AT1G61230

jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000646
Physical Location & Seq
Forward (+)
22578951 .. 22580781
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61230.1

Sequence Viewer

Length: 1518 bp
ATGCAGATTGAGATTGACCATCTTAACAATGAGCATCTTGAATCTGTTGAGAGTTATTACGACGATGCACCCTGTTACATTCAAGCACTTCAATTTAAAACCAATTTCAAGGTTTCCGAACTGATTGGATATGGCAAGGGTACCAAATTTTCACTTTCAGTCAAGGGAAAGATTATCATTGGGTTTCATGGATATATAAAAAGCCAGAACAATCCACTAGTAAAATCTCTTGGAGCATATTTCACATGGATTCCTGATTGTAGATTAGAAGCAAAAGGCAGCAAGGGAGGCATACAATGGGATGATGGAGCAGACCATGAAGGTATAACAAAGATTCATGTAAGAGGTGGTTTTGAAGGCATTCAATACATCAAGTTCGACTATGTCAAGAGTGGACAGCCTAAAATTGGCTCAGTCCACGGTCTCTCGGAGGGTTACTATGATGACGAGTCTACAGCCATTCAAGCACTTCAATTCAAAACTAACATAAAGACTTCTGAGCTGCTAGGATATGAAAAGGGTAAGAAGTTTTCACTTGCAGACAAGGGAAAGAAAATTATTGGGTTTCATGGATATGCTGAGAAGAACCTCATTTCTCTTGGAGCATATTTCACAACAGTTTCTGTTACTAAATCGGTATGTCACGGTAGTAAGATAATCGAGTCTTGGGATGATGGTGTTTTTGACGGCATAAGAAAGGTGTATGTTAGTTATTCTATCAATCATGTAGCGTGTATCACGTTTGAGTACATCAGTAATCACTCAGTTGTGAAGCGTCAGCACGGGAATAACACATCATTAGTAGAAGAGTTTGAGTTAAACTATCCCAATGAATTTATCACATCTGTGGATGGTACTTTCAAAAACTCTGGCATGAGGAAAGTGATGTGCGTTACGTCTTTGGTTTTCAAAACATCAAAAGGGAGAATTTCTCCGACATATGGAAGCGTGACTGGGACTAAATTTGTGTTGGAGACCAAAGATTGTGCTCTAGCTGGGTTCCATGGATGGACTTTTCTTGGTTTTCTTACTGCTATTGGTGCATATTTTTCTCTGCTGCCTTGTCCTCCTAATGCGGAGAAACTAGAAGCACGAGGTTATGATCGAGGAGCTTTTTGGGATGATGGTGTTTACGATGGTGTTAGAAAGATATATGTAGGACAATGTGAAAATGGTATCGCATTCCTCAAGTTCGTTTACGACAAGGACACTCGGATGGTTATTGGAGACGATCATGGAAACAAAACACCACTTGAAGTCAAAGAGTTGGACCTTGAGTATCCTGGTGAATATGTCACAGCGGTGGAGGGCTGTTACAATAAAGGAATTGAGGGTGACGTGGAATCTATAACCATGCTTAAGTTTAAGACTAACAAACGAACATCTATATCCTTTGGATTCGAATCTAGTTCAAGCTTTCTACTCGAGAAAGAAGGCTTCAAAATCGTTGGGTTCCATGGAAAAGCAAGTAACATGATTCATCAGCTTGGGGTTCATGTCATTCCCATCACCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

505

Amino Acids

56.23

Weight (kDa)

6.79

Isoelectric Point (pI)

