AT2G39330

jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000646
Physical Location & Seq
Reverse (-)
16419483 .. 16422158
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39330.2

Sequence Viewer

Length: 1380 bp
ATGGCGAAAATCTACCGGAAGTTGACAGGCTACGGTGGTGAAGGAGGGCGTGAATGGGACGATGATGTATATGAGGGTGTAAGAAAAGTGTATGTAGGACAAGATATCAATCGTATCACTTACGTCAAATTCGAGTATGTGAAGGAAGACGGCCAAGTCGTAACAACTGAATATGGGAAAATCATTCAACAACCCAAAGAGTTTGTACTTCAATATCCGGACGAACATATCATAGCGGTGGAAGGAAACTATCGCGGAGTGGCTCTATGTGCCACAGAGGTGATCACAAACCTCGTCTTCAAGACCTCAAAGGGTAGAAAGTCACCACTGTTTGGTCCAAACTTGCTTGGAATTACGACCGGTACAAAGTTCGTTATTGAGGATGGAGGAAAGAAGATCGTAGGGTTTCATGGACGGTCGGGTAATGCTCTCGACGCGCTTGGAGTTTACTTTGTACATGGCTCTCTAACAACGTCTCCGCCTGTTTACAAGCTGGATGCCCAAGGTGGTACAGACGGGCGTGTTTGGGATGATGGTTCTTACGACGGCGTTAAATCGCTGCGTATTGGTCAAGATAATTCTCGTATTACTTATTTAGAGTTCGAGTACGAGAAAGGCGGTAAGTTAGAGACATGTCGCCATGGGGTGAAACAAGAAAGATCACTGAAGTTTGAGCTTAACCCGGATGAATACATCAAATCGGTGGAAGCAACCTATGATAAACCGGACATTTTCCGCAATGTCGTCATTACATCGCTTACATTTGAAACATCGAAGGGGAGAACGTCATTCTCTGGGTATAAGGGAGGTAAGAAGTTTAAGCTAGAGCAAAAGGGTCGTAGGCTTGTCGGGTTCCATGGAAAGGAAGGTTCAGCTATTGATGCCCTTGGAGCATATTTTGCACCTATTCCTACTCCGACTCCTATAATTCCAGCCAAGAAACTACCAGCAATAGGCGGCAGCGGAGGAGTTGCATGGGATGATGGTGTCTACGATGGTGTAAGGAAGATACTTGTAGGACAAGGTAACGATGGTGTAGCCTTTGTCAAGTTTGAATACAATAAAGGAAAAGATCTTGTATCTGGAGATGACCATGGGAAGATGACATTACTCGGAACTGAAGAGTTTGTGCTTGAAGATGGTGAATATCTCACGGCCATAGATGGCTATTACGATAAGATTTTCGGAGTCGAGACACCAATGATTATCTGTCTTCAGTTTAAGACGAACAAAAGGGAGTCAACTCCATTCGGAATGGATTCGGGTGAGAAGTTCTCGCTTGGAGAGAAAGGCCACAAGATCGTCGGATTCCACGGACAAGCTAGTGATGTTGTTCACAGCATCGGAGTCACTGTCGTGCCCATTACCAACACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0009506 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

459

Amino Acids

50.44

Weight (kDa)

6.78

Isoelectric Point (pI)

