AT2G39310

jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000646
Physical Location & Seq
Reverse (-)
16414034 .. 16416845
2812 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39310.2

Sequence Viewer

Length: 1377 bp
ATGGCGAAGATGTACCGGAAGTTGGCACTCTGCGGTGGTGAGGGAGGACAAGAATGGGACGACGATGTATATGAGGGTGTAAGAAAAGTGTATGTAGGGCAAGATCTCAACCGTATCACTTACATCAAGTTTGAGTACGTGCAGGAAGACGGCGAAGTAGTAACAACTGAATATGGGACAACAAATCAGCACCCTAAAGAGTTTGTAATTCAATACCCGGACGAACACATCATAGCAGTGGAGGGAAGTTACCACCAAGTGGCTCTCATTGCCACAGAGGTGATTACGTCCCTCGTCTTCAAGACCTCAAAGGGTAGAAAGTCTCCATTGTTTGGTCCAAACTTACTTGGAATTACGACCGGTACAAAGTTTGTTTTTGAGGATGAGGGAAAGAAGATCGTAGGGTTTCATGGACGGGCAGGTGATGCTGTCGACGCTCTTGGAGTTTACTTTGTATTGGATACCACGCCGTTCCCTCTTTACAAGCTTGATGCCCAAGGTGGTACAGACGGGCGTGTTTGGGATGATGGTTCTTACGATGGCATTAAAACGCTGCGTATTGATCAAGATAATTCTCGTATCACTTATTTAGAGGTTGAGTACGAGAAAGACGGGGAAGCAAAAACATGTAACCATGGGGGGAAAGGAGATACACCATCCGAGTTTGTGCTTGGTTACCCAGATGAATACATCAAATCGGTGGAAGCAACCTATCAGAAGCCAAACATTTTTAGCAATACGGCAATTACGTCACTTAAGTTCTTAACATCAAAGGGGAGAACATCATTCTTTGGGTATAATGTGGGTAAGAAGTTTGTGTTGGAGCAAAAGGGTCATAGGCTTGTCGGGTTCCATGGAAAGGAAGATGCAGCTATTGATGCTCTTGGAGCATATTTTGGACCTGTTCCTACTCCTACTCCCTTGATTCCATCTAAGAAACTACCAGCGATAGGCGGCAACGAAGGAGTTACATGGGATGATGGTGTCTACGACGGTGTAAGGAAGATACTTGTAGGACAAGGTAACGATGGTGTATCCTTTGTCAAATTTGAGTACAGTAAGGGCAAAGACCTTGTACCCGGAGATGACCATGGGAAGAAGACATTACTCGGAGCTGAAGAGTTTGTGCTTGAAGATGGTGAATATCTCATGAACATAGATGGCTACTACGATAAGATCTTCGGAGTTGAGGAACCAATAATTGTATGTCTTCAGTTTAAGACCAACAAAAGGGAGTCAATGCCGTTTGGAATGGATTCTGGTAAGAAGTTCTCGCTTGGAGAGGAAGGCCACAAGATCGTTGGATTCCATGGACAAGCTAGTGATGTTGTTCACAGCATCGGAGTCACTATCGTGCCCATCACCACCACCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0009506 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

458

Amino Acids

50.46

Weight (kDa)

5.15

Isoelectric Point (pI)

