AT1G60095

jacalin-related lectin

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
22159694 .. 22162426
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G60095.1

Sequence Viewer

Length: 1806 bp
ATGTCTCAAGATTCAAATATGTTCGAGAGATTGGAAGCACAAGGTAAAATAGATTCTTCAAGCGATTATAAGTGGGACGATGGATCCGAGCATGATGACGTAACAAAAATATATGTAAGCTTTGGTAAAGAATGCATAAGGAACATCCGATTCGACTATATCAAGAGTGGACAACCAAAATATGGATCGTTCCATGGTCCCACTTTTCAAGGCCTCCTCCAAACGTTTGAGATTGACCATAAAAAAGATGAACAACTTGTATCTGTTGAGGGTTATTGCAAGCCCGGGTCGGATTTGATTCAAGGAGTTCAATTCAAAACCAACTTGAGGATTTCTGAAATCATAGGATTTGAAAAAGCTATATTTGGTAATCCTACTACGTTTTCACTAGCTGAGGATGGAAAGAAGATCATCGGGTTTCACGGATATTCCATGGCAAACCTAAACTCTCTTGGAGCATACTTCACTTGGATTTCTCCAACTAAGATGGAAGCAAAAGGAGGAAAAGGAGGCACAGAGTGGAACGATGGAGCTGAACATGAAGGTTTTACAAAAATATATGTACAAGGTGGTTGTGATGGTATACAATACATCAAGTTCGATTATGTCAAGGATGGACAACATAAATATGGGTCACCCCATGGTGTCAAGGGTAGCGAATCCACAGAACCGTTTGAGATTAACCATCTCGACAAAGAATATTTGATATCCGTGGAGGGTTATTATGATGAAGGCGATTCGGGGGTTATTCAAGGAATTCAATTCAAAACTAATATAAAGACTTCGGAACTGATAGGAGACAAAAAGGGTAGGAAGTTTTCACTAGCAGCCAATGGAAAGAAGATCATTGGGTTTCATGGATATGCTGACAAGAATCTAAACTCTCTCGGAGCATATTTCACAACCTCTCCTTTGATTTCATTAGAACACACTACAGGTTCTGATTTAGTTAATCATATTTGGGATGATGGAAGTTTTGAAGGCGTAAGAAAAGTATATGTTCGCTATGATAGCTTGGAGATATGTTATGTCGAGTTTGACTATGACAACAAAGGCAAAGTGGAAAAGCGTGAGCATGGGATGTTTTATTCATGGGTACAACAAGGAGAGTTTGTGGTGGACTATCCTAATGAATTTATCACATCTGTGGAGGGGACTATGCGCACTGAATCCTTTATGCAGGTTGCATCATTGACTTTCAAAACATCAAAAGGTAGAACTTCTTCGACGTTTGGAAGTCCAAGTGATAGTAAATTCTTGCTTGAAAGCAAAGGTTGTGGTGTTGTTGGGTTCTATGGACGGTGTTTTAGTAGTATTTTTGACCTTGGAGCATATTTTCGTCCGCTGCCGCCTCCTTCCAACACAGAGAAAGTAGAAGCAAAAGGTGGTGATGGTGGAGCCTCTTGGGATGATGGTGGTTTTGACGGCATTAGAAATATATACATAGGACACAACAAGATGGGTATCGCATTCGTCAAGTTTCTTTACGATAAGGACAGTCAGATCGTGGTCGGAGATGATCATGGTAGCAACACATTACTAAGAGTTGACGAGTTTGAGTTGGAGCATCCGGGTGAATACTTGATATCTGTCGAGGGTAGTTATGATGTAGTAGATGGAAGTGAGTCTGAAGTTATACGCATGCTTAGGTTCAAGACTAATTTGCGAACCTCTCAACTCTTTGGACACGAGACAACGCCAAGCTTCATACTCGAGAAGGAATGTCACAAGATCGTCGGGTTCCATGGAAAAATCGGTAAGATGCTTCATCAAATTGGGGTCAATGTTTTACCGATTACAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

601

Amino Acids

67.12

Weight (kDa)

