AT1G57570

jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000646
Physical Location & Seq
Forward (+)
21320915 .. 21324637
3723 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G57570.1

Sequence Viewer

Length: 1845 bp
ATGGAAAGAAATCTCCTTTCAATACTAATGCGACGACGTTTGGCGGAGAGAAATAGAGATGCCATTGAGTTGGCCGCGGTACAAAAAATGGAAGTGATAGGCAGTACAGAAGGCTATACATTTGATGATGGATCCGACCATGACGATGTTACCAAGATTTTTGTAGGAGGTGGTCGTCAAGGCATTCATTACATAGAGTTTGAATATGTAAAAAATGGGCAGCTGGAATCAGGAGTACACTTGGGTGTTCGGTATAGAGGTTTCACAGAGACGTTTGAGATTAACCATCTCAACAATGAACATCTTGAATCTGTGGAGGGTTACTATGACTACGGGTCGGGTTACATTCAAGGACTTCAATTCAAAACCAATTTTAGGGTTTCCGAACTGATAGGATATGACGAGGGTACTAAGTTTTCACTTTCAGTTAAGGGAAAGAGAATCATTGGGTTTCATGGTTATATGAAGGAAAGAAAAATCATCTCTCTTGGAGGATATTTCTCTTGGATTCATCCTCGTAAAATGGAAGCAAAAGGCAGCAAGGGAGGAAACCAGTGGGATGATGGAACCAATAATGATGGTGTGACAAAGATTCATGTACGAGGTGGTGTTGAAGGAATTCAATACATCAAGTTTGATTATGTCAGAAAAAGTGGACAACACATTAATGGATCAATCCATGGTCTCTCGGGTAGCGGGTTCACACAAACGTTTGAGATTGACCATCTCAACAATGAACATCTGGTATGTGTAGAAGGATACTACGACGATGAATCTGGTGTTATTCAAGCCCTTCAATTCAAAACTAACATCAAGACTTCAGAGCTTCTTGGGTATAAAAAGGGTAAGAAATTTTCACTTGTAGACAAGAGGAAAAAAATCGTTGGCTTTCATGGATATGCTGACAAGAATCTCAACTCTCTGGGAGCATATTTCACAACGGTTTCTCCTACTAAATCGGAATGCTATGGTAGTTCTAAAGGCATATATTGGGATGATGGTGTGTTTGATTTCATAAGAACGGTGTACGTTAGTAGTAATGTCATGAACGTAAGGTATATTAAGTTTCATTACTATAACCGCGCAGTTGTAGTGCGTCAACACGGGTGGAATAGTATAGTAGAAGAAGACGGAGAAAAAGAGTTCGAGCTTGACTATCCAAATGAATTGATCACATCTGTGGAGGGGACTATGAAAAGCTTTAGTCGTAGCGAAATAAGAATTTCGTCATTGACATTTAAAACATCAAAAGGGAGAACCTCTCCAACAATTGGAATCGCGTCTGGTACCAAATTTCTGTTAGCAAGCAAAGGATGTGCTGTGGTTGGGTTCTATGGAAGACATGATGATCGTGATCTTGTTGCTATTGGAGCATATTTTTCTCCATTGCCTCCTCCTACTGCGGAGAAACTACAAGCACAAGGTGGTAATCAAGGAGATTCATGGGACGATGGTGTTTTCGAAGGTGTTAGAAAGTTGTACGTAGGACAAGGTAAAAATTGTGTCGCATTCCTTAAGGTTGTGTACGATAGCAACACTCAGGTTGTTATTGGAGAAGATCATGGAAACAAAACACTATTTGAAGTCAAGGAGTACGAGCTTGAATATCCAAGTGAATACATTACAGCCGTGGATGGTTGTTACAATAAAGTAAATGGAACTGAAGTCGAAGTTATAACCATGCTCAGGATTCAAACGAACAAACGAACATCTATACCCGTTGGATGTGAATCTAACTCTAGCTTTGTACTTAAAAAAGAAGGTTACAAAATTGTTGGATTCCATGGGAAAGCAAGTAACATGATTAATCAGCTTGGAGTCCATGTCGTGCCCTTGACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

614

Amino Acids

68.88

Weight (kDa)

6.85

Isoelectric Point (pI)

