AT3G16440

jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000646
Physical Location & Seq
Forward (+)
5585872 .. 5587798
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16440.1

Sequence Viewer

Length: 903 bp
ATGGCTCAAAAGGTGGAAGCACAAGGAGGTATTGGAGGAGATGTATGGGATGATGGTGCTCACGACGGCGTTAGAAAGGTGCATGTAGGGCAAGGCCTTGATGGTGTTTCGTTTATCAATGTCGTGTACGAGAATGGTTCACAGGAAGTTGTAGGAGGTGAACATGGAAAGAAGTCACTAATTGGAATCGAAACGTTTGAGGTTGATGCAGACGACTACATCGTAGCAGTGCAGGTGACCTATGACAAAATATTTGGCTATGACTCCGACATCATCACATCCATAACCTTCTCTACATTCAAGGGAAAAACCTCGCCACCCTACGGATTAGATACCGAAAATAAGTTTGTACTCAAGGAAAAGAACGGTGGCAAACTTGTTGGGTTCCATGGACGCGCTGGCGAAATTCTATATGCTCTTGGAGCGTATTTTACTACAACCACAACTCCTTTGACTCCTGCCAAGAAACTACCGGCTGTTGGTGGTGACGAAGGAACTGCCTGGGATGATGGTGCTTTCGATGGTGTTAAGAAAGTGTATATAGGGCAAGCCCAAGATGGTATATCGGCCGTGAAGTTTGTGTACGATAAGGGCGCCGAGGATATTGTAGGAGATGAACATGGAAATGATACTCTACTCGGATTTGAAGAGTTCCAACTTGACTATCCAAGTGAATATATTACTGCAGTTGAAGGCACATATGACAAAATATTTGGTTTTGAGACTGAAGTCATAAATATGCTTAGGTTCAAAACTAATAAGAAAACGTCTCCTCCCTTTGGAATTGAAGCTGGCACAGCCTTCGAACTCAAAGAAGAAGGTTGCAAGATCGTCGGGTTTCATGGAAAAGTAAGTGCGGTGCTTCATCAGTTTGGAGTCCATATCCTTCCTGTCACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

300

Amino Acids

32.34

Weight (kDa)

4.79

Isoelectric Point (pI)

