AT5G35950

jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000646
Physical Location & Seq
Forward (+)
14104943 .. 14106764
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35950.1

Sequence Viewer

Length: 1335 bp
ATGGCACTAATGGTGAAAGCTGAAGGTGGAAATGGAGGGAAGCGATGGGATGATGGATTCGATTATGAGGGTGTAACAAAGATATATGTACGAGGAGGTCTTGAAGGCATTCAGTTCATCAAGTTTGACTATGTCAAAGATGGTAAAACTATTACTGGACCAATTCATGGTGTCTCTGGTCGTGGTTTGACACAAACGTTTGAGATTAACCATTTGCAAAAGGAATATCTGTTATCTATTGAGGGTTACTATGACATATCTACCGGTGTGATTCAATCAATCCAATTCAAAACTAACCAGCAAACTTCTGATATGATGGGGTTCAACGAGGGTACTAAGTTTTCACTAAGATCCATGAGGGGTAGAATCATTGGGTTTCATGGATTTGCTGACAAGAATCTCTACTCTCTTAGAGCATATTACATTAGGATCCCCGCAACCAAATCTGCAATGGATGGTGGTCAAAACACAGGAAGAGGTTATGATCATGGTGGTGACTATGATGGTGTCAGAAAAGTGTATGTTACTTTTGATGGCACTTCAATAAGGAATATGAGGGTCGACTATGACAAAGTTGGTCAAGTGGAATGCTATGAGTATGGGGTCAAGATCGGAACACAAAATCAGTTTACCATCAATTATCCATATGAATGTATCACATCCGTAGGAGGAAGCTACGCGGATACCCAACCTTACAGATGTATTGTCCTTAGGTCGTTAACATTCAAAACATCAAATGGGAGAACGTCAGTATTTGGAAAAGAAACGGGTACCACGTTCTTGCTTGAGAGCCAAGGCAATGCTATTGTTGGGTTCCATGGACGGGTAGGGTCTTGTGTTGATAGTATCGGGGAATATTATGCTCCATTTTCTCCTTACCCTCCCCCTACTGAGAAACTAGAGGGACAAGGTGGAGATGGAGGAGACTCTTGGGACGATGGTGCTTTCCTAAATGTGAAGAAGGTTTGTATAGGACAAGGCCAGTTTGGTATTGTCTCCGTTAAGTTTGAGTACGAGAACGACGCTAGTGAGGTGGTTGTGGGAGATGAACATGGAAAGGCTACATTACTTGGATATGAAGAGTTCGAACTGGATTATCCGAGTGAATACATAACATCGGTGGAGGCTTGCCAAGATAAGGTTATGGGAGCTGAAACTGGAGTATTAACGATGCTTAGGTTCAAGACAAACATTCGCATCTCTCCATCCTTTGGACTTAAAGCTGGTTTCAACTTCGTCCTAGAGAAGGAAGGTCACAAGATCAATGGGTTCCATGGAAAATCTAGTAGCATGCTTCATCAGATTGGGATCCATGTCATTCCCATCACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

444

Amino Acids

49.02

Weight (kDa)

5.77

Isoelectric Point (pI)

