AT1G52110

jacalin-related lectin

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
19386709 .. 19389740
3032 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52110.1

Sequence Viewer

Length: 1848 bp
ATGTACAATTATAGTCGTTCGCCAGGATTCTACGCAAAGAAAATATTGAAGATGTCTATCAAGCGTATGAAGAAGAAGAATGAGATGTCGTCTGTCGTGGATCTAATAAAGATCGGAAGGAATTGTCCATCCGCCATAGTTCAGTCGGATGTCTCTCTTTCCTCTACCATCATAGGTCAACGTTTTCTCTCTAAGATATATGTACAATATTCTCCTAAAGGCATACAGTCCATTCGGTTCAGCTATATCAATAGTGGGAAACCCATTGATGGATCCCTCCATGGCCAATCGGATAATACTTACACGCAGACGTTTGAGATAAACCATCTAAAACATGAACATCTTGAATCTGTTGAGGGATACTACACAGATGACACTGGGATCCAAGCACTTCAATTTAAAACCAACTTAAGGATTTCTGAACCGATGGGATATCATGACGGGTGTACTAAATTTATACTAGCAATAGAGGGGAAAAAAATCATTGGGTTTCACGGATTATCTTTTGAGGGGAGGAGGGTGTACTCTCTTGGAGCATATTTTACTTGGATTACTCCTACAAGAATAGAAGCGATTGGGGGCAAAGTAGGCACGAAGTGGGATGATGGAGTCGACCATGCGGGTTTTACAAAGATACACGTACGAAGTGGTCCGAAAGGCATTCAGTACATCAAGTTTCTGTATGTTGACAAGTATGGACATCTGAAAGATGGGCCAATCCATGGTTCTATCTCAGGAAAAGTTGAGGGTTACTACAATGATCATGACGAATCTGGAGTCATTCAGGCACTTCGATTCAAGACTAATATCAAGACCTCTGAACTAATGGGATCCAACACGGGTAAGAAGTTTAGACTTGCAGCCAGTGAAATGAAGATTGTTGGGTTTCATGGATACGCTGGGAAGAATCTAAGGTCTCTTGGTGCATATTTCACTCCGATTACTCCTACAAAATTGGCATGGCAAGGTACTGCTCTAGGCACACTTTGGGATCATGGTGCTTTCCAGGCTGTTAGAAAGCTTTCCGTTTTCGAGATTGGTGGTTATATAACGTGCCTCGGTATAACCTATGACAACGATGGCAAAGTAGAAAAGCGTGACCACGGAATGCAAGATGGTTACCCTGGAGAAGAAGTAGAGTTTGTGGTTGACTATCCAAATGAATTTATCACGTCTGTGGTCGGGACCATGAGTACTGATAGGGTAGCATCATTGACTTTTAAAACATCAAAAGGGAGAACCTCTCAAAGATTTGGAGACAGAACTGCTAATTTAGTTGAATTTGTCCTTGAGAACAAAGATTGTGCTATTGTCGGATTTCATGGATGGTGGACTCCTAGTTATCTTACGGCTCTTGGTGCATATTCTTTTCCGATGCCTCTTTCTCCTGCTTCGGAAAAGCTAGAAGCACAAGGTGGTGATGGAGGAGCTTCGTGGGACGATGGCGGTAATTTCGAAGGTGTTAGAAAGATATGCATTGGGACAGGTGAGATTGGTATCGTTTCTGTCAAGTTTCTGTATGAAAATGACACTCACGAGATAGTAGTGGGAGATCATCATGGGAACAAGAACCTGATTAAACATGAAGAGTTCGAGCTGGATTATCCGGGTGAATACCTCACATTAGTGGAAGGTAGTTATGACATAGTACCTGGAAGTGAGGAAACTGAAGTTATAATCATGCTCATGTTTACGACCAACATGCGAGCCTCTCCATGTTATGGACTCGATGATAACCCAAGCTTTGTGCTCCAAAAGAGAGGTCACAAGATCGTTGGATTCCATGGGAAATCAAGTAAAATGCTTCATCAACTTGGGATCCACGTACTCCCCATCACCCACCCTTGA