20.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 10 - 104 2.9e-21 Jacalin-like lectin domain
Jacalin PF01419 134 - 268 6.2e-35 Jacalin-like lectin domain
Jacalin PF01419 286 - 419 3.1e-38 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 410
Acc36I ACCTGC 1 cut(s) 410
AccB7I CCANNNNNTGG 2 cut(s) 259, 332
AccI GTMKAC 2 cut(s) 432, 987
AciI CCGC 2 cut(s) 33, 954
AcsI RAATTY 1 cut(s) 1046
AcuI CTGAAG 2 cut(s) 1137, 1196
AdeI CACNNNGTG 2 cut(s) 259, 1374
AfaI GTAC 7 cut(s) 14, 137, 364, 505, 602, 1055, 1077
AfiI CCNNNNNNNGG 6 cut(s) 22, 259, 332, 859, 950, 1230
AflII CTTAAG 1 cut(s) 755
AflIII ACRYGT 1 cut(s) 626
AgeI ACCGGT 1 cut(s) 359
AgsI TTSAA 3 cut(s) 212, 301, 1133
AjuI GAANNNNNNNTTGG 2 cut(s) 803, 835
AleI CACNNNNGTG 2 cut(s) 278, 1352
AluBI AGCT 4 cut(s) 487, 872, 1115, 1319
AluI AGCT 4 cut(s) 487, 872, 1115, 1319
Alw26I GTCTC 1 cut(s) 327
AoxI GGCC 1 cut(s) 1288
ApeKI GCWGC 2 cut(s) 553, 869
ApoI RAATTY 1 cut(s) 1046
AsiGI ACCGGT 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 1255
AspS9I GGNCC 2 cut(s) 335, 899
AsuC2I CCSGG 2 cut(s) 218, 1080
AsuHPI GGTGA 5 cut(s) 50, 292, 434, 1151, 1354
AvaII GGWCC 2 cut(s) 335, 899
BaeGI GKGCMC 1 cut(s) 1359
BbsI GAAGAC 4 cut(s) 153, 289, 1106, 1202
BbvI GCAGC 2 cut(s) 540, 881
BccI CCATC 9 cut(s) 521, 533, 664, 937, 974, 1022, 1130, 1154, 1367
BceAI ACGGC 4 cut(s) 166, 454, 756, 1228
BciVI GTATCC 2 cut(s) 454, 1045
BclI TGATCA 1 cut(s) 562
BcnI CCSGG 2 cut(s) 218, 1080
BcoDI GTCTC 1 cut(s) 327
BfaI CTAG 1 cut(s) 1320
BfrI CTTAAG 1 cut(s) 755
BfuAI ACCTGC 1 cut(s) 410
BfuI GTATCC 2 cut(s) 454, 1045
BglII AGATCT 2 cut(s) 103, 1176
BisI GCNGC 3 cut(s) 554, 870, 955
BlsI GCNGC 3 cut(s) 555, 871, 956
Bme1390I CCNGG 2 cut(s) 218, 1080
Bme18I GGWCC 2 cut(s) 335, 899
BmgT120I GGNCC 2 cut(s) 335, 899
BmiI GGNNCC 2 cut(s) 851, 1194
BmrFI CCNGG 2 cut(s) 218, 1080
BmsI GCATC 5 cut(s) 415, 481, 856, 868, 1347
BpiI GAAGAC 4 cut(s) 153, 289, 1106, 1202
BpuMI CCSGG 2 cut(s) 218, 1080
BsaAI YACGTR 1 cut(s) 139
BsaJI CCNNGG 5 cut(s) 496, 634, 853, 1090, 1309
BsaWI WCCGGW 2 cut(s) 15, 359
BsaXI ACNNNNNCTCC 2 cut(s) 901, 931
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 259, 332, 859, 950, 1230
Bse118I RCCGGY 1 cut(s) 359
Bse3DI GCAATG 1 cut(s) 267
BseDI CCNNGG 5 cut(s) 496, 634, 853, 1090, 1309
BseGI GGATG 4 cut(s) 388, 529, 656, 982
BseLI CCNNNNNNNGG 6 cut(s) 22, 259, 332, 859, 950, 1230
BseMI GCAATG 1 cut(s) 267
BseSI GKGCMC 1 cut(s) 1359
