AT3G16450

Jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000646
Physical Location & Seq
Forward (+)
5588292 .. 5590085
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16450.1

Sequence Viewer

Length: 903 bp
ATGGCTCAAAAAGTGGAAGCAGGGGGTGGCGCCGGAGGAGCTTCATGGGATGATGGTGTCCACGATGGCGTTAGAAAGGTGCATGTAGGGCAAGGCCAAGATGGTGTGTCATCTATCAACGTCGTGTATGCGAAGGACTCTCAGGATGTTGAAGGAGGTGAACACGGAAAGAAAACGTTACTTGGATTTGAAACGTTTGAGGTTGATGCAGACGACTACATAGTAGCAGTGCAAGTGACCTACGACAACGTGTTTGGCCAAGACTCTGACATCATCACATCTATTACCTTCAATACATTCAAGGGAAAAACATCTCCACCCTATGGATTGGAAACGCAAAAGAAGTTTGTACTCAAGGACAAAAACGGTGGTAAACTTGTTGGCTTCCATGGACGCGCTGGTGAAGCTTTATATGCTCTTGGAGCATATTTTGCTACAACCACAACTCCTGTGACTCCTGCCAAAAAACTATCTGCAATTGGTGGTGATGAAGGAACTGCATGGGACGACGGTGCGTACGATGGTGTCAAGAAGGTGTACGTAGGACAAGGCCAAGATGGGATATCAGCCGTTAAGTTTGAGTACAACAAAGGCGCGGAGAATATCGTAGGAGGTGAACATGGAAAGCCTACTTTACTCGGATTCGAGGAGTTTGAGATTGACTATCCAAGTGAATACATCACCGCAGTTGAAGGCACCTATGATAAAATCTTTGGGAGTGATGGCCTAATCATAACTATGCTTAGGTTCAAGACTAATAAACAAACGTCTGCTCCCTTTGGACTTGAAGCTGGCACAGCCTTCGAACTTAAAGAGGAAGGGCACAAGATCGTTGGCTTCCATGGAAAAGCCAGTGAGTTGCTTCATCAGTTTGGAGTCCATGTCATGCCACTCACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

300

Amino Acids

32.02

Weight (kDa)

5.06

Isoelectric Point (pI)

