AT1G52050

Kelch motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000646
Physical Location & Seq
Reverse (-)
19354919 .. 19356901
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52050.1

Sequence Viewer

Length: 942 bp
ATGTTCATCATCTATCTTTTTATCTTTCTCTCATCTGCCATTATAGATTCAAATGGGGTTGCAATGGCCCAAAAGATCGAAGCAATTGGTGGGAAGGGAGGGAAACGGTGGGATGACGGTGCGAATGATAATGTAGCAAAGGTTTACATACGAGGTGATCATGAAGGCATTCAGTACATCAAATTCGACTATGTCAAGGATGGACAATCGTTTAATGGATCAGTCCATGGTGTTTCAGCCGACGGTTTCACACAGACGTTTGAGATTGACCATCTCCAGTATGAACAAATTGTATCTGTTGAGGGTTACTACGACTGGAAGACCGGTGTGATGCAAGCACTCCAATTCAAAACCAACCTCAAGACTTCAGAATTTATTGGATATCAAAAGGGTACTAAGTTTTCACTTGGAGTCGATGGAAAAGTCATCGTTGGCTTCCATGGATCTGCTTGGCGTAGCCTCCGATCTCTTGGTGCATATGTAAAGACTGCTCCTACCAAATCAGAACTCCAGGGTGGCATAACCGGAGGCGAATATTGGGATGATGGTCCTAATTTCGACGGTGTAAGAAAGGTGTATGTTACTTTTACTGAAACTCATATAAGGAGTATGAACATTGACTATGACCAAGATGGCCAAGTGGTGACACGTTATCACGGGATGAAGAATGGAGAAACGCAGGAGTTTGCTGTGGACTTTCCGAATGAATATATGACATCTGTGGAGGGTACATACGACCATATCAGTGAGGGTAACTATTTGGTTCTTACGTCATTGACTTTCAAAACGTCAAAAGGGAGAATCTCTCAGACATTTGGATTGGTCATTGGTACCAAATTTGTGTTGGAGACTAAAGGTAATGTTATCAGTGGGTTCCATGGAAGAGATGGTGGTTCTTTTGATGCTATTGGAGTATATTTCTCTCCAATGATATCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin Kelch_1

Protein Analysis

313

Amino Acids

34.65

Weight (kDa)