25.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 6 - 140 1.7e-34 Jacalin-like lectin domain
Jacalin PF01419 154 - 286 2.1e-28 Jacalin-like lectin domain
Jacalin PF01419 302 - 438 2e-35 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 770
AccB1I GGYRCC 1 cut(s) 770
AccB7I CCANNNNNTGG 2 cut(s) 167, 1211
AccI GTMKAC 1 cut(s) 561
AccII CGCG 1 cut(s) 680
AciI CCGC 2 cut(s) 435, 680
AclI AACGTT 1 cut(s) 197
AclWI GGATC 5 cut(s) 345, 424, 437, 1303, 1316
AcuI CTGAAG 1 cut(s) 42
AdeI CACNNNGTG 1 cut(s) 1332
AfaI GTAC 4 cut(s) 90, 334, 772, 1013
AfiI CCNNNNNNNGG 5 cut(s) 167, 823, 1138, 1211, 1246
AgeI ACCGGT 1 cut(s) 263
AgsI TTSAA 8 cut(s) 104, 275, 289, 325, 543, 727, 1183, 1231
AluBI AGCT 4 cut(s) 20, 675, 1151, 1223
AluI AGCT 4 cut(s) 20, 675, 1151, 1223
Alw26I GTCTC 3 cut(s) 178, 918, 1000
AlwI GGATC 5 cut(s) 345, 424, 437, 1303, 1316
AoxI GGCC 1 cut(s) 979
AsiGI ACCGGT 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 108
Asp718I GGTACC 1 cut(s) 770
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 25, 506
AsuII TTCGAA 1 cut(s) 1086
AvaII GGWCC 1 cut(s) 158
AxyI CCTNAGG 1 cut(s) 710
BamHI GGATCC 2 cut(s) 429, 1308
BanI GGYRCC 1 cut(s) 770
BciVI GTATCC 1 cut(s) 676
BclI TGATCA 1 cut(s) 484
BcoDI GTCTC 3 cut(s) 178, 918, 1000
BfaI CTAG 4 cut(s) 899, 1026, 1241, 1284
BfuI GTATCC 1 cut(s) 676
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 5 cut(s) 431, 772, 815, 1271, 1310
BmsI GCATC 2 cut(s) 1161, 1206
BpmI CTGGAG 1 cut(s) 1179
Bpu10I CCTNAGC 1 cut(s) 1175
Bpu14I TTCGAA 1 cut(s) 1086
BpuEI CTTGAG 1 cut(s) 806
BsaBI GATNNNNATC 1 cut(s) 1307
BsaJI CCNNGG 3 cut(s) 793, 817, 1273
BsaWI WCCGGW 1 cut(s) 263
Bsc4I CCNNNNNNNGG 5 cut(s) 167, 823, 1138, 1211, 1246
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 4 cut(s) 160, 982, 1095, 1162
Bse21I CCTNAGG 1 cut(s) 710
Bse3DI GCAATG 2 cut(s) 456, 805
Bse8I GATNNNNATC 1 cut(s) 1307
BseDI CCNNGG 3 cut(s) 793, 817, 1273
BseGI GGATG 4 cut(s) 55, 460, 659, 1205
BseJI GATNNNNATC 1 cut(s) 1307
BseLI CCNNNNNNNGG 5 cut(s) 167, 823, 1138, 1211, 1246
BseMI GCAATG 2 cut(s) 456, 805
BseMII CTCAG 2 cut(s) 882, 1320
BseNI ACTGG 4 cut(s) 160, 982, 1095, 1162
BseRI GAGGAG 2 cut(s) 108, 936
Bsh1236I CGCG 1 cut(s) 680
BshFI GGCC 1 cut(s) 981
BshNI GGYRCC 1 cut(s) 770
BshTI ACCGGT 1 cut(s) 263
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 2 cut(s) 918, 947
BslI CCNNNNNNNGG 5 cut(s) 167, 823, 1138, 1211, 1246
BsmAI GTCTC 3 cut(s) 178, 918, 1000
BsmFI GGGAC 2 cut(s) 918, 947
BsmI GAATGC 2 cut(s) 108, 593
BsnI GGCC 1 cut(s) 981
Bsp119I TTCGAA 1 cut(s) 1086
Bsp143I GATC 6 cut(s) 350, 429, 484, 609, 1260, 1308
Bsp19I CCATGG 2 cut(s) 817, 1273
BspACI CCGC 2 cut(s) 435, 680
BspANI GGCC 1 cut(s) 981
BspCNI CTCAG 2 cut(s) 883, 1321
BspFNI CGCG 1 cut(s) 680
BspLI GGNNCC 5 cut(s) 431, 772, 815, 1271, 1310
BspPI GGATC 5 cut(s) 345, 424, 437, 1303, 1316
BspT104I TTCGAA 1 cut(s) 1086
BspT107I GGYRCC 1 cut(s) 770
BsrDI GCAATG 2 cut(s) 456, 805
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 4 cut(s) 160, 982, 1095, 1162
