTGAAG 1 cut(s) 123
Eco81I CCTNAGG 1 cut(s) 710
EcoNI CCTNNNNNAGG 1 cut(s) 1244
EcoO109I RGGNCCY 1 cut(s) 744
EcoT14I CCWWGG 5 cut(s) 166, 181, 346, 817, 1273
ErhI CCWWGG 5 cut(s) 166, 181, 346, 817, 1273
FaeI CATG 8 cut(s) 89, 170, 383, 821, 1055, 1147, 1277, 1316
FaqI GGGAC 3 cut(s) 617, 918, 947
FatI CATG 8 cut(s) 85, 166, 379, 817, 1051, 1143, 1273, 1312
FauNDI CATATG 3 cut(s) 529, 552, 646
FokI GGATG 3 cut(s) 62, 646, 711
FspBI CTAG 3 cut(s) 347, 899, 1026
GsuI CTGGAG 2 cut(s) 1179, 1226
HaeIII GGCC 2 cut(s) 5, 180
HapII CCGG 2 cut(s) 576, 612
HgaI GACGC 1 cut(s) 1031
Hin1II CATG 8 cut(s) 89, 170, 383, 821, 1055, 1147, 1277, 1316
HincII GTYRAC 2 cut(s) 720, 1231
HindII GTYRAC 2 cut(s) 720, 1231
HinfI GANTC 3 cut(s) 271, 351, 926
HpaI GTTAAC 1 cut(s) 720
HpaII CCGG 2 cut(s) 576, 612
HphI GGTGA 4 cut(s) 25, 506, 646, 926
Hpy166II GTNNAC 5 cut(s) 16, 520, 562, 720, 1231
Hpy188I TCNGA 6 cut(s) 92, 103, 310, 391, 1101, 1302
Hpy188III TCNNGA 3 cut(s) 447, 1183, 1243
Hpy8I GTNNAC 5 cut(s) 16, 520, 562, 720, 1231
Hpy99I CGWCG 1 cut(s) 1025
HpyAV CCTTC 4 cut(s) 98, 662, 885, 1240
HpyCH4III ACNGT 3 cut(s) 634, 763, 989
HpyCH4IV ACGT 4 cut(s) 197, 297, 522, 1195
HpyCH4V TGCA 4 cut(s) 217, 437, 454, 854
HpyF10VI GCNNNNNNNGC 1 cut(s) 860
HpyF3I CTNAG 5 cut(s) 336, 710, 748, 1175, 1329
HpySE526I ACGT 4 cut(s) 197, 297, 522, 1195
Hsp92II CATG 8 cut(s) 89, 170, 383, 821, 1055, 1147, 1277, 1316
KpnI GGTACC 1 cut(s) 774
KspAI GTTAAC 1 cut(s) 720
Kzo9I GATC 2 cut(s) 366, 1260
LmnI GCTCC 3 cut(s) 413, 868, 1148
MaeI CTAG 3 cut(s) 347, 899, 1026
MaeII ACGT 4 cut(s) 197, 297, 522, 1195
MaeIII GTNAC 6 cut(s) 73, 245, 494, 523, 763, 1253
MalI GATC 2 cut(s) 368, 1262
MboI GATC 2 cut(s) 366, 1260
MboII GAAGA 1 cut(s) 313
MluCI AATT 3 cut(s) 284, 637, 753
MmeI TCCRAC 2 cut(s) 121, 1021
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 3 cut(s) 207, 719, 1002
MslI CAYNNNNRTG 1 cut(s) 649
MspI CCGG 2 cut(s) 576, 612
Mva1269I GAATGC 3 cut(s) 108, 456, 593
MwoI GCNNNNNNNGC 1 cut(s) 860
NcoI CCATGG 3 cut(s) 166, 817, 1273
NdeI CATATG 3 cut(s) 529, 552, 646
NdeII GATC 2 cut(s) 366, 1260
NlaIII CATG 8 cut(s) 89, 170, 383, 821, 1055, 1147, 1277, 1316
NlaIV GGNNCC 3 cut(s) 772, 815, 1271
NmuCI GTSAC 3 cut(s) 494, 763, 1253
NspI RCATGY 1 cut(s) 89
PciI ACATGT 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 1083
PctI GAATGC 3 cut(s) 108, 456, 593
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 3 cut(s) 271, 351, 926
PflFI GACNNNGTC 2 cut(s) 131, 1139
PflMI CCANNNNNTGG 2 cut(s) 167, 1211
PpuMI RGGWCCY 1 cut(s) 744
PscI ACATGT 1 cut(s) 85
PsiI TTATAA 1 cut(s) 1166
Psp1406I AACGTT 1 cut(s) 197
Psp5II RGGWCCY 1 cut(s) 744
PspN4I GGNNCC 3 cut(s) 772, 815, 1271
PspPI GGNCC 3 cut(s) 4, 158, 744
PspPPI RGGWCCY 1 cut(s) 744
PstNI CAGNNNCTG 1 cut(s) 767
PsyI GACNNNGTC 2 cut(s) 131, 1139
RsaI GTAC 7 cut(s) 334, 521, 599, 772, 1013, 1198, 1288
RsaNI GTAC 7 cut(s) 333, 520, 598, 771, 1012, 1197, 1287
RseI CAYNNNNRTG 1 cut(s) 649
SaqAI TTAA 3 cut(s) 207, 719, 1002
Sau3AI GATC 2 cut(s) 366, 1260
Sau96I GGNCC 3 cut(s) 4, 158, 744
ScaI AGTACT 1 cut(s) 1288
SinI GGWCC 2 cut(s) 158, 744
SmiMI CAYNNNNRTG 1 cut(s) 649
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
Sse9I AATT 3 cut(s) 284, 637, 753
SspMI CTAG 3 cut(s) 347, 899, 1026
StyI CCWWGG 5 cut(s) 166, 181, 346, 817, 1273
TaaI ACNGT 3 cut(s) 634, 763, 989
TaiI ACGT 4 cut(s) 200, 300, 525, 1198
TaqI TCGA 2 cut(s) 983, 1086
TasI AATT 3 cut(s) 284, 637, 753
TatI WGTACW 1 cut(s) 1286
TfiI GAWTC 3 cut(s) 271, 351, 926
Tru1I TTAA 3 cut(s) 207, 719, 1002
Tru9I TTAA 3 cut(s) 207, 719, 1002
TscAI CASTG 3 cut(s) 768, 1270, 1333
TseFI GTSAC 3 cut(s) 494, 763, 1253
Tsp45I GTSAC 3 cut(s) 494, 763, 1253
TspDTI ATGAA 8 cut(s) 106, 368, 412, 663, 1062, 1119, 1286, 1301
TspGWI ACGGA 2 cut(s) 652, 855
TspRI CASTG 3 cut(s) 768, 1270, 1333
Tth111I GACNNNGTC 2 cut(s) 131, 1139
Van91I CCANNNNNTGG 2 cut(s) 167, 1211
VpaK11BI GGWCC 2 cut(s) 158, 744
XagI CCTNNNNNAGG 1 cut(s) 1244
XceI RCATGY 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 173
XmaJI CCTAGG 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 3 cut(s) 347, 899, 1026
ZrmI AGTACT 1 cut(s) 1288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.