AT3G16430

Jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000646
Physical Location & Seq
Forward (+)
5581568 .. 5583258
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16430.1

Sequence Viewer

Length: 891 bp
ATGGCTCAAAAGGTTGAAGCAAAAGGAGGGAAAGGAGGCAACCAATGGGACGATGGATCCGATCATGACGCCGTGACCAAGATTCAGGTTGCAGTAGGCGGAATGGGAATTCAATACATTCAGTTCGATTACGTCAAGAACGGACAAACCGAACAAACTCCTCTTCGTGGTATCAAAGGCAGTACCATTCCAACTGATCCGTTTGTGATTAACCATCCTGAGGAGCATCTAGTTTCTATTGAAATTTGGTATAAACCTGATGGTCTTATTCAAGGGCTTAGGTTCATATCCAACAAAAAGACTTCTCGTTTCATTGGATACGATCGTGGTACTAGATCATTTCTCCAAGTTCAAGACAAGAAGATCATTGGCTTTCATGGGTCTGCCGGAGACAATCTTAATTCTCTTGGAGCTTACTTTGCTCCGTTGACTATCCCATTGACTCCTGCCAAGCCGCTACCGGCACTTGGTAGTGATGATGGAACAGCATGGGATGATGGTGCTTACGTTGGGGTTAAGAAGGTGTACGTAGGACAAGCCCAAGATGGTATATCGGCTGTTAAGTTTGTATACGACAAAAGCCCTGAGGAGGTCACAGGAGAAGAACATGGAAAGAGTACTCTACTCGGATTCGAAGAGTTCGTACTTGACTATCCAAGTGAATACATCATCGCAGTCGAAGGCACCTACGATAAAATCTTTGGGAGTGATGGCTCAGTCATAACTATGCTTAGGTTCAAGACTAATAAGCAAACGTCCCCTCCCTTTGGACTTGAAGCTGGCACTGCCTTCGAACTCAAAGAGGAAGGCCACAAAATCGTTGGCTTCCATGGAAGAGCCGATGCTTTGCTCCACAAAATTGGAGTTCATGTCCGTCCCGTTTCCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

296

Amino Acids

32.23

Weight (kDa)

5.86

Isoelectric Point (pI)