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 3 cut(s) 793, 817, 1273
BssMI GATC 6 cut(s) 350, 429, 484, 609, 1260, 1308
BssT1I CCWWGG 3 cut(s) 793, 817, 1273
Bst6I CTCTTC 2 cut(s) 469, 1074
BstBI TTCGAA 1 cut(s) 1086
BstC8I GCNNGC 2 cut(s) 1129, 1292
BstDEI CTNAG 7 cut(s) 336, 347, 410, 710, 891, 1175, 1329
BstDSI CCRYGG 2 cut(s) 817, 1273
BstENI CCTNNNNNAGG 1 cut(s) 1244
BstF5I GGATG 4 cut(s) 55, 460, 659, 1205
BstFNI CGCG 1 cut(s) 680
BstKTI GATC 6 cut(s) 353, 432, 487, 612, 1263, 1311
BstMAI GTCTC 3 cut(s) 178, 918, 1000
BstMBI GATC 6 cut(s) 350, 429, 484, 609, 1260, 1308
BstNSI RCATGY 1 cut(s) 1294
BstUI CGCG 1 cut(s) 680
BstX2I RGATCY 3 cut(s) 350, 429, 1308
BstYI RGATCY 3 cut(s) 350, 429, 1308
Bsu36I CCTNAGG 1 cut(s) 710
BsuI GTATCC 1 cut(s) 676
BsuRI GGCC 1 cut(s) 981
BtgI CCRYGG 2 cut(s) 817, 1273
BtgZI GCGATG 1 cut(s) 58
BtsCI GGATG 4 cut(s) 55, 460, 659, 1205
BtsIMutI CAGTG 1 cut(s) 1326
Cac8I GCNNGC 2 cut(s) 1129, 1292
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 158
CseI GACGC 1 cut(s) 1031
Csp6I GTAC 4 cut(s) 89, 333, 771, 1012
CspAI ACCGGT 1 cut(s) 263
CviAII CATG 9 cut(s) 167, 355, 380, 488, 818, 1052, 1274, 1291, 1313
CviJI RGCY 8 cut(s) 20, 675, 792, 981, 1061, 1127, 1151, 1223
CviKI_1 RGCY 8 cut(s) 20, 675, 792, 981, 1061, 1127, 1151, 1223
CviQI GTAC 4 cut(s) 89, 333, 771, 1012
DdeI CTNAG 7 cut(s) 336, 347, 410, 710, 891, 1175, 1329
DpnI GATC 6 cut(s) 352, 431, 486, 611, 1262, 1310
DpnII GATC 6 cut(s) 350, 429, 484, 609, 1260, 1308
DraIII CACNNNGTG 1 cut(s) 1332
Eam1104I CTCTTC 2 cut(s) 469, 1074
EarI CTCTTC 2 cut(s) 469, 1074
Eco130I CCWWGG 3 cut(s) 793, 817, 1273
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 42
Eco81I CCTNAGG 1 cut(s) 710
EcoNI CCTNNNNNAGG 1 cut(s) 1244
EcoT14I CCWWGG 3 cut(s) 793, 817, 1273
ErhI CCWWGG 3 cut(s) 793, 817, 1273
FaeI CATG 9 cut(s) 170, 358, 383, 491, 821, 1055, 1277, 1294, 1316
FaqI GGGAC 2 cut(s) 918, 947
FatI CATG 9 cut(s) 166, 354, 379, 487, 817, 1051, 1273, 1290, 1312
FauI CCCGC 1 cut(s) 442
FauNDI CATATG 1 cut(s) 646
FbaI TGATCA 1 cut(s) 484
FblI GTMKAC 1 cut(s) 561
FokI GGATG 4 cut(s) 62, 467, 646, 1192
FspBI CTAG 4 cut(s) 899, 1026, 1241, 1284
GsuI CTGGAG 1 cut(s) 1179
HaeIII GGCC 1 cut(s) 981
HapII CCGG 1 cut(s) 264
HgaI GACGC 1 cut(s) 1031
Hin1II CATG 9 cut(s) 170, 358, 383, 491, 821, 1055, 1277, 1294, 1316
HincII GTYRAC 2 cut(s) 562, 720
HindII GTYRAC 2 cut(s) 562, 720
HinfI GANTC 5 cut(s) 57, 271, 366, 397, 926
HpaI GTTAAC 1 cut(s) 720
HpaII CCGG 1 cut(s) 264
HphI GGTGA 2 cut(s) 25, 506
Hpy166II GTNNAC 3 cut(s) 562, 630, 720
Hpy188I TCNGA 5 cut(s) 310, 512, 614, 1101, 1302
Hpy188III TCNNGA 3 cut(s) 101, 607, 1183
Hpy8I GTNNAC 3 cut(s) 562, 630, 720
Hpy99I CGWCG 1 cut(s) 1025
HpyAV CCTTC 5 cut(s) 17, 98, 955, 1240, 1244
HpyCH4IV ACGT 3 cut(s) 197, 746, 776
HpyCH4V TGCA 2 cut(s) 217, 449
HpyF3I CTNAG 7 cut(s) 336, 347, 410, 710, 891, 1175, 1329
HpySE526I ACGT 3 cut(s) 197, 746, 776
Hsp92II CATG 9 cut(s) 170, 358, 383, 491, 821, 1055, 1277, 1294, 1316
KpnI GGTACC 1 cut(s) 774