5.42

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 22 - 154 3.9e-25 Jacalin-like lectin domain
Jacalin PF01419 163 - 299 1.3e-35 Jacalin-like lectin domain
Jacalin PF01419 319 - 445 9.9e-27 Jacalin-like lectin domain
Jacalin PF01419 458 - 594 2.7e-38 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
Acc16I TGCGCA 1 cut(s) 1163
Acc36I ACCTGC 1 cut(s) 1171
AccB7I CCANNNNNTGG 1 cut(s) 182
AccI GTMKAC 1 cut(s) 583
AciI CCGC 2 cut(s) 1343, 1349
AclI AACGTT 1 cut(s) 224
AclWI GGATC 3 cut(s) 78, 91, 193
AcsI RAATTY 3 cut(s) 756, 1133, 1253
AcuI CTGAAG 1 cut(s) 1650
AdeI CACNNNGTG 1 cut(s) 519
AfaI GTAC 2 cut(s) 564, 1098
AfiI CCNNNNNNNGG 2 cut(s) 182, 327
AleI CACNNNNGTG 1 cut(s) 1145
AluBI AGCT 6 cut(s) 120, 359, 392, 533, 1014, 1704
AluI AGCT 6 cut(s) 120, 359, 392, 533, 1014, 1704
Alw26I GTCTC 3 cut(s) 9, 792, 1685
AlwI GGATC 3 cut(s) 78, 91, 193
AlwNI CAGNNNCTG 1 cut(s) 941
Ama87I CYCGRG 2 cut(s) 284, 1712
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 2 cut(s) 827, 1345
ApoI RAATTY 3 cut(s) 756, 1133, 1253
Asp700I GAANNNNTTC 1 cut(s) 1222
AspLEI GCGC 1 cut(s) 1164
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 3 cut(s) 285, 286, 1572
AsuHPI GGTGA 3 cut(s) 627, 1400, 1586
AvaI CYCGRG 2 cut(s) 284, 1712
AvaII GGWCC 1 cut(s) 197
BamHI GGATCC 1 cut(s) 83
BarI GAAGNNNNNNTAC 2 cut(s) 1207, 1239
BauI CACGAG 1 cut(s) 1688
BbvCI CCTCAGC 1 cut(s) 393
BbvI GCAGC 2 cut(s) 839, 1332
BceAI ACGGC 1 cut(s) 1441
BclI TGATCA 1 cut(s) 1519
BcnI CCSGG 3 cut(s) 285, 286, 1572
BcoDI GTCTC 3 cut(s) 9, 792, 1685
BfaI CTAG 2 cut(s) 389, 824
BfmI CTRYAG 1 cut(s) 933
BfuAI ACCTGC 1 cut(s) 1171
BisI GCNGC 3 cut(s) 828, 1346, 1349
BlsI GCNGC 3 cut(s) 829, 1347, 1350
Bme1390I CCNGG 3 cut(s) 285, 286, 1572
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 2 cut(s) 284, 1712
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 4 cut(s) 85, 199, 1399, 1742
BmrFI CCNGG 3 cut(s) 285, 286, 1572
BmsI GCATC 3 cut(s) 1196, 1576, 1752
Bpu10I CCTNAGC 2 cut(s) 393, 1646
BpuEI CTTGAG 1 cut(s) 346
BpuMI CCSGG 3 cut(s) 285, 286, 1572
BsaBI GATNNNNATC 1 cut(s) 1463
BsaJI CCNNGG 7 cut(s) 193, 284, 432, 640, 711, 1324, 1744
BsaXI ACNNNNNCTCC 4 cut(s) 892, 922, 1098, 1128
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 327
Bse8I GATNNNNATC 1 cut(s) 1463
BseDI CCNNGG 7 cut(s) 193, 284, 432, 640, 711, 1324, 1744
BseGI GGATG 7 cut(s) 144, 403, 619, 970, 1086, 1414, 1567
BseJI GATNNNNATC 1 cut(s) 1463
BseLI CCNNNNNNNGG 2 cut(s) 182, 327
BseMII CTCAG 1 cut(s) 384
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 2 cut(s) 839, 1332