13.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 3 - 80 3.6e-12 Jacalin-like lectin domain
Jacalin PF01419 90 - 144 6.6e-08 Jacalin-like lectin domain
Jacalin PF01419 144 - 203 1.7e-13 Jacalin-like lectin domain
Jacalin PF01419 221 - 349 5.7e-27 Jacalin-like lectin domain
Jacalin PF01419 363 - 499 2.4e-36 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 452
AciI CCGC 2 cut(s) 1076, 1301
AcsI RAATTY 4 cut(s) 146, 833, 927, 962
AfaI GTAC 3 cut(s) 142, 749, 856
AfiI CCNNNNNNNGG 2 cut(s) 407, 941
AflII CTTAAG 1 cut(s) 1358
AhlI ACTAGT 1 cut(s) 217
AjiI CACGTC 1 cut(s) 1339
AjnI CCWGG 1 cut(s) 1282
AleI CACNNNNGTG 2 cut(s) 845, 1301
AluBI AGCT 5 cut(s) 502, 995, 1112, 1416, 1486
AluI AGCT 5 cut(s) 502, 995, 1112, 1416, 1486
Alw21I GWGCWC 1 cut(s) 991
Alw26I GTCTC 3 cut(s) 428, 968, 1221
AlwNI CAGNNNCTG 1 cut(s) 623
Ama87I CYCGRG 1 cut(s) 1424
ApeKI GCWGC 3 cut(s) 279, 502, 1057
ApoI RAATTY 4 cut(s) 146, 833, 927, 962
Asp700I GAANNNNTTC 1 cut(s) 360
Asp718I GGTACC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 1270
AsuHPI GGTGA 3 cut(s) 1298, 1346, 1501
AsuII TTCGAA 1 cut(s) 1401
AvaI CYCGRG 1 cut(s) 1424
AvaII GGWCC 1 cut(s) 1270
BanI GGYRCC 1 cut(s) 140
BauI CACGAG 1 cut(s) 1092
Bbv12I GWGCWC 1 cut(s) 991
BbvI GCAGC 3 cut(s) 291, 489, 1044
BccI CCATC 9 cut(s) 27, 299, 668, 845, 1002, 1118, 1130, 1210, 1514
BceAI ACGGC 1 cut(s) 703
BciT130I CCWGG 1 cut(s) 1284
BciVI GTATCC 1 cut(s) 1290
BcoDI GTCTC 3 cut(s) 428, 968, 1221
BcuI ACTAGT 1 cut(s) 217
BfaI CTAG 5 cut(s) 218, 506, 992, 1085, 1407
BfmI CTRYAG 1 cut(s) 453
BfrI CTTAAG 1 cut(s) 1358
BfuI GTATCC 1 cut(s) 1290
BisI GCNGC 3 cut(s) 280, 503, 1058
BlsI GCNGC 3 cut(s) 281, 504, 1059
Bme1390I CCNGG 1 cut(s) 1284
Bme18I GGWCC 1 cut(s) 1270
BmeT110I CYCGRG 1 cut(s) 1424
BmgBI CACGTC 1 cut(s) 1339
BmgT120I GGNCC 1 cut(s) 1270
BmiI GGNNCC 3 cut(s) 142, 1001, 1454
BmrFI CCNGG 1 cut(s) 1284
BmrI ACTGGG 1 cut(s) 963
BmsI GCATC 2 cut(s) 43, 55
BmuI ACTGGG 1 cut(s) 963
BplI GAGNNNNNCTC 2 cut(s) 916, 948
Bpu14I TTCGAA 1 cut(s) 1401
BpuEI CTTGAG 2 cut(s) 1172, 1295
BsaBI GATNNNNATC 1 cut(s) 1402
BsaI GGTCTC 2 cut(s) 428, 968
BsaJI CCNNGG 3 cut(s) 418, 1003, 1456
Bsc4I CCNNNNNNNGG 2 cut(s) 407, 941