Protein Analysis

615

Amino Acids

68.34

Weight (kDa)

7.69

Isoelectric Point (pI)

28.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 63 - 180 2.9e-23 Jacalin-like lectin domain
Jacalin PF01419 189 - 310 3e-24 Jacalin-like lectin domain
Jacalin PF01419 323 - 455 1.3e-22 Jacalin-like lectin domain
Jacalin PF01419 469 - 608 4e-35 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1676
AccB7I CCANNNNNTGG 2 cut(s) 722, 1721
AccI GTMKAC 1 cut(s) 612
AciI CCGC 3 cut(s) 132, 620, 1446
AclI AACGTT 1 cut(s) 181
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 3 cut(s) 452, 1163, 1280
AcuI CTGAAG 1 cut(s) 1689
AdeI CACNNNGTG 2 cut(s) 597, 1415
AfiI CCNNNNNNNGG 4 cut(s) 269, 411, 722, 1721
AflII CTTAAG 1 cut(s) 409
AflIII ACRYGT 1 cut(s) 637
AgsI TTSAA 5 cut(s) 49, 347, 395, 799, 1280
AjiI CACGTC 1 cut(s) 1173
AjnI CCWGG 4 cut(s) 22, 1005, 1123, 1651
AjuI GAANNNNNNNTTGG 2 cut(s) 709, 741
AleI CACNNNNGTG 2 cut(s) 1175, 1625
AluBI AGCT 6 cut(s) 243, 1021, 1402, 1430, 1597, 1743
AluI AGCT 6 cut(s) 243, 1021, 1402, 1430, 1597, 1743
Alw21I GWGCWC 1 cut(s) 1752
Alw26I GTCTC 3 cut(s) 157, 921, 1251
AoxI GGCC 2 cut(s) 283, 713
ApeKI GCWGC 1 cut(s) 860
ApoI RAATTY 3 cut(s) 452, 1163, 1280
ArsI GACNNNNNNTTYG 4 cut(s) 762, 794, 1747, 1779
Asp700I GAANNNNTTC 1 cut(s) 1021
AspS9I GGNCC 3 cut(s) 650, 713, 1185
AsuC2I CCSGG 1 cut(s) 1608
AsuHPI GGTGA 4 cut(s) 1430, 1499, 1622, 1828
AsuII TTCGAA 1 cut(s) 1455
AvaII GGWCC 2 cut(s) 650, 1185
BalI TGGCCA 1 cut(s) 285
BamHI GGATCC 4 cut(s) 272, 381, 830, 1818
BauI CACGAG 1 cut(s) 1535
Bbv12I GWGCWC 1 cut(s) 1752
BbvI GCAGC 1 cut(s) 872
BceAI ACGGC 1 cut(s) 1365
BcgI CGANNNNNNTGC 2 cut(s) 1684, 1718
BciT130I CCWGG 4 cut(s) 24, 1007, 1125, 1653
BciVI GTATCC 2 cut(s) 353, 887
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 1 cut(s) 1608
BcoDI GTCTC 3 cut(s) 157, 921, 1251
BfaI CTAG 4 cut(s) 461, 977, 1338, 1403
BfrI CTTAAG 1 cut(s) 409
BfuI GTATCC 2 cut(s) 353, 887
BisI GCNGC 1 cut(s) 861
BlsI GCNGC 1 cut(s) 862
BmcAI AGTACT 1 cut(s) 1195
Bme1390I CCNGG 5 cut(s) 24, 1007, 1125, 1608, 1653
Bme18I GGWCC 2 cut(s) 650, 1185