27.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 31 - 166 6.3e-27 Jacalin-like lectin domain
Jacalin PF01419 175 - 311 6.4e-36 Jacalin-like lectin domain
Jacalin PF01419 321 - 459 1.3e-30 Jacalin-like lectin domain
Jacalin PF01419 472 - 608 9.2e-38 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1676
Acc65I GGTACC 1 cut(s) 1286
AccB1I GGYRCC 1 cut(s) 1286
AccB7I CCANNNNNTGG 1 cut(s) 1271
AccI GTMKAC 1 cut(s) 864
AccII CGCG 3 cut(s) 77, 1083, 1280
AciI CCGC 6 cut(s) 44, 75, 77, 696, 1081, 1403
AclI AACGTT 1 cut(s) 710
AclWI GGATC 3 cut(s) 126, 139, 679
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 4 cut(s) 618, 851, 1221, 1292
AcuI CTGAAG 2 cut(s) 804, 1683
AdeI CACNNNGTG 1 cut(s) 1424
AfiI CCNNNNNNNGG 3 cut(s) 375, 1271, 1686
AflII CTTAAG 1 cut(s) 1514
AhdI GACNNNNNGTC 1 cut(s) 334
AleI CACNNNNGTG 2 cut(s) 243, 1178
AluBI AGCT 7 cut(s) 223, 826, 1150, 1200, 1600, 1743, 1813
AluI AGCT 7 cut(s) 223, 826, 1150, 1200, 1600, 1743, 1813
Alw26I GTCTC 2 cut(s) 263, 689
AlwI GGATC 3 cut(s) 126, 139, 679
Ama87I CYCGRG 1 cut(s) 688
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 220, 537
ApoI RAATTY 4 cut(s) 618, 851, 1221, 1292
AseI ATTAAT 2 cut(s) 666, 1806
Asp700I GAANNNNTTC 1 cut(s) 618
Asp718I GGTACC 1 cut(s) 1286
AspLEI GCGC 1 cut(s) 1085
AsuII TTCGAA 1 cut(s) 1461
AvaI CYCGRG 1 cut(s) 688
BaeGI GKGCMC 1 cut(s) 1833
BamHI GGATCC 1 cut(s) 131
BanI GGYRCC 1 cut(s) 1286
BbsI GAAGAC 2 cut(s) 1134, 1345
BbvI GCAGC 2 cut(s) 232, 549
BccI CCATC 8 cut(s) 122, 294, 557, 572, 732, 992, 1445, 1628
BceAI ACGGC 1 cut(s) 1613
BciVI GTATCC 1 cut(s) 752
BclI TGATCA 1 cut(s) 1170
BcoDI GTCTC 2 cut(s) 263, 689
BfaI CTAG 1 cut(s) 1740
BfrI CTTAAG 1 cut(s) 1514
BfuI GTATCC 1 cut(s) 752
BisI GCNGC 3 cut(s) 75, 221, 538
BlsI GCNGC 3 cut(s) 76, 222, 539
BmeRI GACNNNNNGTC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 688
BmiI GGNNCC 3 cut(s) 133, 568, 1288
BmsI GCATC 1 cut(s) 49
BpiI GAAGAC 2 cut(s) 1134, 1345
BplI GAGNNNNNCTC 2 cut(s) 1246, 1278
Bpu10I CCTNAGC 1 cut(s) 1685
Bpu14I TTCGAA 1 cut(s) 1461
BsaAI YACGTR 1 cut(s) 1483
BsaBI GATNNNNATC 2 cut(s) 1353, 1729
BsaI GGTCTC 1 cut(s) 689
BsaJI CCNNGG 4 cut(s) 75, 679, 1629, 1783
BsaXI ACNNNNNCTCC 4 cut(s) 931, 961, 1809, 1839
Bsc4I CCNNNNNNNGG 3 cut(s) 375, 1271, 1686
Bse1I ACTGG 1 cut(s) 553
Bse3DI GCAATG 1 cut(s) 1385
Bse8I GATNNNNATC 2 cut(s) 1353, 1729
BseDI CCNNGG 4 cut(s) 75, 679, 1629, 1783
BseGI GGATG 6 cut(s) 511, 565, 1000, 1319, 1639, 1730