Ksp22I TGATCA 1 cut(s) 484
KspAI GTTAAC 1 cut(s) 720
Kzo9I GATC 6 cut(s) 350, 429, 484, 609, 1260, 1308
LmnI GCTCC 2 cut(s) 868, 1148
LpnPI CCDG 9 cut(s) 141, 162, 277, 311, 456, 995, 1076, 1143, 1209
LweI GCATC 2 cut(s) 1161, 1206
MaeI CTAG 4 cut(s) 899, 1026, 1241, 1284
MaeII ACGT 3 cut(s) 197, 746, 776
MaeIII GTNAC 5 cut(s) 73, 245, 494, 523, 1253
MalI GATC 6 cut(s) 352, 431, 486, 611, 1262, 1310
MboI GATC 6 cut(s) 350, 429, 484, 609, 1260, 1308
MboII GAAGA 3 cut(s) 486, 970, 1091
MflI RGATCY 3 cut(s) 350, 429, 1308
MluCI AATT 3 cut(s) 162, 284, 637
MlyI GAGTC 1 cut(s) 920
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 5 cut(s) 207, 719, 1002, 1166, 1218
MslI CAYNNNNRTG 2 cut(s) 492, 649
MspI CCGG 1 cut(s) 264
Mva1269I GAATGC 2 cut(s) 108, 593
MvnI CGCG 1 cut(s) 680
NcoI CCATGG 2 cut(s) 817, 1273
NdeI CATATG 1 cut(s) 646
NdeII GATC 6 cut(s) 350, 429, 484, 609, 1260, 1308
NlaIII CATG 9 cut(s) 170, 358, 383, 491, 821, 1055, 1277, 1294, 1316
NlaIV GGNNCC 5 cut(s) 431, 772, 815, 1271, 1310
NmuCI GTSAC 2 cut(s) 494, 1253
NspI RCATGY 1 cut(s) 1294
NspV TTCGAA 1 cut(s) 1086
PaeI GCATGC 1 cut(s) 1294
PcsI WCGNNNNNNNCGW 1 cut(s) 773
PctI GAATGC 2 cut(s) 108, 593
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 4 cut(s) 57, 271, 366, 397
PflFI GACNNNGTC 1 cut(s) 131
PflMI CCANNNNNTGG 2 cut(s) 167, 1211
PinAI ACCGGT 1 cut(s) 263
PleI GAGTC 1 cut(s) 920
PpsI GAGTC 1 cut(s) 920
Psp1406I AACGTT 1 cut(s) 197
PspN4I GGNNCC 5 cut(s) 431, 772, 815, 1271, 1310
PspPI GGNCC 1 cut(s) 158
PsuI RGATCY 3 cut(s) 350, 429, 1308
PsyI GACNNNGTC 1 cut(s) 131
RsaI GTAC 4 cut(s) 90, 334, 772, 1013
RsaNI GTAC 4 cut(s) 89, 333, 771, 1012
RseI CAYNNNNRTG 2 cut(s) 492, 649
SalI GTCGAC 1 cut(s) 560
SaqAI TTAA 5 cut(s) 207, 719, 1002, 1166, 1218
Sau3AI GATC 6 cut(s) 350, 429, 484, 609, 1260, 1308
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 920
SfaNI GCATC 2 cut(s) 1161, 1206
SfuI TTCGAA 1 cut(s) 1086
SinI GGWCC 1 cut(s) 158
SmiMI CAYNNNNRTG 2 cut(s) 492, 649
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
SphI GCATGC 1 cut(s) 1294
Sse9I AATT 3 cut(s) 162, 284, 637
SsiI CCGC 2 cut(s) 435, 680
SspI AATATT 1 cut(s) 857
SspMI CTAG 4 cut(s) 899, 1026, 1241, 1284
StyI CCWWGG 3 cut(s) 793, 817, 1273
TaiI ACGT 3 cut(s) 200, 749, 779
TaqI TCGA 3 cut(s) 60, 561, 1086
TasI AATT 3 cut(s) 162, 284, 637
TfiI GAWTC 4 cut(s) 57, 271, 366, 397
Tru1I TTAA 5 cut(s) 207, 719, 1002, 1166, 1218
Tru9I TTAA 5 cut(s) 207, 719, 1002, 1166, 1218
TscAI CASTG 1 cut(s) 1333
TseFI GTSAC 2 cut(s) 494, 1253
Tsp45I GTSAC 2 cut(s) 494, 1253
TspDTI ATGAA 7 cut(s) 106, 155, 368, 663, 1062, 1092, 1286
TspGWI ACGGA 2 cut(s) 652, 988
TspRI CASTG 1 cut(s) 1333
Tth111I GACNNNGTC 1 cut(s) 131
Van91I CCANNNNNTGG 2 cut(s) 167, 1211
VpaK11BI GGWCC 1 cut(s) 158
XagI CCTNNNNNAGG 1 cut(s) 1244
XceI RCATGY 1 cut(s) 1294
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XmiI GTMKAC 1 cut(s) 561
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 4 cut(s) 899, 1026, 1241, 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.