BshFI GGCC 1 cut(s) 213
BsiHKCI CYCGRG 2 cut(s) 284, 1712
BsiSI CCGG 2 cut(s) 285, 1571
BslFI GGGAC 3 cut(s) 89, 183, 1168
BslI CCNNNNNNNGG 2 cut(s) 182, 327
BsmAI GTCTC 3 cut(s) 9, 792, 1685
BsmFI GGGAC 3 cut(s) 89, 183, 1168
BsmI GAATGC 2 cut(s) 137, 1469
BsnI GGCC 1 cut(s) 213
BsoBI CYCGRG 2 cut(s) 284, 1712
Bsp1407I TGTACA 1 cut(s) 562
Bsp143I GATC 7 cut(s) 83, 185, 408, 843, 1503, 1519, 1731
Bsp19I CCATGG 4 cut(s) 193, 432, 640, 1744
BspACI CCGC 2 cut(s) 1343, 1349
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 385
BspLI GGNNCC 4 cut(s) 85, 199, 1399, 1742
BspMI ACCTGC 1 cut(s) 1171
BspPI GGATC 3 cut(s) 78, 91, 193
BsrGI TGTACA 1 cut(s) 562
BssECI CCNNGG 7 cut(s) 193, 284, 432, 640, 711, 1324, 1744
BssMI GATC 7 cut(s) 83, 185, 408, 843, 1503, 1519, 1731
BssNAI GTATAC 1 cut(s) 584
BssSI CACGAG 1 cut(s) 1688
BssT1I CCWWGG 5 cut(s) 193, 432, 640, 1324, 1744
Bst1107I GTATAC 1 cut(s) 584
Bst2BI CACGAG 1 cut(s) 1688
Bst4CI ACNGT 3 cut(s) 672, 1302, 1499
BstAUI TGTACA 1 cut(s) 562
BstC8I GCNNGC 2 cut(s) 281, 1643
BstDEI CTNAG 4 cut(s) 393, 483, 1541, 1646
BstDSI CCRYGG 5 cut(s) 193, 432, 640, 711, 1744
BstEII GGTNACC 1 cut(s) 633
BstF5I GGATG 7 cut(s) 144, 403, 619, 970, 1086, 1414, 1567
BstHHI GCGC 1 cut(s) 1164
BstKTI GATC 7 cut(s) 86, 188, 411, 846, 1506, 1522, 1734
BstMAI GTCTC 3 cut(s) 9, 792, 1685
BstMBI GATC 7 cut(s) 83, 185, 408, 843, 1503, 1519, 1731
BstMWI GCNNNNNNNGC 1 cut(s) 1011
BstNSI RCATGY 1 cut(s) 1645
BstPI GGTNACC 1 cut(s) 633
BstSCI CCNGG 3 cut(s) 283, 284, 1570
BstSFI CTRYAG 1 cut(s) 933
BstV1I GCAGC 2 cut(s) 839, 1332
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BstZ17I GTATAC 1 cut(s) 584
BsuRI GGCC 1 cut(s) 213
BtgI CCRYGG 5 cut(s) 193, 432, 640, 711, 1744
BtsCI GGATG 7 cut(s) 144, 403, 619, 970, 1086, 1414, 1567
BtsIMutI CAGTG 1 cut(s) 1164
BveI ACCTGC 1 cut(s) 1171
Cac8I GCNNGC 2 cut(s) 281, 1643
CaiI CAGNNNCTG 1 cut(s) 941
CfoI GCGC 1 cut(s) 1164
Cfr13I GGNCC 1 cut(s) 197
Cfr9I CCCGGG 1 cut(s) 284
Csp6I GTAC 2 cut(s) 563, 1097
CspCI CAANNNNNGTGG 2 cut(s) 1258, 1293
CviQI GTAC 2 cut(s) 563, 1097
DdeI CTNAG 4 cut(s) 393, 483, 1541, 1646
DpnI GATC 7 cut(s) 85, 187, 410, 845, 1505, 1521, 1733
DpnII GATC 7 cut(s) 83, 185, 408, 843, 1503, 1519, 1731
DraIII CACNNNGTG 1 cut(s) 519
Eco130I CCWWGG 5 cut(s) 193, 432, 640, 1324, 1744
Eco147I AGGCCT 1 cut(s) 213
Eco32I GATATC 2 cut(s) 708, 1587
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 1650
Eco88I CYCGRG 2 cut(s) 284, 1712
Eco91I GGTNACC 1 cut(s) 633
EcoO65I GGTNACC 1 cut(s) 633
EcoRI GAATTC 1 cut(s) 756