27.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 5 - 139 2.6e-30 Jacalin-like lectin domain
Jacalin PF01419 155 - 290 6.1e-42 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 683
AccI GTMKAC 1 cut(s) 570
AciI CCGC 2 cut(s) 99, 455
AclWI GGATC 3 cut(s) 51, 64, 191
AcsI RAATTY 2 cut(s) 108, 243
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 5 cut(s) 184, 331, 527, 619, 645
AfiI CCNNNNNNNGG 5 cut(s) 167, 220, 467, 589, 767
AgsI TTSAA 7 cut(s) 17, 113, 242, 272, 353, 739, 776
AluBI AGCT 2 cut(s) 413, 779
AluI AGCT 2 cut(s) 413, 779
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 3 cut(s) 51, 64, 191
AoxI GGCC 1 cut(s) 808
ApoI RAATTY 2 cut(s) 108, 243
AsuII TTCGAA 2 cut(s) 633, 792
AxyI CCTNAGG 2 cut(s) 219, 585
BaeI ACNNNNGTAYC 2 cut(s) 310, 343
BamHI GGATCC 1 cut(s) 56
BanI GGYRCC 1 cut(s) 683
BarI GAAGNNNNNNTAC 2 cut(s) 627, 659
BccI CCATC 7 cut(s) 47, 222, 254, 473, 491, 539, 704
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 772, 806
BciVI GTATCC 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 2 cut(s) 230, 333
BfuI GTATCC 1 cut(s) 311
BisI GCNGC 1 cut(s) 455
BlsI GCNGC 1 cut(s) 456
BmcAI AGTACT 1 cut(s) 619
BmiI GGNNCC 2 cut(s) 58, 685
BmsI GCATC 2 cut(s) 235, 832
Bpu10I CCTNAGC 2 cut(s) 278, 731
Bpu14I TTCGAA 2 cut(s) 633, 792
BsaAI YACGTR 1 cut(s) 529
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 829
BsaXI ACNNNNNCTCC 4 cut(s) 745, 775, 855, 885
Bsc4I CCNNNNNNNGG 5 cut(s) 167, 220, 467, 589, 767
Bse118I RCCGGY 1 cut(s) 460
Bse21I CCTNAGG 2 cut(s) 219, 585
BseDI CCNNGG 1 cut(s) 829
BseGI GGATG 2 cut(s) 214, 499
BseLI CCNNNNNNNGG 5 cut(s) 167, 220, 467, 589, 767
BseMII CTCAG 3 cut(s) 210, 576, 729
BseRI GAGGAG 3 cut(s) 150, 236, 602
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 1 cut(s) 810
BshNI GGYRCC 1 cut(s) 683
BsiEI CGRYCG 1 cut(s) 325
BsiSI CCGG 2 cut(s) 387, 461
BslFI GGGAC 3 cut(s) 62, 742, 861
BslI CCNNNNNNNGG 5 cut(s) 167, 220, 467, 589, 767
BsmAI GTCTC 1 cut(s) 384
BsmFI GGGAC 3 cut(s) 62, 742, 861
BsnI GGCC 1 cut(s) 810
Bsp119I TTCGAA 2 cut(s) 633, 792
Bsp143I GATC 6 cut(s) 56, 61, 196, 322, 335, 363
Bsp19I CCATGG 1 cut(s) 829
BspACI CCGC 2 cut(s) 99, 455
BspANI GGCC 1 cut(s) 810
BspCNI CTCAG 3 cut(s) 211, 577, 728
BspHI TCATGA 1 cut(s) 64
BspLI GGNNCC 2 cut(s) 58, 685
BspPI GGATC 3 cut(s) 51, 64, 191
BspQI GCTCTTC 1 cut(s) 829
BspT104I TTCGAA 2 cut(s) 633, 792
BspT107I GGYRCC 1 cut(s) 683
BsrFI RCCGGY 1 cut(s) 460
BssAI RCCGGY 1 cut(s) 460
BssECI CCNNGG 1 cut(s) 829
BssMI GATC 6 cut(s) 56, 61, 196, 322, 335, 363
BssNAI GTATAC 1 cut(s) 571
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 829
Bst1107I GTATAC 1 cut(s) 571
Bst6I CTCTTC 3 cut(s) 168, 630, 829
BstACI GRCGYC 1 cut(s) 69
BstBAI YACGTR 1 cut(s) 529
BstBI TTCGAA 2 cut(s) 633, 792
BstC8I GCNNGC 1 cut(s) 781
BstDEI CTNAG 5 cut(s) 219, 278, 585, 715, 731
BstDSI CCRYGG 1 cut(s) 829
BstF5I GGATG 2 cut(s) 214, 499
BstKTI GATC 6 cut(s) 59, 64, 199, 325, 338, 366
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 6 cut(s) 56, 61, 196, 322, 335, 363
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 2 cut(s) 419, 785
BstSNI TACGTA 1 cut(s) 529
BstX2I RGATCY 1 cut(s) 56
BstXI CCANNNNNNTGG 1 cut(s) 860
BstYI RGATCY 1 cut(s) 56
BstZ17I GTATAC 1 cut(s) 571
Bsu36I CCTNAGG 2 cut(s) 219, 585
BsuI GTATCC 1 cut(s) 311
BsuRI GGCC 1 cut(s) 810
BtgI CCRYGG 1 cut(s) 829
BtgZI GCGATG 1 cut(s) 655
BtsCI GGATG 2 cut(s) 214, 499
BtsI GCAGTG 1 cut(s) 783
BtsIMutI CAGTG 1 cut(s) 783
Cac8I GCNNGC 1 cut(s) 781
CciI TCATGA 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 460
CseI GACGC 1 cut(s) 77
Csp6I GTAC 5 cut(s) 183, 330, 526, 618, 644
CviAII CATG 6 cut(s) 65, 377, 489, 608, 830, 869
CviQI GTAC 5 cut(s) 183, 330, 526, 618, 644
DdeI CTNAG 5 cut(s) 219, 278, 585, 715, 731
DpnI GATC 6 cut(s) 58, 63, 198, 324, 337, 365