21.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 5 - 143 3e-35 Jacalin-like lectin domain
Jacalin PF01419 159 - 294 4.1e-41 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 223
Acc36I ACCTGC 1 cut(s) 223
AccB1I GGYRCC 1 cut(s) 593
AccII CGCG 1 cut(s) 396
AciI CCGC 1 cut(s) 857
AclI AACGTT 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 567
AcsI RAATTY 1 cut(s) 405
AcuI CTGAAG 1 cut(s) 747
AcyI GRCGYC 1 cut(s) 594
AfaI GTAC 3 cut(s) 128, 351, 584
AfiI CCNNNNNNNGG 3 cut(s) 323, 479, 779
AgsI TTSAA 5 cut(s) 301, 647, 692, 751, 788
AjnI CCWGG 1 cut(s) 500
AluBI AGCT 1 cut(s) 791
AluI AGCT 1 cut(s) 791
Alw21I GWGCWC 1 cut(s) 61
Alw26I GTCTC 2 cut(s) 716, 774
AoxI GGCC 2 cut(s) 94, 567
ApoI RAATTY 1 cut(s) 405
ArsI GACNNNNNNTTYG 4 cut(s) 236, 268, 695, 727
AspLEI GCGC 2 cut(s) 398, 596
AsuHPI GGTGA 4 cut(s) 170, 247, 497, 886
AsuII TTCGAA 1 cut(s) 804
BanI GGYRCC 1 cut(s) 593
BarI GAAGNNNNNNTAC 2 cut(s) 566, 598
Bbv12I GWGCWC 1 cut(s) 61
BccI CCATC 5 cut(s) 47, 95, 503, 515, 551
BceAI ACGGC 2 cut(s) 82, 554
BcgI CGANNNNNNTGC 6 cut(s) 479, 513, 784, 814, 818, 848
BciT130I CCWGG 1 cut(s) 502
BcoDI GTCTC 2 cut(s) 716, 774
BfmI CTRYAG 1 cut(s) 684
BfoI RGCGCY 1 cut(s) 597
BfuAI ACCTGC 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 502
BmiI GGNNCC 2 cut(s) 386, 595
BmrFI CCNGG 1 cut(s) 502
BmsI GCATC 1 cut(s) 196
BoxI GACNNNNGTC 1 cut(s) 728
Bpu10I CCTNAGC 1 cut(s) 743
Bpu14I TTCGAA 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 594
BsaJI CCNNGG 3 cut(s) 388, 501, 597
BsaXI ACNNNNNCTCC 6 cut(s) 27, 57, 430, 460, 757, 787
Bsc4I CCNNNNNNNGG 3 cut(s) 323, 479, 779
Bse118I RCCGGY 1 cut(s) 472
BseBI CCWGG 1 cut(s) 502
BseDI CCNNGG 3 cut(s) 388, 501, 597
BseGI GGATG 3 cut(s) 55, 278, 511
BseLI CCNNNNNNNGG 3 cut(s) 323, 479, 779
BseRI GAGGAG 2 cut(s) 51, 762
BseX3I CGGCCG 1 cut(s) 567
BsgI GTGCAG 1 cut(s) 251
Bsh1236I CGCG 1 cut(s) 396
Bsh1285I CGRYCG 1 cut(s) 570
BshFI GGCC 2 cut(s) 96, 569
BshNI GGYRCC 1 cut(s) 593
BsiEI CGRYCG 1 cut(s) 570
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 1 cut(s) 473
BslI CCNNNNNNNGG 3 cut(s) 323, 479, 779
BsmAI GTCTC 2 cut(s) 716, 774
BsmBI CGTCTC 1 cut(s) 774
BsnI GGCC 2 cut(s) 96, 569
Bsp119I TTCGAA 1 cut(s) 804
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 1 cut(s) 828
Bsp19I CCATGG 1 cut(s) 388
BspACI CCGC 1 cut(s) 857
BspANI GGCC 2 cut(s) 96, 569
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 2 cut(s) 386, 595
BspMAI CTGCAG 1 cut(s) 688
BspMI ACCTGC 1 cut(s) 223
BspT104I TTCGAA 1 cut(s) 804
BspT107I GGYRCC 1 cut(s) 593
BsrFI RCCGGY 1 cut(s) 472
BssAI RCCGGY 1 cut(s) 472
BssECI CCNNGG 3 cut(s) 388, 501, 597
BssMI GATC 1 cut(s) 828
BssNI GRCGYC 1 cut(s) 594
BssT1I CCWWGG 1 cut(s) 388
Bst2UI CCWGG 1 cut(s) 502
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 642
BstACI GRCGYC 1 cut(s) 594
BstBI TTCGAA 1 cut(s) 804
BstC8I GCNNGC 3 cut(s) 400, 549, 793
BstDEI CTNAG 1 cut(s) 743
BstDSI CCRYGG 1 cut(s) 388
BstEII GGTNACC 1 cut(s) 235
BstF5I GGATG 3 cut(s) 55, 278, 511
BstFNI CGCG 1 cut(s) 396
BstH2I RGCGCY 1 cut(s) 597
BstHHI GCGC 2 cut(s) 398, 596
BstKTI GATC 1 cut(s) 831
BstMAI GTCTC 2 cut(s) 716, 774
BstMBI GATC 1 cut(s) 828
BstMCI CGRYCG 1 cut(s) 570
BstMWI GCNNNNNNNGC 3 cut(s) 88, 422, 797
BstNI CCWGG 1 cut(s) 502
BstNSI RCATGY 1 cut(s) 86
BstPAI GACNNNNGTC 1 cut(s) 728
BstPI GGTNACC 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 500
BstSFI CTRYAG 1 cut(s) 684
BstUI CGCG 1 cut(s) 396
BstZI CGGCCG 1 cut(s) 567
BsuRI GGCC 2 cut(s) 96, 569
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 3 cut(s) 55, 278, 511
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 223
Cac8I GCNNGC 3 cut(s) 400, 549, 793
CfoI GCGC 2 cut(s) 398, 596
Cfr10I RCCGGY 1 cut(s) 472
CseI GACGC 1 cut(s) 402
Csp6I GTAC 3 cut(s) 127, 350, 583
CviAII CATG 5 cut(s) 83, 164, 389, 620, 842
CviJI RGCY 8 cut(s) 5, 96, 258, 476, 551, 569, 791, 800
CviKI_1 RGCY 8 cut(s) 5, 96, 258, 476, 551, 569, 791, 800
CviQI GTAC 3 cut(s) 127, 350, 583
DdeI CTNAG 1 cut(s) 743
DinI GGCGCC 1 cut(s) 595
DpnI GATC 1 cut(s) 830
DpnII GATC 1 cut(s) 828
EaeI YGGCCR 1 cut(s) 567
EagI CGGCCG 1 cut(s) 567