EcoRV GATATC 2 cut(s) 708, 1587
EcoT14I CCWWGG 5 cut(s) 193, 432, 640, 1324, 1744
EcoT22I ATGCAT 1 cut(s) 137
ErhI CCWWGG 5 cut(s) 193, 432, 640, 1324, 1744
FaqI GGGAC 3 cut(s) 89, 183, 1168
FbaI TGATCA 1 cut(s) 1519
FblI GTMKAC 1 cut(s) 583
Fnu4HI GCNGC 3 cut(s) 828, 1346, 1349
FokI GGATG 7 cut(s) 131, 410, 626, 977, 1093, 1421, 1554
Fsp4HI GCNGC 3 cut(s) 828, 1346, 1349
FspAI RTGCGCAY 1 cut(s) 1163
FspBI CTAG 2 cut(s) 389, 824
FspI TGCGCA 1 cut(s) 1163
GlaI GCGC 1 cut(s) 1163
GluI GCNGC 3 cut(s) 828, 1346, 1349
HaeIII GGCC 1 cut(s) 213
HapII CCGG 2 cut(s) 285, 1571
HhaI GCGC 1 cut(s) 1164
Hin6I GCGC 1 cut(s) 1162
HinP1I GCGC 1 cut(s) 1162
HincII GTYRAC 1 cut(s) 1549
HindII GTYRAC 1 cut(s) 1549
HindIII AAGCTT 2 cut(s) 118, 1702
HinfI GANTC 9 cut(s) 11, 53, 150, 298, 659, 737, 874, 1169, 1625
HpaII CCGG 2 cut(s) 285, 1571
HphI GGTGA 3 cut(s) 627, 1400, 1586
Hpy166II GTNNAC 4 cut(s) 170, 584, 1120, 1549
Hpy188III TCNNGA 6 cut(s) 8, 25, 163, 689, 1654, 1714
Hpy8I GTNNAC 4 cut(s) 170, 584, 1120, 1549
Hpy99I CGWCG 2 cut(s) 1231, 1739
HpyAV CCTTC 5 cut(s) 536, 725, 974, 1365, 1711
HpyCH4III ACNGT 3 cut(s) 672, 1302, 1499
HpyCH4IV ACGT 4 cut(s) 99, 224, 380, 1229
HpyCH4V TGCA 4 cut(s) 135, 279, 1180, 1187
HpyF10VI GCNNNNNNNGC 1 cut(s) 1011
HpyF3I CTNAG 4 cut(s) 393, 483, 1541, 1646
HpySE526I ACGT 4 cut(s) 99, 224, 380, 1229
HspAI GCGC 1 cut(s) 1162
Ksp22I TGATCA 1 cut(s) 1519
Kzo9I GATC 7 cut(s) 83, 185, 408, 843, 1503, 1519, 1731
LmnI GCTCC 6 cut(s) 455, 530, 890, 1328, 1397, 1564
LpnPI CCDG 4 cut(s) 298, 921, 1166, 1584
Lsp1109I GCAGC 2 cut(s) 839, 1332
LweI GCATC 3 cut(s) 1196, 1576, 1752
MaeI CTAG 2 cut(s) 389, 824
MaeII ACGT 4 cut(s) 99, 224, 380, 1229
MaeIII GTNAC 3 cut(s) 100, 633, 1724
MalI GATC 7 cut(s) 85, 187, 410, 845, 1505, 1521, 1733
MboI GATC 7 cut(s) 83, 185, 408, 843, 1503, 1519, 1731
MboII GAAGA 4 cut(s) 48, 418, 853, 1215
MflI RGATCY 1 cut(s) 83
MluCI AATT 7 cut(s) 311, 756, 761, 1133, 1253, 1660, 1773
MlyI GAGTC 1 cut(s) 1634
MmeI TCCRAC 5 cut(s) 270, 503, 1383, 1492, 1542
Mph1103I ATGCAT 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 1222
MseI TTAA 2 cut(s) 681, 951
MslI CAYNNNNRTG 4 cut(s) 627, 861, 1145, 1572
MspA1I CMGCKG 1 cut(s) 1345
MspI CCGG 2 cut(s) 285, 1571
MspR9I CCNGG 3 cut(s) 285, 286, 1572
Mva1269I GAATGC 2 cut(s) 137, 1469
MwoI GCNNNNNNNGC 1 cut(s) 1011
NciI CCSGG 3 cut(s) 285, 286, 1572
NcoI CCATGG 4 cut(s) 193, 432, 640, 1744
NdeII GATC 7 cut(s) 83, 185, 408, 843, 1503, 1519, 1731
NlaIV GGNNCC 4 cut(s) 85, 199, 1399, 1742
NmuCI GTSAC 2 cut(s) 633, 1724
NsbI TGCGCA 1 cut(s) 1163