BmgBI CACGTC 1 cut(s) 1173
BmgT120I GGNCC 3 cut(s) 650, 713, 1185
BmiI GGNNCC 5 cut(s) 274, 383, 832, 1186, 1820
BmrFI CCNGG 5 cut(s) 24, 1007, 1125, 1608, 1653
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 2 cut(s) 1217, 1365
BmuI ACTGGG 1 cut(s) 387
BplI GAGNNNNNCTC 2 cut(s) 1228, 1260
BpmI CTGGAG 2 cut(s) 795, 1146
Bpu14I TTCGAA 1 cut(s) 1455
BpuEI CTTGAG 1 cut(s) 1310
BpuMI CCSGG 1 cut(s) 1608
BsaAI YACGTR 2 cut(s) 640, 1825
BsaBI GATNNNNATC 2 cut(s) 56, 1496
BsaI GGTCTC 1 cut(s) 921
BsaJI CCNNGG 6 cut(s) 280, 721, 1057, 1102, 1123, 1783
BsaXI ACNNNNNCTCC 2 cut(s) 1119, 1149
Bsc4I CCNNNNNNNGG 4 cut(s) 269, 411, 722, 1721
Bse1I ACTGG 2 cut(s) 382, 864
Bse8I GATNNNNATC 2 cut(s) 56, 1496
BseBI CCWGG 4 cut(s) 24, 1007, 1125, 1653
BseDI CCNNGG 6 cut(s) 280, 721, 1057, 1102, 1123, 1783
BseGI GGATG 4 cut(s) 128, 154, 607, 1331
BseJI GATNNNNATC 2 cut(s) 56, 1496
BseLI CCNNNNNNNGG 4 cut(s) 269, 411, 722, 1721
BseMII CTCAG 1 cut(s) 747
BseNI ACTGG 2 cut(s) 382, 864
BseRI GAGGAG 2 cut(s) 529, 1440
BseXI GCAGC 1 cut(s) 872
BseYI CCCAGC 1 cut(s) 899
BshFI GGCC 2 cut(s) 285, 715
BsiHKAI GWGCWC 1 cut(s) 1752
BsiSI CCGG 1 cut(s) 1607
BsiWI CGTACG 1 cut(s) 640
BslFI GGGAC 3 cut(s) 1198, 1451, 1495
BslI CCNNNNNNNGG 4 cut(s) 269, 411, 722, 1721
BsmAI GTCTC 3 cut(s) 157, 921, 1251
BsmFI GGGAC 3 cut(s) 1198, 1451, 1495
BsmI GAATGC 2 cut(s) 660, 1113
BsnI GGCC 2 cut(s) 285, 715
Bso31I GGTCTC 1 cut(s) 921
Bsp119I TTCGAA 1 cut(s) 1455
Bsp1286I GDGCHC 1 cut(s) 1752
Bsp1407I TGTACA 2 cut(s) 3, 202
Bsp19I CCATGG 3 cut(s) 280, 721, 1783
BspACI CCGC 3 cut(s) 132, 620, 1446
BspANI GGCC 2 cut(s) 285, 715
BspCNI CTCAG 1 cut(s) 746
BspHI TCATGA 2 cut(s) 436, 763
BspLI GGNNCC 5 cut(s) 274, 383, 832, 1186, 1820
BspT104I TTCGAA 1 cut(s) 1455
BspTI CTTAAG 1 cut(s) 409
BspTNI GGTCTC 1 cut(s) 921
BsrGI TGTACA 2 cut(s) 3, 202
BsrI ACTGG 2 cut(s) 382, 864
BssECI CCNNGG 6 cut(s) 280, 721, 1057, 1102, 1123, 1783
BssSI CACGAG 1 cut(s) 1535
BssT1I CCWWGG 3 cut(s) 280, 721, 1783
Bst2BI CACGAG 1 cut(s) 1535
Bst2UI CCWGG 4 cut(s) 24, 1007, 1125, 1653
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 1581