DpnII GATC 6 cut(s) 56, 61, 196, 322, 335, 363
Eam1104I CTCTTC 3 cut(s) 168, 630, 829
EarI CTCTTC 3 cut(s) 168, 630, 829
EciI GGCGGA 1 cut(s) 114
Eco105I TACGTA 1 cut(s) 529
Eco130I CCWWGG 1 cut(s) 829
Eco81I CCTNAGG 2 cut(s) 219, 585
EcoRI GAATTC 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 829
ErhI CCWWGG 1 cut(s) 829
FaeI CATG 6 cut(s) 68, 380, 492, 611, 833, 872
FaqI GGGAC 3 cut(s) 62, 742, 861
FatI CATG 6 cut(s) 64, 376, 488, 607, 829, 868
FblI GTMKAC 1 cut(s) 570
Fnu4HI GCNGC 1 cut(s) 455
FokI GGATG 2 cut(s) 201, 506
Fsp4HI GCNGC 1 cut(s) 455
FspBI CTAG 2 cut(s) 230, 333
GluI GCNGC 1 cut(s) 455
HaeIII GGCC 1 cut(s) 810
HapII CCGG 2 cut(s) 387, 461
HgaI GACGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 6 cut(s) 68, 380, 492, 611, 833, 872
HincII GTYRAC 1 cut(s) 429
HindII GTYRAC 1 cut(s) 429
HinfI GANTC 3 cut(s) 82, 442, 630
HpaII CCGG 2 cut(s) 387, 461
Hpy166II GTNNAC 3 cut(s) 429, 526, 571
Hpy188I TCNGA 2 cut(s) 61, 629
Hpy188III TCNNGA 5 cut(s) 65, 136, 218, 353, 739
Hpy8I GTNNAC 3 cut(s) 429, 526, 571
HpyAV CCTTC 4 cut(s) 514, 674, 799, 800
HpyCH4IV ACGT 4 cut(s) 132, 507, 528, 755
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 785
HpyF3I CTNAG 5 cut(s) 219, 278, 585, 715, 731
HpySE526I ACGT 4 cut(s) 132, 507, 528, 755
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 6 cut(s) 68, 380, 492, 611, 833, 872
Kzo9I GATC 6 cut(s) 56, 61, 196, 322, 335, 363
LguI GCTCTTC 1 cut(s) 829
LmnI GCTCC 4 cut(s) 223, 410, 427, 855
LpnPI CCDG 9 cut(s) 71, 231, 270, 400, 459, 474, 582, 597, 765
LweI GCATC 2 cut(s) 235, 832
MaeI CTAG 2 cut(s) 230, 333
MaeII ACGT 4 cut(s) 132, 507, 528, 755
MaeIII GTNAC 2 cut(s) 73, 592
MalI GATC 6 cut(s) 58, 63, 198, 324, 337, 365
MboI GATC 6 cut(s) 56, 61, 196, 322, 335, 363
MboII GAAGA 5 cut(s) 155, 373, 614, 647, 846
MflI RGATCY 1 cut(s) 56
MluCI AATT 4 cut(s) 108, 243, 400, 858
MlyI GAGTC 1 cut(s) 436
MmeI TCCRAC 2 cut(s) 215, 315
MnlI CCTC 8 cut(s) 20, 29, 171, 214, 580, 583, 771, 796
MseI TTAA 4 cut(s) 210, 399, 516, 561
MslI CAYNNNNRTG 1 cut(s) 725
MspI CCGG 2 cut(s) 387, 461
MwoI GCNNNNNNNGC 2 cut(s) 419, 785
NcoI CCATGG 1 cut(s) 829
NdeII GATC 6 cut(s) 56, 61, 196, 322, 335, 363
NlaIII CATG 6 cut(s) 68, 380, 492, 611, 833, 872
NlaIV GGNNCC 2 cut(s) 58, 685
NmuCI GTSAC 2 cut(s) 73, 592
NspV TTCGAA 2 cut(s) 633, 792
PagI TCATGA 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 829
PcsI WCGNNNNNNNCGW 3 cut(s) 57, 147, 639
PfeI GAWTC 2 cut(s) 82, 630
PkrI GCNGC 1 cut(s) 456
Ple19I CGATCG 1 cut(s) 325
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
Ppu21I YACGTR 1 cut(s) 529
PspN4I GGNNCC 2 cut(s) 58, 685
PsuI RGATCY 1 cut(s) 56
PvuI CGATCG 1 cut(s) 325
RsaI GTAC 5 cut(s) 184, 331, 527, 619, 645
RsaNI GTAC 5 cut(s) 183, 330, 526, 618, 644
RseI CAYNNNNRTG 1 cut(s) 725
SapI GCTCTTC 1 cut(s) 829
SaqAI TTAA 4 cut(s) 210, 399, 516, 561
SatI GCNGC 1 cut(s) 455
Sau3AI GATC 6 cut(s) 56, 61, 196, 322, 335, 363
ScaI AGTACT 1 cut(s) 619
SchI GAGTC 1 cut(s) 436
SfaNI GCATC 2 cut(s) 235, 832
SfuI TTCGAA 2 cut(s) 633, 792
SmiMI CAYNNNNRTG 1 cut(s) 725
SnaBI TACGTA 1 cut(s) 529
Sse9I AATT 4 cut(s) 108, 243, 400, 858
SsiI CCGC 2 cut(s) 99, 455
SspMI CTAG 2 cut(s) 230, 333
StyI CCWWGG 1 cut(s) 829
TaiI ACGT 4 cut(s) 135, 510, 531, 758
TaqI TCGA 4 cut(s) 126, 633, 678, 792
TasI AATT 4 cut(s) 108, 243, 400, 858
TatI WGTACW 1 cut(s) 617
TauI GCSGC 1 cut(s) 457
TfiI GAWTC 2 cut(s) 82, 630
Tru1I TTAA 4 cut(s) 210, 399, 516, 561
Tru9I TTAA 4 cut(s) 210, 399, 516, 561
TscAI CASTG 1 cut(s) 790
TseFI GTSAC 2 cut(s) 73, 592
Tsp45I GTSAC 2 cut(s) 73, 592
TspDTI ATGAA 4 cut(s) 274, 301, 365, 857
TspGWI ACGGA 4 cut(s) 156, 189, 414, 863
TspRI CASTG 1 cut(s) 790
XapI RAATTY 2 cut(s) 108, 243
XcmI CCANNNNNNNNNTGG 2 cut(s) 50, 818
XmiI GTMKAC 1 cut(s) 570
XspI CTAG 2 cut(s) 230, 333
ZrmI AGTACT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.