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
EclXI CGGCCG 1 cut(s) 567
Eco130I CCWWGG 1 cut(s) 388
Eco147I AGGCCT 1 cut(s) 96
Eco52I CGGCCG 1 cut(s) 567
Eco57I CTGAAG 1 cut(s) 747
Eco91I GGTNACC 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 500
EcoT14I CCWWGG 1 cut(s) 388
EgeI GGCGCC 1 cut(s) 595
EheI GGCGCC 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 388
Esp3I CGTCTC 1 cut(s) 774
FaeI CATG 5 cut(s) 86, 167, 392, 623, 845
FatI CATG 5 cut(s) 82, 163, 388, 619, 841
FauNDI CATATG 1 cut(s) 700
FokI GGATG 3 cut(s) 62, 265, 518
GlaI GCGC 2 cut(s) 397, 595
HaeII RGCGCY 1 cut(s) 597
HaeIII GGCC 2 cut(s) 96, 569
HapII CCGG 1 cut(s) 473
HgaI GACGC 1 cut(s) 402
HhaI GCGC 2 cut(s) 398, 596
Hin1I GRCGYC 1 cut(s) 594
Hin1II CATG 5 cut(s) 86, 167, 392, 623, 845
Hin6I GCGC 2 cut(s) 396, 594
HinP1I GCGC 2 cut(s) 396, 594
HinfI GANTC 4 cut(s) 186, 263, 454, 876
HpaII CCGG 1 cut(s) 473
HphI GGTGA 4 cut(s) 170, 247, 497, 886
Hpy166II GTNNAC 4 cut(s) 127, 140, 161, 583
Hpy188I TCNGA 2 cut(s) 268, 641
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 4 cut(s) 127, 140, 161, 583
Hpy99I CGWCG 2 cut(s) 68, 836
HpyAV CCTTC 6 cut(s) 298, 485, 686, 811, 812, 896
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 2 cut(s) 194, 767
HpyCH4V TGCA 5 cut(s) 82, 209, 232, 686, 825
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 422, 797
HpyF3I CTNAG 1 cut(s) 743
HpySE526I ACGT 2 cut(s) 194, 767
Hsp92I GRCGYC 1 cut(s) 594
Hsp92II CATG 5 cut(s) 86, 167, 392, 623, 845
HspAI GCGC 2 cut(s) 396, 594
KasI GGCGCC 1 cut(s) 593
Kzo9I GATC 1 cut(s) 828
LmnI GCTCC 1 cut(s) 422
LpnPI CCDG 8 cut(s) 128, 218, 384, 471, 486, 487, 514, 777
LweI GCATC 1 cut(s) 196
MaeII ACGT 2 cut(s) 194, 767
MaeIII GTNAC 4 cut(s) 174, 235, 485, 892
MalI GATC 1 cut(s) 830
MboI GATC 1 cut(s) 828
MboII GAAGA 2 cut(s) 659, 827
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 3 cut(s) 180, 405, 783
Mly113I GGCGCC 1 cut(s) 594
MlyI GAGTC 3 cut(s) 257, 448, 885
MmeI TCCRAC 2 cut(s) 291, 679
MnlI CCTC 7 cut(s) 20, 29, 149, 193, 322, 592, 783
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 2 cut(s) 624, 737
MspI CCGG 1 cut(s) 473
MspR9I CCNGG 1 cut(s) 502
MvaI CCWGG 1 cut(s) 502
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 3 cut(s) 88, 422, 797
NarI GGCGCC 1 cut(s) 594
NcoI CCATGG 1 cut(s) 388
NdeI CATATG 1 cut(s) 700
NdeII GATC 1 cut(s) 828
NlaIII CATG 5 cut(s) 86, 167, 392, 623, 845
NlaIV GGNNCC 2 cut(s) 386, 595
NmeAIII GCCGAG 1 cut(s) 622
NmuCI GTSAC 4 cut(s) 174, 235, 485, 892
NspI RCATGY 1 cut(s) 86
NspV TTCGAA 1 cut(s) 804
PaqCI CACCTGC 1 cut(s) 223
PceI AGGCCT 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PfeI GAWTC 1 cut(s) 186
PleI GAGTC 3 cut(s) 257, 448, 884
PluTI GGCGCC 1 cut(s) 597
PpsI GAGTC 3 cut(s) 257, 448, 884
PshAI GACNNNNGTC 1 cut(s) 728
Psp1406I AACGTT 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 500
PspEI GGTNACC 1 cut(s) 235
PspGI CCWGG 1 cut(s) 500
PspN4I GGNNCC 2 cut(s) 386, 595
PstI CTGCAG 1 cut(s) 688
RsaI GTAC 3 cut(s) 128, 351, 584
RsaNI GTAC 3 cut(s) 127, 350, 583
RseI CAYNNNNRTG 2 cut(s) 624, 737
SaqAI TTAA 1 cut(s) 528
Sau3AI GATC 1 cut(s) 828
SchI GAGTC 3 cut(s) 257, 448, 885
ScrFI CCNGG 1 cut(s) 502
SduI GDGCHC 1 cut(s) 61
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 684
SfoI GGCGCC 1 cut(s) 595
SfuI TTCGAA 1 cut(s) 804
SmiMI CAYNNNNRTG 2 cut(s) 624, 737
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 3 cut(s) 180, 405, 783
SseBI AGGCCT 1 cut(s) 96
SsiI CCGC 1 cut(s) 857
SspDI GGCGCC 1 cut(s) 593
SspI AATATT 2 cut(s) 252, 711
StuI AGGCCT 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 500
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 2 cut(s) 197, 770
TaqI TCGA 3 cut(s) 189, 519, 804
TasI AATT 3 cut(s) 180, 405, 783
TatI WGTACW 1 cut(s) 349
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 4 cut(s) 174, 235, 485, 892
Tsp45I GTSAC 4 cut(s) 174, 235, 485, 892
TspDTI ATGAA 3 cut(s) 630, 830, 854
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 1 cut(s) 234
XapI RAATTY 1 cut(s) 405
XceI RCATGY 1 cut(s) 86
XcmI CCANNNNNNNNNTGG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.