20.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 59 - 198 1e-34 Jacalin-like lectin domain
Jacalin PF01419 214 - 347 2.2e-36 Jacalin-like lectin domain
Jacalin PF01419 365 - 498 3.4e-39 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
AccB7I CCANNNNNTGG 1 cut(s) 332
AccI GTMKAC 1 cut(s) 990
AccII CGCG 2 cut(s) 255, 437
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 7 cut(s) 236, 255, 479, 618, 736, 957, 963
AcoI YGGCCR 2 cut(s) 151, 1155
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 3 cut(s) 686, 1140, 1199
AdeI CACNNNGTG 1 cut(s) 1377
AfaI GTAC 5 cut(s) 207, 364, 456, 511, 608
AfiI CCNNNNNNNGG 3 cut(s) 332, 862, 953
AflIII ACRYGT 1 cut(s) 632
AgeI ACCGGT 1 cut(s) 359
AgsI TTSAA 6 cut(s) 188, 212, 301, 767, 1055, 1136
AleI CACNNNNGTG 2 cut(s) 278, 1355
AluBI AGCT 5 cut(s) 493, 676, 823, 875, 1322
AluI AGCT 5 cut(s) 493, 676, 823, 875, 1322
Alw26I GTCTC 3 cut(s) 480, 623, 1187
Aor13HI TCCGGA 1 cut(s) 217
AoxI GGCC 3 cut(s) 151, 1155, 1291
ApeKI GCWGC 2 cut(s) 559, 960
ApoI RAATTY 1 cut(s) 128
AsiGI ACCGGT 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 1258
AspLEI GCGC 1 cut(s) 439
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 683
AsuHPI GGTGA 6 cut(s) 50, 292, 315, 658, 1154, 1277
AvaII GGWCC 1 cut(s) 335
BaeGI GKGCMC 1 cut(s) 1362
BbsI GAAGAC 3 cut(s) 153, 289, 1205
BbvI GCAGC 2 cut(s) 546, 972
BccI CCATC 7 cut(s) 377, 527, 977, 989, 1025, 1133, 1157
BceAI ACGGC 3 cut(s) 166, 562, 1170
BcgI CGANNNNNNTGC 2 cut(s) 818, 852
BclI TGATCA 1 cut(s) 282
BcnI CCSGG 1 cut(s) 683
BcoDI GTCTC 3 cut(s) 480, 623, 1187
BfaI CTAG 2 cut(s) 824, 1323
BglII AGATCT 1 cut(s) 1072
BisI GCNGC 3 cut(s) 560, 958, 961
BlsI GCNGC 3 cut(s) 561, 959, 962
Bme1390I CCNGG 1 cut(s) 683
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 854
BmrFI CCNGG 1 cut(s) 683
BmsI GCATC 3 cut(s) 487, 871, 1350
BpiI GAAGAC 3 cut(s) 153, 289, 1205
BplI GAGNNNNNCTC 2 cut(s) 1259, 1291
BpmI CTGGAG 1 cut(s) 1104
BpuMI CCSGG 1 cut(s) 683
BsaBI GATNNNNATC 1 cut(s) 108
BsaJI CCNNGG 6 cut(s) 502, 640, 856, 886, 1093, 1312
BsaWI WCCGGW 4 cut(s) 15, 217, 359, 724
BsaXI ACNNNNNCTCC 6 cut(s) 460, 490, 904, 934, 1338, 1368
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 862, 953
Bse118I RCCGGY 1 cut(s) 359
Bse3DI GCAATG 1 cut(s) 745
Bse8I GATNNNNATC 1 cut(s) 108
BseAI TCCGGA 1 cut(s) 217
BseDI CCNNGG 6 cut(s) 502, 640, 856, 886, 1093, 1312
BseGI GGATG 5 cut(s) 388, 502, 535, 691, 985
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 3 cut(s) 332, 862, 953
BseMI GCAATG 1 cut(s) 745
BseRI GAGGAG 1 cut(s) 981
BseSI GKGCMC 1 cut(s) 1362
BseXI GCAGC 2 cut(s) 546, 972
Bsh1236I CGCG 2 cut(s) 255, 437
Bsh1285I CGRYCG 2 cut(s) 360, 419
BshFI GGCC 3 cut(s) 153, 1157, 1293
BshTI ACCGGT 1 cut(s) 359
BsiEI CGRYCG 2 cut(s) 360, 419
BsiSI CCGG 5 cut(s) 16, 218, 360, 683, 725
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 3 cut(s) 332, 862, 953
BsmAI GTCTC 3 cut(s) 480, 623, 1187
BsmBI CGTCTC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 3 cut(s) 153, 1157, 1293
Bsp1286I GDGCHC 1 cut(s) 1362
Bsp13I TCCGGA 1 cut(s) 217
Bsp1407I TGTACA 1 cut(s) 454
Bsp143I GATC 5 cut(s) 282, 396, 659, 1072, 1299
Bsp19I CCATGG 3 cut(s) 640, 856, 1093