BseJI GATNNNNATC 2 cut(s) 1353, 1729
BseLI CCNNNNNNNGG 3 cut(s) 375, 1271, 1686
BseMI GCAATG 1 cut(s) 1385
BseMII CTCAG 3 cut(s) 1553, 1699, 1830
BseNI ACTGG 1 cut(s) 553
BseRI GAGGAG 1 cut(s) 1383
BseSI GKGCMC 1 cut(s) 1833
BseXI GCAGC 2 cut(s) 232, 549
Bsh1236I CGCG 3 cut(s) 77, 1083, 1280
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 1286
BsiHKCI CYCGRG 1 cut(s) 688
BslFI GGGAC 2 cut(s) 1201, 1460
BslI CCNNNNNNNGG 3 cut(s) 375, 1271, 1686
BsmAI GTCTC 2 cut(s) 263, 689
BsmBI CGTCTC 1 cut(s) 263
BsmFI GGGAC 2 cut(s) 1201, 1460
BsmI GAATGC 3 cut(s) 183, 968, 1508
BsnI GGCC 1 cut(s) 74
Bso31I GGTCTC 1 cut(s) 689
BsoBI CYCGRG 1 cut(s) 688
Bsp119I TTCGAA 1 cut(s) 1461
Bsp1286I GDGCHC 1 cut(s) 1833
Bsp143I GATC 6 cut(s) 131, 671, 1170, 1348, 1354, 1558
Bsp19I CCATGG 2 cut(s) 679, 1783
BspACI CCGC 6 cut(s) 44, 75, 77, 696, 1081, 1403
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 3 cut(s) 1552, 1698, 1831
BspFNI CGCG 3 cut(s) 77, 1083, 1280
BspHI TCATGA 1 cut(s) 1044
BspLI GGNNCC 3 cut(s) 133, 568, 1288
BspPI GGATC 3 cut(s) 126, 139, 679
BspT104I TTCGAA 1 cut(s) 1461
BspT107I GGYRCC 1 cut(s) 1286
BspTI CTTAAG 1 cut(s) 1514
BspTNI GGTCTC 1 cut(s) 689
BsrDI GCAATG 1 cut(s) 1385
BsrI ACTGG 1 cut(s) 553
BssECI CCNNGG 4 cut(s) 75, 679, 1629, 1783
BssMI GATC 6 cut(s) 131, 671, 1170, 1348, 1354, 1558
BssT1I CCWWGG 2 cut(s) 679, 1783
Bst4CI ACNGT 2 cut(s) 943, 1024
BstAFI CTTAAG 1 cut(s) 1514
BstBAI YACGTR 1 cut(s) 1483
BstBI TTCGAA 1 cut(s) 1461
BstC8I GCNNGC 1 cut(s) 1306
BstDEI CTNAG 4 cut(s) 411, 1539, 1685, 1839
BstDSI CCRYGG 4 cut(s) 75, 679, 1629, 1783
BstF5I GGATG 6 cut(s) 511, 565, 1000, 1319, 1639, 1730
BstFNI CGCG 3 cut(s) 77, 1083, 1280
BstHHI GCGC 1 cut(s) 1085
BstKTI GATC 6 cut(s) 134, 674, 1173, 1351, 1357, 1561
BstMAI GTCTC 2 cut(s) 263, 689
BstMBI GATC 6 cut(s) 131, 671, 1170, 1348, 1354, 1558
BstMWI GCNNNNNNNGC 1 cut(s) 1370
BstSLI GKGCMC 1 cut(s) 1833
BstSNI TACGTA 1 cut(s) 1483
BstUI CGCG 3 cut(s) 77, 1083, 1280
BstV1I GCAGC 2 cut(s) 232, 549
BstV2I GAAGAC 2 cut(s) 1134, 1345
BstX2I RGATCY 1 cut(s) 131
BstXI CCANNNNNNTGG 1 cut(s) 70
BstYI RGATCY 1 cut(s) 131
BsuI GTATCC 1 cut(s) 752
BsuRI GGCC 1 cut(s) 74
BtgI CCRYGG 4 cut(s) 75, 679, 1629, 1783
BtsCI GGATG 6 cut(s) 511, 565, 1000, 1319, 1639, 1730
BtsIMutI CAGTG 1 cut(s) 560
Cac8I GCNNGC 1 cut(s) 1306
CciI TCATGA 1 cut(s) 1044
CfoI GCGC 1 cut(s) 1085
Cfr42I CCGCGG 1 cut(s) 78
CseI GACGC 2 cut(s) 1085, 1269