5.62

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 26 - 160 4.2e-34 Jacalin-like lectin domain
Jacalin PF01419 170 - 306 6.8e-34 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 830
AccB1I GGYRCC 1 cut(s) 830
AclWI GGATC 2 cut(s) 226, 451
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 3 cut(s) 182, 371, 836
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 4 cut(s) 176, 394, 730, 832
AflIII ACRYGT 1 cut(s) 647
AgeI ACCGGT 1 cut(s) 323
AgsI TTSAA 3 cut(s) 51, 349, 784
AjnI CCWGG 1 cut(s) 510
AjuI GAANNNNNNNTTGG 1 cut(s) 919
Alw26I GTCTC 1 cut(s) 842
AlwI GGATC 2 cut(s) 226, 451
AoxI GGCC 2 cut(s) 66, 634
ApoI RAATTY 3 cut(s) 182, 371, 836
AsiGI ACCGGT 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 168
Asp718I GGTACC 1 cut(s) 830
AspS9I GGNCC 2 cut(s) 67, 548
AsuHPI GGTGA 2 cut(s) 167, 655
AvaII GGWCC 1 cut(s) 548
BalI TGGCCA 1 cut(s) 636
BanI GGYRCC 1 cut(s) 830
BbsI GAAGAC 1 cut(s) 326
BccI CCATC 6 cut(s) 194, 279, 410, 539, 626, 881
BciT130I CCWGG 1 cut(s) 512
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 842
Bme1390I CCNGG 1 cut(s) 512
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 2 cut(s) 67, 548
BmiI GGNNCC 2 cut(s) 832, 875
BmrFI CCNGG 1 cut(s) 512
BmsI GCATC 2 cut(s) 321, 892
BpiI GAAGAC 1 cut(s) 326
BplI GAGNNNNNCTC 2 cut(s) 790, 822
BpmI CTGGAG 2 cut(s) 260, 494
BpuEI CTTGAG 1 cut(s) 344
BsaJI CCNNGG 4 cut(s) 226, 439, 511, 877
BsaWI WCCGGW 2 cut(s) 323, 524
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 2 cut(s) 277, 320
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 4 cut(s) 226, 439, 511, 877
BseGI GGATG 4 cut(s) 118, 205, 547, 666
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 821
BseNI ACTGG 2 cut(s) 277, 320
BshFI GGCC 2 cut(s) 68, 636
BshNI GGYRCC 1 cut(s) 830
BshTI ACCGGT 1 cut(s) 323
BsiSI CCGG 2 cut(s) 324, 525
BsmAI GTCTC 1 cut(s) 842
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 2 cut(s) 68, 636
Bsp143I GATC 5 cut(s) 75, 157, 218, 443, 464
Bsp19I CCATGG 3 cut(s) 226, 439, 877
BspANI GGCC 2 cut(s) 68, 636
BspCNI CTCAG 1 cut(s) 820
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 832, 875
BspPI GGATC 2 cut(s) 226, 451
BspT107I GGYRCC 1 cut(s) 830
BsrDI GCAATG 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 323
BsrI ACTGG 2 cut(s) 277, 320
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 4 cut(s) 226, 439, 511, 877
BssMI GATC 5 cut(s) 75, 157, 218, 443, 464
BssT1I CCWWGG 3 cut(s) 226, 439, 877
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 4 cut(s) 108, 119, 245, 563
Bst6I CTCTTC 1 cut(s) 877
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 2 cut(s) 396, 807
BstDSI CCRYGG 3 cut(s) 226, 439, 877
BstF5I GGATG 4 cut(s) 118, 205, 547, 666
BstKTI GATC 5 cut(s) 78, 160, 221, 446, 467
BstMAI GTCTC 1 cut(s) 842
BstMBI GATC 5 cut(s) 75, 157, 218, 443, 464
BstNI CCWGG 1 cut(s) 512
BstSCI CCNGG 1 cut(s) 510
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BsuRI GGCC 2 cut(s) 68, 636
BtgI CCRYGG 3 cut(s) 226, 439, 877
BtsCI GGATG 4 cut(s) 118, 205, 547, 666
BtsIMutI CAGTG 2 cut(s) 751, 874
Cac8I GCNNGC 1 cut(s) 336
CciI TCATGA 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 2 cut(s) 67, 548
Csp6I GTAC 4 cut(s) 175, 393, 729, 831
CspAI ACCGGT 1 cut(s) 323
CviAII CATG 4 cut(s) 161, 227, 440, 878
CviJI RGCY 5 cut(s) 68, 239, 435, 459, 636
CviKI_1 RGCY 5 cut(s) 68, 239, 435, 459, 636
CviQI GTAC 4 cut(s) 175, 393, 729, 831
DdeI CTNAG 2 cut(s) 396, 807
DpnI GATC 5 cut(s) 77, 159, 220, 445, 466
DpnII GATC 5 cut(s) 75, 157, 218, 443, 464
EaeI YGGCCR 1 cut(s) 634
Eam1104I CTCTTC 1 cut(s) 877
EarI CTCTTC 1 cut(s) 877
Eco130I CCWWGG 3 cut(s) 226, 439, 877
Eco32I GATATC 2 cut(s) 383, 933
Eco47I GGWCC 1 cut(s) 548
Eco57I CTGAAG 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 510