BseXI GCAGC 2 cut(s) 540, 881
BsgI GTGCAG 1 cut(s) 161
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 1 cut(s) 1290
BshTI ACCGGT 1 cut(s) 359
BsiEI CGRYCG 1 cut(s) 360
BsiSI CCGG 4 cut(s) 16, 218, 360, 1080
BslFI GGGAC 3 cut(s) 71, 190, 274
BslI CCNNNNNNNGG 6 cut(s) 22, 259, 332, 859, 950, 1230
BsmAI GTCTC 1 cut(s) 327
BsmFI GGGAC 3 cut(s) 71, 190, 274
BsnI GGCC 1 cut(s) 1290
Bsp1286I GDGCHC 1 cut(s) 1359
Bsp143I GATC 5 cut(s) 103, 396, 562, 1176, 1296
Bsp19I CCATGG 4 cut(s) 634, 853, 1090, 1309
BspACI CCGC 2 cut(s) 33, 954
BspANI GGCC 1 cut(s) 1290
BspHI TCATGA 1 cut(s) 1149
BspLI GGNNCC 2 cut(s) 851, 1194
BspMI ACCTGC 1 cut(s) 410
BspTI CTTAAG 1 cut(s) 755
BsrDI GCAATG 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 359
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 5 cut(s) 496, 634, 853, 1090, 1309
BssMI GATC 5 cut(s) 103, 396, 562, 1176, 1296
BssT1I CCWWGG 5 cut(s) 496, 634, 853, 1090, 1309
Bst4CI ACNGT 3 cut(s) 113, 995, 1058
Bst6I CTCTTC 1 cut(s) 1113
BstAFI CTTAAG 1 cut(s) 755
BstAPI GCANNNNNTGC 1 cut(s) 425
BstBAI YACGTR 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 933
BstDSI CCRYGG 4 cut(s) 634, 853, 1090, 1309
BstEII GGTNACC 1 cut(s) 674
BstF5I GGATG 4 cut(s) 388, 529, 656, 982
BstKTI GATC 5 cut(s) 106, 399, 565, 1179, 1299
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 5 cut(s) 103, 396, 562, 1176, 1296
BstMCI CGRYCG 1 cut(s) 360
BstMWI GCNNNNNNNGC 5 cut(s) 269, 425, 434, 878, 887
BstNSI RCATGY 1 cut(s) 630
BstPI GGTNACC 1 cut(s) 674
BstSCI CCNGG 2 cut(s) 216, 1078
BstSLI GKGCMC 1 cut(s) 1359
BstV1I GCAGC 2 cut(s) 540, 881
BstV2I GAAGAC 4 cut(s) 153, 289, 1106, 1202
BstX2I RGATCY 2 cut(s) 103, 1176
BstYI RGATCY 2 cut(s) 103, 1176
BsuI GTATCC 2 cut(s) 454, 1045
BsuRI GGCC 1 cut(s) 1290
BtgI CCRYGG 4 cut(s) 634, 853, 1090, 1309
BtsCI GGATG 4 cut(s) 388, 529, 656, 982
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 243
BveI ACCTGC 1 cut(s) 410
CciI TCATGA 1 cut(s) 1149
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 2 cut(s) 335, 899
CseI GACGC 1 cut(s) 443
Csp6I GTAC 7 cut(s) 13, 136, 363, 504, 601, 1054, 1076
CspAI ACCGGT 1 cut(s) 359
CviAII CATG 8 cut(s) 410, 627, 635, 854, 972, 1091, 1150, 1310
CviJI RGCY 9 cut(s) 263, 487, 721, 841, 872, 1115, 1164, 1290, 1319
CviKI_1 RGCY 9 cut(s) 263, 487, 721, 841, 872, 1115, 1164, 1290, 1319
CviQI GTAC 7 cut(s) 13, 136, 363, 504, 601, 1054, 1076
DdeI CTNAG 1 cut(s) 933
DpnI GATC 5 cut(s) 105, 398, 564, 1178, 1298