BstAFI CTTAAG 1 cut(s) 409
BstAUI TGTACA 2 cut(s) 3, 202
BstBAI YACGTR 2 cut(s) 640, 1825
BstBI TTCGAA 1 cut(s) 1455
BstC8I GCNNGC 1 cut(s) 1707
BstDEI CTNAG 3 cut(s) 192, 733, 911
BstDSI CCRYGG 4 cut(s) 280, 721, 1102, 1783
BstEII GGTNACC 1 cut(s) 1118
BstF5I GGATG 4 cut(s) 128, 154, 607, 1331
BstMAI GTCTC 3 cut(s) 157, 921, 1251
BstMWI GCNNNNNNNGC 3 cut(s) 588, 1007, 1358
BstNI CCWGG 4 cut(s) 24, 1007, 1125, 1653
BstNSI RCATGY 1 cut(s) 1705
BstPI GGTNACC 1 cut(s) 1118
BstSCI CCNGG 5 cut(s) 22, 1005, 1123, 1606, 1651
BstV1I GCAGC 1 cut(s) 872
BstX2I RGATCY 5 cut(s) 100, 272, 381, 830, 1818
BstYI RGATCY 5 cut(s) 100, 272, 381, 830, 1818
BsuI GTATCC 2 cut(s) 353, 887
BsuRI GGCC 2 cut(s) 285, 715
BtgI CCRYGG 4 cut(s) 280, 721, 1102, 1783
BtrI CACGTC 1 cut(s) 1173
BtsCI GGATG 4 cut(s) 128, 154, 607, 1331
BtsIMutI CAGTG 2 cut(s) 375, 871
Cac8I GCNNGC 1 cut(s) 1707
CciI TCATGA 2 cut(s) 436, 763
Cfr13I GGNCC 3 cut(s) 650, 713, 1185
DdeI CTNAG 3 cut(s) 192, 733, 911
DraI TTTAAA 2 cut(s) 400, 1222
DraIII CACNNNGTG 2 cut(s) 597, 1415
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 1581
EarI CTCTTC 1 cut(s) 1581
EciI GGCGGA 1 cut(s) 121
Eco130I CCWWGG 3 cut(s) 280, 721, 1783
Eco31I GGTCTC 1 cut(s) 921
Eco32I GATATC 1 cut(s) 434
Eco47I GGWCC 2 cut(s) 650, 1185
Eco57I CTGAAG 1 cut(s) 1689
Eco91I GGTNACC 1 cut(s) 1118
EcoO65I GGTNACC 1 cut(s) 1118
EcoRII CCWGG 4 cut(s) 22, 1005, 1123, 1651
EcoRV GATATC 1 cut(s) 434
EcoT14I CCWWGG 3 cut(s) 280, 721, 1783
EcoT22I ATGCAT 1 cut(s) 1478
ErhI CCWWGG 3 cut(s) 280, 721, 1783
FaqI GGGAC 3 cut(s) 1198, 1451, 1495
FauI CCCGC 1 cut(s) 613
FbaI TGATCA 1 cut(s) 760
FblI GTMKAC 1 cut(s) 612
Fnu4HI GCNGC 1 cut(s) 861
FokI GGATG 4 cut(s) 115, 161, 614, 1338
Fsp4HI GCNGC 1 cut(s) 861
FspBI CTAG 4 cut(s) 461, 977, 1338, 1403
GluI GCNGC 1 cut(s) 861
GsaI CCCAGC 1 cut(s) 903
GsuI CTGGAG 2 cut(s) 795, 1146
HaeIII GGCC 2 cut(s) 285, 715
HapII CCGG 1 cut(s) 1607
HincII GTYRAC 4 cut(s) 179, 613, 688, 1150
HindII GTYRAC 4 cut(s) 179, 613, 688, 1150
HindIII AAGCTT 2 cut(s) 1019, 1741
HpaII CCGG 1 cut(s) 1607
HphI GGTGA 4 cut(s) 1430, 1499, 1622, 1828