21.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 6 - 143 2.2e-36 Jacalin-like lectin domain
Jacalin PF01419 158 - 294 8.3e-42 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 29, 695
AccB7I CCANNNNNTGG 1 cut(s) 323
AccII CGCG 2 cut(s) 396, 596
AciI CCGC 2 cut(s) 596, 684
AclI AACGTT 2 cut(s) 176, 194
AcoI YGGCCR 1 cut(s) 256
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 4 cut(s) 351, 518, 539, 584
AfiI CCNNNNNNNGG 1 cut(s) 323
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 7 cut(s) 152, 191, 292, 301, 692, 751, 788
AluBI AGCT 3 cut(s) 41, 407, 791
AluI AGCT 3 cut(s) 41, 407, 791
AoxI GGCC 4 cut(s) 94, 256, 550, 724
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AspLEI GCGC 3 cut(s) 32, 398, 596
AsuHPI GGTGA 6 cut(s) 170, 413, 497, 626, 673, 886
AsuII TTCGAA 1 cut(s) 804
BaeGI GKGCMC 1 cut(s) 825
BalI TGGCCA 1 cut(s) 258
BanI GGYRCC 2 cut(s) 29, 695
BccI CCATC 6 cut(s) 47, 59, 95, 515, 551, 716
BceAI ACGGC 1 cut(s) 554
BcgI CGANNNNNNTGC 2 cut(s) 784, 818
BfoI RGCGCY 1 cut(s) 33
BmiI GGNNCC 2 cut(s) 31, 697
BmsI GCATC 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 743
Bpu14I TTCGAA 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 338
BsaAI YACGTR 1 cut(s) 541
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 388, 841
BsaXI ACNNNNNCTCC 6 cut(s) 430, 460, 757, 787, 867, 897
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 852
BseDI CCNNGG 2 cut(s) 388, 841
BseGI GGATG 2 cut(s) 55, 151
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 852
BseRI GAGGAG 2 cut(s) 51, 662
BseSI GKGCMC 1 cut(s) 825
Bsh1236I CGCG 2 cut(s) 396, 596
BshFI GGCC 4 cut(s) 96, 258, 552, 726
BshNI GGYRCC 2 cut(s) 29, 695
BsiSI CCGG 1 cut(s) 33
BsiWI CGTACG 1 cut(s) 516
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 1 cut(s) 323
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 4 cut(s) 96, 258, 552, 726
Bsp119I TTCGAA 1 cut(s) 804
Bsp1286I GDGCHC 1 cut(s) 825
Bsp143I GATC 1 cut(s) 828
Bsp19I CCATGG 2 cut(s) 388, 841
BspACI CCGC 2 cut(s) 596, 684
BspANI GGCC 4 cut(s) 96, 258, 552, 726
BspCNI CTCAG 1 cut(s) 154
BspFNI CGCG 2 cut(s) 396, 596
BspLI GGNNCC 2 cut(s) 31, 697
BspT104I TTCGAA 1 cut(s) 804
BspT107I GGYRCC 2 cut(s) 29, 695
BsrI ACTGG 1 cut(s) 852
BssECI CCNNGG 2 cut(s) 388, 841
BssMI GATC 1 cut(s) 828
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 2 cut(s) 388, 841
Bst4CI ACNGT 2 cut(s) 368, 512
BstACI GRCGYC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 431
BstBAI YACGTR 1 cut(s) 541
BstBI TTCGAA 1 cut(s) 804
BstC8I GCNNGC 1 cut(s) 793
BstDEI CTNAG 2 cut(s) 141, 743
BstDSI CCRYGG 2 cut(s) 388, 841
BstF5I GGATG 2 cut(s) 55, 151
BstFNI CGCG 2 cut(s) 396, 596
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 3 cut(s) 32, 398, 596
BstKTI GATC 1 cut(s) 831
BstMBI GATC 1 cut(s) 828
BstMWI GCNNNNNNNGC 7 cut(s) 38, 88, 404, 413, 422, 431, 797
BstNSI RCATGY 1 cut(s) 86
BstSLI GKGCMC 1 cut(s) 825
BstSNI TACGTA 1 cut(s) 541
BstUI CGCG 2 cut(s) 396, 596
BsuRI GGCC 4 cut(s) 96, 258, 552, 726
BtgI CCRYGG 2 cut(s) 388, 841
BtsCI GGATG 2 cut(s) 55, 151
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 2 cut(s) 234, 859
Cac8I GCNNGC 1 cut(s) 793
CfoI GCGC 3 cut(s) 32, 398, 596
CseI GACGC 1 cut(s) 402
Csp6I GTAC 4 cut(s) 350, 517, 538, 583
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 8 cut(s) 45, 83, 389, 501, 620, 842, 881, 886
CviQI GTAC 4 cut(s) 350, 517, 538, 583
DdeI CTNAG 2 cut(s) 141, 743
DinI GGCGCC 1 cut(s) 31
DpnI GATC 1 cut(s) 830
DpnII GATC 1 cut(s) 828
EaeI YGGCCR 1 cut(s) 256
Eco105I TACGTA 1 cut(s) 541
Eco130I CCWWGG 2 cut(s) 388, 841
Eco32I GATATC 1 cut(s) 564
EcoRV GATATC 1 cut(s) 564
EcoT14I CCWWGG 2 cut(s) 388, 841
EgeI GGCGCC 1 cut(s) 31
EheI GGCGCC 1 cut(s) 31
ErhI CCWWGG 2 cut(s) 388, 841
FaeI CATG 8 cut(s) 48, 86, 392, 504, 623, 845, 884, 889