Bse1I ACTGG 1 cut(s) 958
Bse8I GATNNNNATC 1 cut(s) 1402
BseBI CCWGG 1 cut(s) 1284
BseDI CCNNGG 3 cut(s) 418, 1003, 1456
BseGI GGATG 6 cut(s) 307, 676, 856, 1013, 1126, 1221
BseJI GATNNNNATC 1 cut(s) 1402
BseLI CCNNNNNNNGG 2 cut(s) 407, 941
BseMII CTCAG 4 cut(s) 426, 489, 570, 777
BseNI ACTGG 1 cut(s) 958
BseRI GAGGAG 1 cut(s) 1122
BseXI GCAGC 3 cut(s) 291, 489, 1044
BseYI CCCAGC 1 cut(s) 995
BshNI GGYRCC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 991
BsiHKCI CYCGRG 1 cut(s) 1424
BslFI GGGAC 1 cut(s) 970
BslI CCNNNNNNNGG 2 cut(s) 407, 941
BsmAI GTCTC 3 cut(s) 428, 968, 1221
BsmBI CGTCTC 1 cut(s) 1221
BsmFI GGGAC 1 cut(s) 970
BsmI GAATGC 2 cut(s) 360, 1181
Bso31I GGTCTC 2 cut(s) 428, 968
BsoBI CYCGRG 1 cut(s) 1424
Bsp119I TTCGAA 1 cut(s) 1401
Bsp1286I GDGCHC 1 cut(s) 991
Bsp143I GATC 2 cut(s) 1102, 1231
Bsp19I CCATGG 2 cut(s) 1003, 1456
BspACI CCGC 2 cut(s) 1076, 1301
BspCNI CTCAG 4 cut(s) 425, 490, 571, 776
BspLI GGNNCC 3 cut(s) 142, 1001, 1454
BspT104I TTCGAA 1 cut(s) 1401
BspT107I GGYRCC 1 cut(s) 140
BspTI CTTAAG 1 cut(s) 1358
BspTNI GGTCTC 2 cut(s) 428, 968
BsrI ACTGG 1 cut(s) 958
BssECI CCNNGG 3 cut(s) 418, 1003, 1456
BssMI GATC 2 cut(s) 1102, 1231
BssSI CACGAG 1 cut(s) 1092
BssT1I CCWWGG 2 cut(s) 1003, 1456
Bst2BI CACGAG 1 cut(s) 1092
Bst2UI CCWGG 1 cut(s) 1284
Bst4CI ACNGT 3 cut(s) 422, 619, 647
Bst6I CTCTTC 1 cut(s) 801
BstAFI CTTAAG 1 cut(s) 1358
BstBI TTCGAA 1 cut(s) 1401
BstDEI CTNAG 4 cut(s) 412, 498, 579, 763
BstDSI CCRYGG 3 cut(s) 418, 1003, 1456
BstF5I GGATG 6 cut(s) 307, 676, 856, 1013, 1126, 1221
BstKTI GATC 2 cut(s) 1105, 1234
BstMAI GTCTC 3 cut(s) 428, 968, 1221
BstMBI GATC 2 cut(s) 1102, 1231
BstMWI GCNNNNNNNGC 3 cut(s) 288, 464, 1040
BstNI CCWGG 1 cut(s) 1284
BstSCI CCNGG 1 cut(s) 1282
BstSFI CTRYAG 1 cut(s) 453
BstV1I GCAGC 3 cut(s) 291, 489, 1044
BsuI GTATCC 1 cut(s) 1290
BtgI CCRYGG 3 cut(s) 418, 1003, 1456
BtrI CACGTC 1 cut(s) 1339
BtsCI GGATG 6 cut(s) 307, 676, 856, 1013, 1126, 1221
BtsIMutI CAGTG 1 cut(s) 1513
CaiI CAGNNNCTG 1 cut(s) 623
Cfr13I GGNCC 1 cut(s) 1270
CseI GACGC 1 cut(s) 764
Csp6I GTAC 3 cut(s) 141, 748, 855
CviQI GTAC 3 cut(s) 141, 748, 855
DdeI CTNAG 4 cut(s) 412, 498, 579, 763
DpnI GATC 2 cut(s) 1104, 1233