DpnII GATC 5 cut(s) 103, 396, 562, 1176, 1296
DraIII CACNNNGTG 2 cut(s) 259, 1374
Eam1104I CTCTTC 1 cut(s) 1113
EarI CTCTTC 1 cut(s) 1113
Eco130I CCWWGG 5 cut(s) 496, 634, 853, 1090, 1309
Eco47I GGWCC 2 cut(s) 335, 899
Eco57I CTGAAG 2 cut(s) 1137, 1196
Eco91I GGTNACC 1 cut(s) 674
EcoO65I GGTNACC 1 cut(s) 674
EcoT14I CCWWGG 5 cut(s) 496, 634, 853, 1090, 1309
ErhI CCWWGG 5 cut(s) 496, 634, 853, 1090, 1309
FaeI CATG 8 cut(s) 413, 630, 638, 857, 975, 1094, 1153, 1313
FaqI GGGAC 3 cut(s) 71, 190, 274
FatI CATG 8 cut(s) 409, 626, 634, 853, 971, 1090, 1149, 1309
FbaI TGATCA 1 cut(s) 562
FblI GTMKAC 2 cut(s) 432, 987
Fnu4HI GCNGC 3 cut(s) 554, 870, 955
FokI GGATG 4 cut(s) 395, 536, 643, 989
Fsp4HI GCNGC 3 cut(s) 554, 870, 955
FspBI CTAG 1 cut(s) 1320
GluI GCNGC 3 cut(s) 554, 870, 955
HaeIII GGCC 1 cut(s) 1290
HapII CCGG 4 cut(s) 16, 218, 360, 1080
HgaI GACGC 1 cut(s) 443
Hin1II CATG 8 cut(s) 413, 630, 638, 857, 975, 1094, 1153, 1313
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 5 cut(s) 925, 1235, 1256, 1305, 1344
HpaII CCGG 4 cut(s) 16, 218, 360, 1080
HphI GGTGA 5 cut(s) 50, 292, 434, 1151, 1354
Hpy166II GTNNAC 4 cut(s) 433, 448, 988, 1333
Hpy188I TCNGA 5 cut(s) 661, 717, 1112, 1184, 1343
Hpy188III TCNNGA 3 cut(s) 301, 566, 1150
Hpy8I GTNNAC 4 cut(s) 433, 448, 988, 1333
Hpy99I CGWCG 3 cut(s) 65, 437, 995
HpyAV CCTTC 2 cut(s) 956, 1280
HpyCH4III ACNGT 3 cut(s) 113, 995, 1058
HpyCH4IV ACGT 3 cut(s) 138, 287, 749
HpyCH4V TGCA 2 cut(s) 142, 869
HpyF10VI GCNNNNNNNGC 5 cut(s) 269, 425, 434, 878, 887
HpyF3I CTNAG 1 cut(s) 933
HpySE526I ACGT 3 cut(s) 138, 287, 749
Hsp92II CATG 8 cut(s) 413, 630, 638, 857, 975, 1094, 1153, 1313
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 5 cut(s) 103, 396, 562, 1176, 1296
LmnI GCTCC 3 cut(s) 823, 887, 1112
Lsp1109I GCAGC 2 cut(s) 540, 881
LweI GCATC 5 cut(s) 415, 481, 856, 868, 1347
MaeI CTAG 1 cut(s) 1320
MaeII ACGT 3 cut(s) 138, 287, 749
MaeIII GTNAC 8 cut(s) 160, 248, 629, 674, 750, 967, 1022, 1345
MalI GATC 5 cut(s) 105, 398, 564, 1178, 1298
MboI GATC 5 cut(s) 103, 396, 562, 1176, 1296
MflI RGATCY 2 cut(s) 103, 1176
MhlI GDGCHC 1 cut(s) 1359
MluCI AATT 6 cut(s) 207, 351, 571, 744, 1046, 1200
MlyI GAGTC 2 cut(s) 1244, 1353
MmeI TCCRAC 2 cut(s) 801, 1282
MroXI GAANNNNTTC 1 cut(s) 1255
MseI TTAA 4 cut(s) 546, 756, 764, 1218
MslI CAYNNNNRTG 3 cut(s) 236, 278, 1352
MspCI CTTAAG 1 cut(s) 755
MspI CCGG 4 cut(s) 16, 218, 360, 1080
MspR9I CCNGG 2 cut(s) 218, 1080