Hpy166II GTNNAC 8 cut(s) 179, 447, 523, 613, 688, 1150, 1332, 1692
Hpy8I GTNNAC 8 cut(s) 179, 447, 523, 613, 688, 1150, 1332, 1692
HpyAV CCTTC 3 cut(s) 111, 1451, 1625
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 6 cut(s) 181, 311, 639, 1052, 1172, 1824
HpyCH4V TGCA 5 cut(s) 860, 926, 1111, 1361, 1476
HpyF10VI GCNNNNNNNGC 3 cut(s) 588, 1007, 1358
HpyF3I CTNAG 3 cut(s) 192, 733, 911
HpySE526I ACGT 6 cut(s) 181, 311, 639, 1052, 1172, 1824
Ksp22I TGATCA 1 cut(s) 760
LmnI GCTCC 3 cut(s) 533, 1427, 1755
Lsp1109I GCAGC 1 cut(s) 872
LweI GCATC 2 cut(s) 1217, 1365
MaeI CTAG 4 cut(s) 461, 977, 1338, 1403
MaeII ACGT 6 cut(s) 181, 311, 639, 1052, 1172, 1824
MaeIII GTNAC 4 cut(s) 749, 1097, 1118, 1763
MboII GAAGA 8 cut(s) 61, 82, 85, 88, 886, 916, 1142, 1598
MflI RGATCY 5 cut(s) 100, 272, 381, 830, 1818
MhlI GDGCHC 1 cut(s) 1752
MlsI TGGCCA 1 cut(s) 285
MluCI AATT 9 cut(s) 7, 121, 395, 452, 953, 1163, 1270, 1280, 1450
MluNI TGGCCA 1 cut(s) 285
MlyI GAGTC 4 cut(s) 618, 786, 1327, 1719
MmeI TCCRAC 4 cut(s) 126, 858, 1294, 1756
Mox20I TGGCCA 1 cut(s) 285
Mph1103I ATGCAT 1 cut(s) 1478
MroXI GAANNNNTTC 1 cut(s) 1021
MscI TGGCCA 1 cut(s) 285
MseI TTAA 4 cut(s) 399, 410, 1221, 1578
MslI CAYNNNNRTG 3 cut(s) 1175, 1625, 1685
Msp20I TGGCCA 1 cut(s) 285
MspCI CTTAAG 1 cut(s) 409
MspI CCGG 1 cut(s) 1607
MspR9I CCNGG 5 cut(s) 24, 1007, 1125, 1608, 1653
Mva1269I GAATGC 2 cut(s) 660, 1113
MvaI CCWGG 4 cut(s) 24, 1007, 1125, 1653
MwoI GCNNNNNNNGC 3 cut(s) 588, 1007, 1358
NciI CCSGG 1 cut(s) 1608
NcoI CCATGG 3 cut(s) 280, 721, 1783
NlaIV GGNNCC 5 cut(s) 274, 383, 832, 1186, 1820
NmuCI GTSAC 2 cut(s) 1097, 1763
NsiI ATGCAT 1 cut(s) 1478
NspI RCATGY 1 cut(s) 1705
NspV TTCGAA 1 cut(s) 1455
OliI CACNNNNGTG 2 cut(s) 1175, 1625
PagI TCATGA 2 cut(s) 436, 763
PctI GAATGC 2 cut(s) 660, 1113
PdmI GAANNNNTTC 1 cut(s) 1021
PfeI GAWTC 6 cut(s) 27, 347, 770, 795, 907, 1779
Pfl23II CGTACG 1 cut(s) 640
PflMI CCANNNNNTGG 2 cut(s) 722, 1721
PkrI GCNGC 1 cut(s) 862
PleI GAGTC 4 cut(s) 617, 785, 1327, 1719
PpsI GAGTC 4 cut(s) 617, 785, 1327, 1719
Ppu21I YACGTR 2 cut(s) 640, 1825
PsiI TTATAA 1 cut(s) 1676