DpnII GATC 2 cut(s) 1102, 1231
DraI TTTAAA 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 801
Eco130I CCWWGG 2 cut(s) 1003, 1456
Eco31I GGTCTC 2 cut(s) 428, 968
Eco47I GGWCC 1 cut(s) 1270
Eco88I CYCGRG 1 cut(s) 1424
EcoRII CCWGG 1 cut(s) 1282
EcoT14I CCWWGG 2 cut(s) 1003, 1456
ErhI CCWWGG 2 cut(s) 1003, 1456
Esp3I CGTCTC 1 cut(s) 1221
FaqI GGGAC 1 cut(s) 970
FauNDI CATATG 1 cut(s) 940
FblI GTMKAC 1 cut(s) 452
Fnu4HI GCNGC 3 cut(s) 280, 503, 1058
FokI GGATG 6 cut(s) 314, 683, 863, 1020, 1133, 1228
Fsp4HI GCNGC 3 cut(s) 280, 503, 1058
FspBI CTAG 5 cut(s) 218, 506, 992, 1085, 1407
GluI GCNGC 3 cut(s) 280, 503, 1058
GsaI CCCAGC 1 cut(s) 999
HgaI GACGC 1 cut(s) 764
HindIII AAGCTT 1 cut(s) 1414
HinfI GANTC 9 cut(s) 41, 250, 334, 449, 662, 1343, 1398, 1403, 1477
HphI GGTGA 3 cut(s) 1298, 1346, 1501
Hpy166II GTNNAC 5 cut(s) 395, 418, 453, 1132, 1198
Hpy188I TCNGA 5 cut(s) 118, 430, 499, 936, 1215
Hpy188III TCNNGA 4 cut(s) 38, 254, 388, 1426
Hpy8I GTNNAC 5 cut(s) 395, 418, 453, 1132, 1198
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 314, 350, 1427
HpyCH4III ACNGT 3 cut(s) 422, 619, 647
HpyCH4IV ACGT 3 cut(s) 740, 896, 1338
HpyCH4V TGCA 4 cut(s) 4, 68, 539, 1043
HpyF10VI GCNNNNNNNGC 3 cut(s) 288, 464, 1040
HpyF3I CTNAG 4 cut(s) 412, 498, 579, 763
HpySE526I ACGT 3 cut(s) 740, 896, 1338
KpnI GGTACC 1 cut(s) 144
Kzo9I GATC 2 cut(s) 1102, 1231
LmnI GCTCC 4 cut(s) 233, 308, 602, 1109
LpnPI CCDG 8 cut(s) 85, 218, 267, 855, 939, 981, 1269, 1296
Lsp1109I GCAGC 3 cut(s) 291, 489, 1044
LweI GCATC 2 cut(s) 43, 55
MaeI CTAG 5 cut(s) 218, 506, 992, 1085, 1407
MaeII ACGT 3 cut(s) 740, 896, 1338
MalI GATC 2 cut(s) 1104, 1233
MboI GATC 2 cut(s) 1102, 1231
MboII GAAGA 2 cut(s) 595, 818
MhlI GDGCHC 1 cut(s) 991
MlyI GAGTC 2 cut(s) 458, 671
MmeI TCCRAC 3 cut(s) 951, 959, 1248
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 5 cut(s) 24, 96, 818, 1359, 1365
MslI CAYNNNNRTG 4 cut(s) 573, 845, 1214, 1301
MspA1I CMGCKG 1 cut(s) 1301
MspCI CTTAAG 1 cut(s) 1358
MspR9I CCNGG 1 cut(s) 1284
Mva1269I GAATGC 2 cut(s) 360, 1181
MvaI CCWGG 1 cut(s) 1284
MwoI GCNNNNNNNGC 3 cut(s) 288, 464, 1040
NcoI CCATGG 2 cut(s) 1003, 1456
NdeI CATATG 1 cut(s) 940
NdeII GATC 2 cut(s) 1102, 1231