MwoI GCNNNNNNNGC 5 cut(s) 269, 425, 434, 878, 887
NciI CCSGG 2 cut(s) 218, 1080
NcoI CCATGG 4 cut(s) 634, 853, 1090, 1309
NdeII GATC 5 cut(s) 103, 396, 562, 1176, 1296
NlaIII CATG 8 cut(s) 413, 630, 638, 857, 975, 1094, 1153, 1313
NlaIV GGNNCC 2 cut(s) 851, 1194
NmuCI GTSAC 2 cut(s) 750, 1345
NspI RCATGY 1 cut(s) 630
OliI CACNNNNGTG 2 cut(s) 278, 1352
PagI TCATGA 1 cut(s) 1149
PaqCI CACCTGC 1 cut(s) 410
PciI ACATGT 1 cut(s) 626
PcsI WCGNNNNNNNCGW 1 cut(s) 746
PdmI GAANNNNTTC 1 cut(s) 1255
PfeI GAWTC 3 cut(s) 925, 1256, 1305
PflMI CCANNNNNTGG 2 cut(s) 259, 332
PinAI ACCGGT 1 cut(s) 359
PkrI GCNGC 3 cut(s) 555, 871, 956
PleI GAGTC 2 cut(s) 1243, 1352
PpsI GAGTC 2 cut(s) 1243, 1352
Ppu21I YACGTR 1 cut(s) 139
PscI ACATGT 1 cut(s) 626
PspEI GGTNACC 1 cut(s) 674
PspN4I GGNNCC 2 cut(s) 851, 1194
PspPI GGNCC 2 cut(s) 335, 899
PsuI RGATCY 2 cut(s) 103, 1176
RsaI GTAC 7 cut(s) 14, 137, 364, 505, 602, 1055, 1077
RsaNI GTAC 7 cut(s) 13, 136, 363, 504, 601, 1054, 1076
RseI CAYNNNNRTG 3 cut(s) 236, 278, 1352
SalI GTCGAC 1 cut(s) 431
SaqAI TTAA 4 cut(s) 546, 756, 764, 1218
SatI GCNGC 3 cut(s) 554, 870, 955
Sau3AI GATC 5 cut(s) 103, 396, 562, 1176, 1296
Sau96I GGNCC 2 cut(s) 335, 899
SchI GAGTC 2 cut(s) 1244, 1353
ScrFI CCNGG 2 cut(s) 218, 1080
SduI GDGCHC 1 cut(s) 1359
SfaNI GCATC 5 cut(s) 415, 481, 856, 868, 1347
SinI GGWCC 2 cut(s) 335, 899
SmiMI CAYNNNNRTG 3 cut(s) 236, 278, 1352
SmlI CTYRAG 1 cut(s) 755
SmoI CTYRAG 1 cut(s) 755
Sse9I AATT 6 cut(s) 207, 351, 571, 744, 1046, 1200
SsiI CCGC 2 cut(s) 33, 954
SspMI CTAG 1 cut(s) 1320
StyD4I CCNGG 2 cut(s) 216, 1078
StyI CCWWGG 5 cut(s) 496, 634, 853, 1090, 1309
TaaI ACNGT 3 cut(s) 113, 995, 1058
TaiI ACGT 3 cut(s) 141, 290, 752
TaqI TCGA 1 cut(s) 432
TasI AATT 6 cut(s) 207, 351, 571, 744, 1046, 1200
TatI WGTACW 1 cut(s) 1053
TauI GCSGC 1 cut(s) 957
TfiI GAWTC 3 cut(s) 925, 1256, 1305
Tru1I TTAA 4 cut(s) 546, 756, 764, 1218
Tru9I TTAA 4 cut(s) 546, 756, 764, 1218
TscAI CASTG 1 cut(s) 243
TseFI GTSAC 2 cut(s) 750, 1345
TseI GCWGC 2 cut(s) 553, 869
Tsp45I GTSAC 2 cut(s) 750, 1345
TspDTI ATGAA 3 cut(s) 398, 699, 1166
TspRI CASTG 1 cut(s) 243
Van91I CCANNNNNTGG 2 cut(s) 259, 332
Vha464I CTTAAG 1 cut(s) 755
VpaK11BI GGWCC 2 cut(s) 335, 899
XapI RAATTY 1 cut(s) 1046
XceI RCATGY 1 cut(s) 630
XcmI CCANNNNNNNNNTGG 1 cut(s) 1298
XmiI GTMKAC 2 cut(s) 432, 987
XmnI GAANNNNTTC 1 cut(s) 1255
XspI CTAG 1 cut(s) 1320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.