Psp1406I AACGTT 1 cut(s) 181
Psp6I CCWGG 4 cut(s) 22, 1005, 1123, 1651
PspEI GGTNACC 1 cut(s) 1118
PspFI CCCAGC 1 cut(s) 899
PspGI CCWGG 4 cut(s) 22, 1005, 1123, 1651
PspLI CGTACG 1 cut(s) 640
PspN4I GGNNCC 5 cut(s) 274, 383, 832, 1186, 1820
PspPI GGNCC 3 cut(s) 650, 713, 1185
PsuI RGATCY 5 cut(s) 100, 272, 381, 830, 1818
RseI CAYNNNNRTG 3 cut(s) 1175, 1625, 1685
SalI GTCGAC 1 cut(s) 611
SaqAI TTAA 4 cut(s) 399, 410, 1221, 1578
SatI GCNGC 1 cut(s) 861
Sau96I GGNCC 3 cut(s) 650, 713, 1185
ScaI AGTACT 1 cut(s) 1195
SchI GAGTC 4 cut(s) 618, 786, 1327, 1719
ScrFI CCNGG 5 cut(s) 24, 1007, 1125, 1608, 1653
SduI GDGCHC 1 cut(s) 1752
SfaNI GCATC 2 cut(s) 1217, 1365
SfuI TTCGAA 1 cut(s) 1455
SinI GGWCC 2 cut(s) 650, 1185
SmiMI CAYNNNNRTG 3 cut(s) 1175, 1625, 1685
SmlI CTYRAG 2 cut(s) 409, 1289
SmoI CTYRAG 2 cut(s) 409, 1289
Sse9I AATT 9 cut(s) 7, 121, 395, 452, 953, 1163, 1270, 1280, 1450
SsiI CCGC 3 cut(s) 132, 620, 1446
SspI AATATT 2 cut(s) 45, 209
SspMI CTAG 4 cut(s) 461, 977, 1338, 1403
StyD4I CCNGG 5 cut(s) 22, 1005, 1123, 1606, 1651
StyI CCWWGG 3 cut(s) 280, 721, 1783
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 6 cut(s) 184, 314, 642, 1055, 1175, 1827
TaqI TCGA 6 cut(s) 612, 793, 1032, 1455, 1593, 1728
TasI AATT 9 cut(s) 7, 121, 395, 452, 953, 1163, 1270, 1280, 1450
TatI WGTACW 6 cut(s) 3, 202, 446, 522, 666, 1193
TfiI GAWTC 6 cut(s) 27, 347, 770, 795, 907, 1779
Tru1I TTAA 4 cut(s) 399, 410, 1221, 1578
Tru9I TTAA 4 cut(s) 399, 410, 1221, 1578
TscAI CASTG 2 cut(s) 382, 871
TseFI GTSAC 2 cut(s) 1097, 1763
TseI GCWGC 1 cut(s) 860
Tsp45I GTSAC 2 cut(s) 1097, 1763
TspDTI ATGAA 9 cut(s) 83, 351, 878, 887, 1176, 1310, 1536, 1599, 1796
TspGWI ACGGA 3 cut(s) 510, 1015, 1119
TspRI CASTG 2 cut(s) 382, 871
Van91I CCANNNNNTGG 2 cut(s) 722, 1721
Vha464I CTTAAG 1 cut(s) 409
VpaK11BI GGWCC 2 cut(s) 650, 1185
XapI RAATTY 3 cut(s) 452, 1163, 1280
XceI RCATGY 1 cut(s) 1705
XmiI GTMKAC 1 cut(s) 612
XmnI GAANNNNTTC 1 cut(s) 1021
XspI CTAG 4 cut(s) 461, 977, 1338, 1403
ZrmI AGTACT 1 cut(s) 1195
Zsp2I ATGCAT 1 cut(s) 1478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.