NlaIV GGNNCC 3 cut(s) 142, 1001, 1454
NmuCI GTSAC 4 cut(s) 641, 949, 1294, 1334
NspV TTCGAA 1 cut(s) 1401
OliI CACNNNNGTG 2 cut(s) 845, 1301
PaeR7I CTCGAG 1 cut(s) 1424
PctI GAATGC 2 cut(s) 360, 1181
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 7 cut(s) 41, 250, 334, 1343, 1398, 1403, 1477
PflFI GACNNNGTC 1 cut(s) 383
PkrI GCNGC 3 cut(s) 281, 504, 1059
PleI GAGTC 2 cut(s) 457, 670
PpsI GAGTC 2 cut(s) 457, 670
Psp6I CCWGG 1 cut(s) 1282
PspFI CCCAGC 1 cut(s) 995
PspGI CCWGG 1 cut(s) 1282
PspN4I GGNNCC 3 cut(s) 142, 1001, 1454
PspPI GGNCC 1 cut(s) 1270
PstNI CAGNNNCTG 1 cut(s) 623
PsyI GACNNNGTC 1 cut(s) 383
RsaI GTAC 3 cut(s) 142, 749, 856
RsaNI GTAC 3 cut(s) 141, 748, 855
RseI CAYNNNNRTG 4 cut(s) 573, 845, 1214, 1301
SaqAI TTAA 5 cut(s) 24, 96, 818, 1359, 1365
SatI GCNGC 3 cut(s) 280, 503, 1058
Sau3AI GATC 2 cut(s) 1102, 1231
Sau96I GGNCC 1 cut(s) 1270
SchI GAGTC 2 cut(s) 458, 671
ScrFI CCNGG 1 cut(s) 1284
SduI GDGCHC 1 cut(s) 991
SfaNI GCATC 2 cut(s) 43, 55
SfcI CTRYAG 1 cut(s) 453
Sfr274I CTCGAG 1 cut(s) 1424
SfuI TTCGAA 1 cut(s) 1401
SinI GGWCC 1 cut(s) 1270
SlaI CTCGAG 1 cut(s) 1424
SmiMI CAYNNNNRTG 4 cut(s) 573, 845, 1214, 1301
SmlI CTYRAG 4 cut(s) 1187, 1274, 1358, 1424
SmoI CTYRAG 4 cut(s) 1187, 1274, 1358, 1424
SpeI ACTAGT 1 cut(s) 217
SsiI CCGC 2 cut(s) 1076, 1301
SspMI CTAG 5 cut(s) 218, 506, 992, 1085, 1407
StyD4I CCNGG 1 cut(s) 1282
StyI CCWWGG 2 cut(s) 1003, 1456
TaaI ACNGT 3 cut(s) 422, 619, 647
TaiI ACGT 3 cut(s) 743, 899, 1341
TaqI TCGA 5 cut(s) 378, 660, 1105, 1401, 1425
TatI WGTACW 1 cut(s) 747
TfiI GAWTC 7 cut(s) 41, 250, 334, 1343, 1398, 1403, 1477
Tru1I TTAA 5 cut(s) 24, 96, 818, 1359, 1365
Tru9I TTAA 5 cut(s) 24, 96, 818, 1359, 1365
TseFI GTSAC 4 cut(s) 641, 949, 1294, 1334
TseI GCWGC 3 cut(s) 279, 502, 1057
Tsp45I GTSAC 4 cut(s) 641, 949, 1294, 1334
TspDTI ATGAA 8 cut(s) 176, 326, 333, 528, 557, 846, 1469, 1484
Tth111I GACNNNGTC 1 cut(s) 383
Vha464I CTTAAG 1 cut(s) 1358
VpaK11BI GGWCC 1 cut(s) 1270
XapI RAATTY 4 cut(s) 146, 833, 927, 962
XhoI CTCGAG 1 cut(s) 1424
XmiI GTMKAC 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 5 cut(s) 218, 506, 992, 1085, 1407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.