CspCI CAANNNNNGTGG 2 cut(s) 1088, 1123
DdeI CTNAG 4 cut(s) 411, 1539, 1685, 1839
DpnI GATC 6 cut(s) 133, 673, 1172, 1350, 1356, 1560
DpnII GATC 6 cut(s) 131, 671, 1170, 1348, 1354, 1558
DraI TTTAAA 1 cut(s) 1240
DraIII CACNNNGTG 1 cut(s) 1424
DriI GACNNNNNGTC 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 72
Eam1105I GACNNNNNGTC 1 cut(s) 334
EciI GGCGGA 1 cut(s) 59
Eco105I TACGTA 1 cut(s) 1483
Eco130I CCWWGG 2 cut(s) 679, 1783
Eco31I GGTCTC 1 cut(s) 689
Eco57I CTGAAG 2 cut(s) 804, 1683
Eco88I CYCGRG 1 cut(s) 688
EcoRI GAATTC 1 cut(s) 618
EcoT14I CCWWGG 2 cut(s) 679, 1783
ErhI CCWWGG 2 cut(s) 679, 1783
Esp3I CGTCTC 1 cut(s) 263
FaqI GGGAC 2 cut(s) 1201, 1460
FauI CCCGC 1 cut(s) 689
FbaI TGATCA 1 cut(s) 1170
FblI GTMKAC 1 cut(s) 864
Fnu4HI GCNGC 3 cut(s) 75, 221, 538
FokI GGATG 6 cut(s) 498, 572, 1007, 1326, 1646, 1737
Fsp4HI GCNGC 3 cut(s) 75, 221, 538
FspBI CTAG 1 cut(s) 1740
GlaI GCGC 1 cut(s) 1084
GluI GCNGC 3 cut(s) 75, 221, 538
HaeIII GGCC 1 cut(s) 74
HgaI GACGC 2 cut(s) 1085, 1269
HhaI GCGC 1 cut(s) 1085
Hin6I GCGC 1 cut(s) 1083
HinP1I GCGC 1 cut(s) 1083
HincII GTYRAC 1 cut(s) 1100
HindII GTYRAC 1 cut(s) 1100
HindIII AAGCTT 1 cut(s) 1198
Hpy166II GTNNAC 7 cut(s) 238, 656, 702, 865, 1027, 1100, 1525
Hpy188I TCNGA 5 cut(s) 136, 385, 647, 823, 961
Hpy188III TCNNGA 6 cut(s) 231, 305, 814, 1045, 1352, 1687
Hpy8I GTNNAC 7 cut(s) 238, 656, 702, 865, 1027, 1100, 1525
Hpy99I CGWCG 3 cut(s) 36, 39, 770
HpyAV CCTTC 7 cut(s) 104, 460, 608, 749, 803, 1457, 1754
HpyCH4III ACNGT 2 cut(s) 943, 1024
HpyCH4IV ACGT 6 cut(s) 37, 272, 710, 1029, 1050, 1482
HpyF10VI GCNNNNNNNGC 1 cut(s) 1370
HpyF3I CTNAG 4 cut(s) 411, 1539, 1685, 1839
HpySE526I ACGT 6 cut(s) 37, 272, 710, 1029, 1050, 1482
HspAI GCGC 1 cut(s) 1083
KpnI GGTACC 1 cut(s) 1290
Ksp22I TGATCA 1 cut(s) 1170
KspI CCGCGG 1 cut(s) 78
Kzo9I GATC 6 cut(s) 131, 671, 1170, 1348, 1354, 1558
LmnI GCTCC 2 cut(s) 926, 1370
LpnPI CCDG 9 cut(s) 209, 216, 566, 728, 762, 908, 1269, 1526, 1672
Lsp1109I GCAGC 2 cut(s) 232, 549
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 1740
MaeII ACGT 6 cut(s) 37, 272, 710, 1029, 1050, 1482
MaeIII GTNAC 7 cut(s) 148, 320, 341, 583, 1640, 1763, 1796
MalI GATC 6 cut(s) 133, 673, 1172, 1350, 1356, 1560
MboI GATC 6 cut(s) 131, 671, 1170, 1348, 1354, 1558
MboII GAAGA 4 cut(s) 1136, 1139, 1350, 1568
MfeI CAATTG 1 cut(s) 1269
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 1833
MlyI GAGTC 1 cut(s) 1827