NsiI ATGCAT 1 cut(s) 137
NspI RCATGY 1 cut(s) 1645
OliI CACNNNNGTG 1 cut(s) 1145
PaeI GCATGC 1 cut(s) 1645
PaeR7I CTCGAG 1 cut(s) 1712
PceI AGGCCT 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PctI GAATGC 2 cut(s) 137, 1469
PdmI GAANNNNTTC 1 cut(s) 1222
PfeI GAWTC 8 cut(s) 11, 53, 150, 298, 659, 737, 874, 1169
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 3 cut(s) 829, 1347, 1350
PleI GAGTC 1 cut(s) 1633
PpsI GAGTC 1 cut(s) 1633
PsiI TTATAA 1 cut(s) 69
Psp1406I AACGTT 1 cut(s) 224
PspEI GGTNACC 1 cut(s) 633
PspN4I GGNNCC 4 cut(s) 85, 199, 1399, 1742
PspPI GGNCC 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 941
PsuI RGATCY 1 cut(s) 83
RsaI GTAC 2 cut(s) 564, 1098
RsaNI GTAC 2 cut(s) 563, 1097
RseI CAYNNNNRTG 4 cut(s) 627, 861, 1145, 1572
SaqAI TTAA 2 cut(s) 681, 951
SatI GCNGC 3 cut(s) 828, 1346, 1349
Sau3AI GATC 7 cut(s) 83, 185, 408, 843, 1503, 1519, 1731
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 1634
ScrFI CCNGG 3 cut(s) 285, 286, 1572
SfaNI GCATC 3 cut(s) 1196, 1576, 1752
SfcI CTRYAG 1 cut(s) 933
Sfr274I CTCGAG 1 cut(s) 1712
SinI GGWCC 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 1712
SmaI CCCGGG 1 cut(s) 286
SmiMI CAYNNNNRTG 4 cut(s) 627, 861, 1145, 1572
SmlI CTYRAG 3 cut(s) 6, 325, 1712
SmoI CTYRAG 3 cut(s) 6, 325, 1712
SphI GCATGC 1 cut(s) 1645
Sse9I AATT 7 cut(s) 311, 756, 761, 1133, 1253, 1660, 1773
SseBI AGGCCT 1 cut(s) 213
SsiI CCGC 2 cut(s) 1343, 1349
SspI AATATT 1 cut(s) 701
SspMI CTAG 2 cut(s) 389, 824
StuI AGGCCT 1 cut(s) 213
StyD4I CCNGG 3 cut(s) 283, 284, 1570
StyI CCWWGG 5 cut(s) 193, 432, 640, 1324, 1744
TaaI ACNGT 3 cut(s) 672, 1302, 1499
TaiI ACGT 4 cut(s) 102, 227, 383, 1232
TaqI TCGA 8 cut(s) 24, 153, 600, 690, 1032, 1226, 1593, 1713
TasI AATT 7 cut(s) 311, 756, 761, 1133, 1253, 1660, 1773
TatI WGTACW 1 cut(s) 562
TauI GCSGC 1 cut(s) 1351
TfiI GAWTC 8 cut(s) 11, 53, 150, 298, 659, 737, 874, 1169
Tru1I TTAA 2 cut(s) 681, 951
Tru9I TTAA 2 cut(s) 681, 951
TscAI CASTG 1 cut(s) 1171
TseFI GTSAC 2 cut(s) 633, 1724
TseI GCWGC 2 cut(s) 827, 1345
Tsp45I GTSAC 2 cut(s) 633, 1724
TspDTI ATGAA 9 cut(s) 264, 555, 744, 845, 909, 1080, 1146, 1696, 1757
TspGWI ACGGA 2 cut(s) 438, 700
TspMI CCCGGG 1 cut(s) 284
TspRI CASTG 1 cut(s) 1171
Van91I CCANNNNNTGG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 3 cut(s) 756, 1133, 1253
XceI RCATGY 1 cut(s) 1645
XhoI CTCGAG 1 cut(s) 1712
XmaI CCCGGG 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 583
XmnI GAANNNNTTC 1 cut(s) 1222
XspI CTAG 2 cut(s) 389, 824
Zsp2I ATGCAT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.