EcoRV GATATC 2 cut(s) 383, 933
EcoT14I CCWWGG 3 cut(s) 226, 439, 877
ErhI CCWWGG 3 cut(s) 226, 439, 877
FaeI CATG 4 cut(s) 164, 230, 443, 881
FatI CATG 4 cut(s) 160, 226, 439, 877
FauNDI CATATG 1 cut(s) 478
FbaI TGATCA 1 cut(s) 157
FokI GGATG 4 cut(s) 125, 212, 554, 673
GsuI CTGGAG 2 cut(s) 260, 494
HaeIII GGCC 2 cut(s) 68, 636
HapII CCGG 2 cut(s) 324, 525
Hin1II CATG 4 cut(s) 164, 230, 443, 881
HinfI GANTC 3 cut(s) 47, 411, 801
HpaII CCGG 2 cut(s) 324, 525
HphI GGTGA 2 cut(s) 167, 655
Hpy166II GTNNAC 2 cut(s) 145, 694
Hpy188I TCNGA 5 cut(s) 370, 464, 505, 702, 810
Hpy188III TCNNGA 2 cut(s) 161, 361
Hpy8I GTNNAC 2 cut(s) 145, 694
Hpy99I CGWCG 2 cut(s) 245, 563
HpyAV CCTTC 2 cut(s) 88, 158
HpyCH4III ACNGT 4 cut(s) 108, 119, 245, 563
HpyCH4IV ACGT 4 cut(s) 257, 649, 770, 788
HpyCH4V TGCA 3 cut(s) 62, 334, 476
HpyF3I CTNAG 2 cut(s) 396, 807
HpySE526I ACGT 4 cut(s) 257, 649, 770, 788
Hsp92II CATG 4 cut(s) 164, 230, 443, 881
KpnI GGTACC 1 cut(s) 834
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 5 cut(s) 75, 157, 218, 443, 464
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 7 cut(s) 290, 301, 337, 497, 524, 538, 665
LweI GCATC 2 cut(s) 321, 892
MaeII ACGT 4 cut(s) 257, 649, 770, 788
MaeIII GTNAC 4 cut(s) 305, 580, 643, 752
MalI GATC 5 cut(s) 77, 159, 220, 445, 466
MboI GATC 5 cut(s) 75, 157, 218, 443, 464
MboII GAAGA 4 cut(s) 331, 676, 894, 927
MfeI CAATTG 1 cut(s) 84
MflI RGATCY 1 cut(s) 443
MlsI TGGCCA 1 cut(s) 636
MluCI AATT 7 cut(s) 84, 182, 288, 344, 371, 553, 836
MluNI TGGCCA 1 cut(s) 636
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 825
MnlI CCTC 8 cut(s) 92, 146, 295, 368, 470, 521, 718, 742
Mox20I TGGCCA 1 cut(s) 636
MroXI GAANNNNTTC 1 cut(s) 168
MscI TGGCCA 1 cut(s) 636
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 744
Msp20I TGGCCA 1 cut(s) 636
MspI CCGG 2 cut(s) 324, 525
MspR9I CCNGG 1 cut(s) 512
MunI CAATTG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 168
MvaI CCWGG 1 cut(s) 512
NcoI CCATGG 3 cut(s) 226, 439, 877
NdeI CATATG 1 cut(s) 478
NdeII GATC 5 cut(s) 75, 157, 218, 443, 464
NlaIII CATG 4 cut(s) 164, 230, 443, 881
NlaIV GGNNCC 2 cut(s) 832, 875
NmuCI GTSAC 1 cut(s) 643
PagI TCATGA 1 cut(s) 160
PctI GAATGC 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 47, 801
PflFI GACNNNGTC 1 cut(s) 191
PinAI ACCGGT 1 cut(s) 323
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 510
PspGI CCWGG 1 cut(s) 510
PspN4I GGNNCC 2 cut(s) 832, 875
PspPI GGNCC 2 cut(s) 67, 548
PsuI RGATCY 1 cut(s) 443
PsyI GACNNNGTC 1 cut(s) 191
RsaI GTAC 4 cut(s) 176, 394, 730, 832
RsaNI GTAC 4 cut(s) 175, 393, 729, 831
RseI CAYNNNNRTG 1 cut(s) 744
SaqAI TTAA 1 cut(s) 213
Sau3AI GATC 5 cut(s) 75, 157, 218, 443, 464
Sau96I GGNCC 2 cut(s) 67, 548
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 1 cut(s) 512
SetI ASST 9 cut(s) 144, 157, 260, 360, 576, 652, 773, 791, 859
SfaNI GCATC 2 cut(s) 321, 892
SinI GGWCC 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 744
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 7 cut(s) 84, 182, 288, 344, 371, 553, 836
SspI AATATT 1 cut(s) 536
StyD4I CCNGG 1 cut(s) 510
StyI CCWWGG 3 cut(s) 226, 439, 877
TaaI ACNGT 4 cut(s) 108, 119, 245, 563
TaiI ACGT 4 cut(s) 260, 652, 773, 791
TaqI TCGA 4 cut(s) 78, 186, 414, 558
TasI AATT 7 cut(s) 84, 182, 288, 344, 371, 553, 836
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 2 cut(s) 47, 801
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 2 cut(s) 751, 874
TseFI GTSAC 1 cut(s) 643
Tsp45I GTSAC 1 cut(s) 643
TspDTI ATGAA 5 cut(s) 177, 297, 626, 677, 720
TspRI CASTG 2 cut(s) 751, 874
Tth111I GACNNNGTC 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 3 cut(s) 182, 371, 836
XcmI CCANNNNNNNNNTGG 2 cut(s) 841, 884
XmnI GAANNNNTTC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.