MmeI TCCRAC 4 cut(s) 159, 1289, 1702, 1756
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 8 cut(s) 282, 429, 666, 1062, 1239, 1515, 1752, 1806
MslI CAYNNNNRTG 5 cut(s) 144, 243, 666, 897, 1178
MspA1I CMGCKG 2 cut(s) 77, 223
MspCI CTTAAG 1 cut(s) 1514
MunI CAATTG 1 cut(s) 1269
Mva1269I GAATGC 3 cut(s) 183, 968, 1508
MvnI CGCG 3 cut(s) 77, 1083, 1280
MwoI GCNNNNNNNGC 1 cut(s) 1370
NcoI CCATGG 2 cut(s) 679, 1783
NdeII GATC 6 cut(s) 131, 671, 1170, 1348, 1354, 1558
NlaIV GGNNCC 3 cut(s) 133, 568, 1288
NmuCI GTSAC 1 cut(s) 583
NspV TTCGAA 1 cut(s) 1461
OliI CACNNNNGTG 2 cut(s) 243, 1178
PagI TCATGA 1 cut(s) 1044
PctI GAATGC 3 cut(s) 183, 968, 1508
PdmI GAANNNNTTC 1 cut(s) 618
PflMI CCANNNNNTGG 1 cut(s) 1271
PkrI GCNGC 3 cut(s) 76, 222, 539
PleI GAGTC 1 cut(s) 1826
PpsI GAGTC 1 cut(s) 1826
Ppu21I YACGTR 1 cut(s) 1483
PshBI ATTAAT 2 cut(s) 666, 1806
PsiI TTATAA 1 cut(s) 1676
Psp1406I AACGTT 1 cut(s) 710
PspN4I GGNNCC 3 cut(s) 133, 568, 1288
PsuI RGATCY 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 223
RseI CAYNNNNRTG 5 cut(s) 144, 243, 666, 897, 1178
SacII CCGCGG 1 cut(s) 78
SaqAI TTAA 8 cut(s) 282, 429, 666, 1062, 1239, 1515, 1752, 1806
SatI GCNGC 3 cut(s) 75, 221, 538
Sau3AI GATC 6 cut(s) 131, 671, 1170, 1348, 1354, 1558
SchI GAGTC 1 cut(s) 1827
SduI GDGCHC 1 cut(s) 1833
SfaNI GCATC 1 cut(s) 49
Sfr303I CCGCGG 1 cut(s) 78
SfuI TTCGAA 1 cut(s) 1461
SgrBI CCGCGG 1 cut(s) 78
SmiMI CAYNNNNRTG 5 cut(s) 144, 243, 666, 897, 1178
SmlI CTYRAG 1 cut(s) 1514
SmoI CTYRAG 1 cut(s) 1514
SnaBI TACGTA 1 cut(s) 1483
SsiI CCGC 6 cut(s) 44, 75, 77, 696, 1081, 1403
SspMI CTAG 1 cut(s) 1740
StyI CCWWGG 2 cut(s) 679, 1783
TaaI ACNGT 2 cut(s) 943, 1024
TaiI ACGT 6 cut(s) 40, 275, 713, 1032, 1053, 1485
TaqI TCGA 3 cut(s) 1146, 1461, 1668
TatI WGTACW 3 cut(s) 104, 235, 1747
TauI GCSGC 1 cut(s) 77
Tru1I TTAA 8 cut(s) 282, 429, 666, 1062, 1239, 1515, 1752, 1806
Tru9I TTAA 8 cut(s) 282, 429, 666, 1062, 1239, 1515, 1752, 1806
TscAI CASTG 1 cut(s) 560
TseFI GTSAC 1 cut(s) 583
TseI GCWGC 2 cut(s) 220, 537
Tsp45I GTSAC 1 cut(s) 583
TspGWI ACGGA 1 cut(s) 1146
TspRI CASTG 1 cut(s) 560
Van91I CCANNNNNTGG 1 cut(s) 1271
Vha464I CTTAAG 1 cut(s) 1514
VspI ATTAAT 2 cut(s) 666, 1806
XapI RAATTY 4 cut(s) 618, 851, 1221, 1292
XcmI CCANNNNNNNNNTGG 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 864
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 1 cut(s) 1740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.