FaqI GGGAC 1 cut(s) 518
FatI CATG 8 cut(s) 44, 82, 388, 500, 619, 841, 880, 885
FokI GGATG 2 cut(s) 62, 158
GlaI GCGC 3 cut(s) 31, 397, 595
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 4 cut(s) 96, 258, 552, 726
HapII CCGG 1 cut(s) 33
HgaI GACGC 1 cut(s) 402
HhaI GCGC 3 cut(s) 32, 398, 596
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 8 cut(s) 48, 86, 392, 504, 623, 845, 884, 889
Hin6I GCGC 3 cut(s) 30, 396, 594
HinP1I GCGC 3 cut(s) 30, 396, 594
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 5 cut(s) 137, 263, 454, 642, 876
HpaII CCGG 1 cut(s) 33
HphI GGTGA 6 cut(s) 170, 413, 497, 626, 673, 886
Hpy166II GTNNAC 5 cut(s) 61, 161, 374, 538, 617
Hpy188I TCNGA 2 cut(s) 268, 641
Hpy188III TCNNGA 3 cut(s) 143, 529, 751
Hpy8I GTNNAC 5 cut(s) 61, 161, 374, 538, 617
Hpy99I CGWCG 2 cut(s) 125, 512
HpyAV CCTTC 8 cut(s) 127, 146, 298, 485, 526, 686, 811, 812
HpyCH4III ACNGT 2 cut(s) 368, 512
HpyCH4IV ACGT 6 cut(s) 120, 176, 194, 249, 540, 767
HpyCH4V TGCA 5 cut(s) 82, 209, 232, 476, 500
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 88, 404, 413, 422, 431, 797
HpyF3I CTNAG 2 cut(s) 141, 743
HpySE526I ACGT 6 cut(s) 120, 176, 194, 249, 540, 767
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 8 cut(s) 48, 86, 392, 504, 623, 845, 884, 889
HspAI GCGC 3 cut(s) 30, 396, 594
KasI GGCGCC 1 cut(s) 29
Kzo9I GATC 1 cut(s) 828
LmnI GCTCC 3 cut(s) 38, 422, 778
LpnPI CCDG 8 cut(s) 6, 46, 128, 384, 462, 471, 777, 865
LweI GCATC 1 cut(s) 196
MaeII ACGT 6 cut(s) 120, 176, 194, 249, 540, 767
MaeIII GTNAC 3 cut(s) 177, 235, 451
MalI GATC 1 cut(s) 830
MboI GATC 1 cut(s) 828
MfeI CAATTG 1 cut(s) 477
MhlI GDGCHC 1 cut(s) 825
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 1 cut(s) 477
MluNI TGGCCA 1 cut(s) 258
Mly113I GGCGCC 1 cut(s) 30
MlyI GAGTC 4 cut(s) 131, 257, 448, 885
MnlI CCTC 6 cut(s) 29, 149, 193, 605, 640, 808
Mox20I TGGCCA 1 cut(s) 258
MscI TGGCCA 1 cut(s) 258
MseI TTAA 2 cut(s) 573, 810
MslI CAYNNNNRTG 1 cut(s) 737
Msp20I TGGCCA 1 cut(s) 258
MspI CCGG 1 cut(s) 33
MunI CAATTG 1 cut(s) 477
MvnI CGCG 2 cut(s) 396, 596
MwoI GCNNNNNNNGC 7 cut(s) 38, 88, 404, 413, 422, 431, 797
NarI GGCGCC 1 cut(s) 30
NcoI CCATGG 2 cut(s) 388, 841
NdeII GATC 1 cut(s) 828
NlaIII CATG 8 cut(s) 48, 86, 392, 504, 623, 845, 884, 889
NlaIV GGNNCC 2 cut(s) 31, 697
NmuCI GTSAC 2 cut(s) 235, 451
NspI RCATGY 1 cut(s) 86
NspV TTCGAA 1 cut(s) 804
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PfeI GAWTC 1 cut(s) 642
Pfl23II CGTACG 1 cut(s) 516
PflMI CCANNNNNTGG 1 cut(s) 323
PleI GAGTC 4 cut(s) 131, 257, 448, 884
PluTI GGCGCC 1 cut(s) 33
PpsI GAGTC 4 cut(s) 131, 257, 448, 884
Ppu21I YACGTR 1 cut(s) 541
Psp1406I AACGTT 2 cut(s) 176, 194
PspLI CGTACG 1 cut(s) 516
PspN4I GGNNCC 2 cut(s) 31, 697
RsaI GTAC 4 cut(s) 351, 518, 539, 584
RsaNI GTAC 4 cut(s) 350, 517, 538, 583
RseI CAYNNNNRTG 1 cut(s) 737
SaqAI TTAA 2 cut(s) 573, 810
Sau3AI GATC 1 cut(s) 828
SchI GAGTC 4 cut(s) 131, 257, 448, 885
SduI GDGCHC 1 cut(s) 825
SfaNI GCATC 1 cut(s) 196
SfoI GGCGCC 1 cut(s) 31
SfuI TTCGAA 1 cut(s) 804
SmiMI CAYNNNNRTG 1 cut(s) 737
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SnaBI TACGTA 1 cut(s) 541
Sse9I AATT 1 cut(s) 477
SsiI CCGC 2 cut(s) 596, 684
SspDI GGCGCC 1 cut(s) 29
StyI CCWWGG 2 cut(s) 388, 841
TaaI ACNGT 2 cut(s) 368, 512
TaiI ACGT 6 cut(s) 123, 179, 197, 252, 543, 770
TaqI TCGA 2 cut(s) 645, 804
TasI AATT 1 cut(s) 477
TatI WGTACW 2 cut(s) 349, 582
TfiI GAWTC 1 cut(s) 642
Tru1I TTAA 2 cut(s) 573, 810
Tru9I TTAA 2 cut(s) 573, 810
TscAI CASTG 2 cut(s) 234, 859
TseFI GTSAC 2 cut(s) 235, 451
Tsp45I GTSAC 2 cut(s) 235, 451
TspDTI ATGAA 3 cut(s) 33, 504, 854
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 2 cut(s) 234, 859
Van91I CCANNNNNTGG 1 cut(s) 323
XceI RCATGY 1 cut(s) 86
XcmI CCANNNNNNNNNTGG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.