BspACI CCGC 7 cut(s) 236, 255, 479, 618, 736, 957, 963
BspANI GGCC 3 cut(s) 153, 1157, 1293
BspEI TCCGGA 1 cut(s) 217
BspFNI CGCG 2 cut(s) 255, 437
BspLI GGNNCC 1 cut(s) 854
BsrDI GCAATG 1 cut(s) 745
BsrFI RCCGGY 1 cut(s) 359
BsrGI TGTACA 1 cut(s) 454
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 6 cut(s) 502, 640, 856, 886, 1093, 1312
BssMI GATC 5 cut(s) 282, 396, 659, 1072, 1299
BssT1I CCWWGG 5 cut(s) 502, 640, 856, 886, 1093
Bst4CI ACNGT 4 cut(s) 35, 330, 417, 1354
Bst6I CTCTTC 1 cut(s) 1116
BstAPI GCANNNNNTGC 1 cut(s) 899
BstAUI TGTACA 1 cut(s) 454
BstDSI CCRYGG 4 cut(s) 640, 856, 1093, 1312
BstF5I GGATG 5 cut(s) 388, 502, 535, 691, 985
BstFNI CGCG 2 cut(s) 255, 437
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 5 cut(s) 285, 399, 662, 1075, 1302
BstMAI GTCTC 3 cut(s) 480, 623, 1187
BstMBI GATC 5 cut(s) 282, 396, 659, 1072, 1299
BstMCI CGRYCG 2 cut(s) 360, 419
BstMWI GCNNNNNNNGC 5 cut(s) 269, 434, 881, 890, 899
BstNSI RCATGY 1 cut(s) 636
BstSCI CCNGG 1 cut(s) 681
BstSLI GKGCMC 1 cut(s) 1362
BstUI CGCG 2 cut(s) 255, 437
BstV1I GCAGC 2 cut(s) 546, 972
BstV2I GAAGAC 3 cut(s) 153, 289, 1205
BstX2I RGATCY 1 cut(s) 1072
BstYI RGATCY 1 cut(s) 1072
BsuRI GGCC 3 cut(s) 153, 1157, 1293
BtgI CCRYGG 4 cut(s) 640, 856, 1093, 1312
BtgZI GCGATG 1 cut(s) 738
BtsCI GGATG 5 cut(s) 388, 502, 535, 691, 985
BtsIMutI CAGTG 3 cut(s) 326, 662, 1350
CfoI GCGC 1 cut(s) 439
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 1 cut(s) 335
CseI GACGC 1 cut(s) 443
Csp6I GTAC 5 cut(s) 206, 363, 455, 510, 607
CspAI ACCGGT 1 cut(s) 359
CviAII CATG 7 cut(s) 410, 458, 633, 641, 857, 975, 1094
CviQI GTAC 5 cut(s) 206, 363, 455, 510, 607
DpnI GATC 5 cut(s) 284, 398, 661, 1074, 1301
DpnII GATC 5 cut(s) 282, 396, 659, 1072, 1299
DraIII CACNNNGTG 1 cut(s) 1377
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
EaeI YGGCCR 2 cut(s) 151, 1155
Eam1104I CTCTTC 1 cut(s) 1116
EarI CTCTTC 1 cut(s) 1116
EciI GGCGGA 1 cut(s) 468
Eco130I CCWWGG 5 cut(s) 502, 640, 856, 886, 1093
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 335
Eco57I CTGAAG 3 cut(s) 686, 1140, 1199
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 5 cut(s) 502, 640, 856, 886, 1093
ErhI CCWWGG 5 cut(s) 502, 640, 856, 886, 1093
Esp3I CGTCTC 1 cut(s) 480
FaeI CATG 7 cut(s) 413, 461, 636, 644, 860, 978, 1097
FaqI GGGAC 1 cut(s) 71
FatI CATG 7 cut(s) 409, 457, 632, 640, 856, 974, 1093
FbaI TGATCA 1 cut(s) 282
FblI GTMKAC 1 cut(s) 990
Fnu4HI GCNGC 3 cut(s) 560, 958, 961
FokI GGATG 5 cut(s) 395, 509, 542, 698, 992
Fsp4HI GCNGC 3 cut(s) 560, 958, 961
FspBI CTAG 2 cut(s) 824, 1323
GlaI GCGC 1 cut(s) 438
GluI GCNGC 3 cut(s) 560, 958, 961
GsuI CTGGAG 1 cut(s) 1104
HaeIII GGCC 3 cut(s) 153, 1157, 1293
HapII CCGG 5 cut(s) 16, 218, 360, 683, 725
HgaI GACGC 1 cut(s) 443
HhaI GCGC 1 cut(s) 439
Hin1II CATG 7 cut(s) 413, 461, 636, 644, 860, 978, 1097
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HincII GTYRAC 2 cut(s) 24, 1242
HindII GTYRAC 2 cut(s) 24, 1242
HinfI GANTC 6 cut(s) 919, 1188, 1238, 1259, 1308, 1347
HpaII CCGG 5 cut(s) 16, 218, 360, 683, 725
HphI GGTGA 6 cut(s) 50, 292, 315, 658, 1154, 1277
Hpy166II GTNNAC 6 cut(s) 24, 448, 487, 991, 1242, 1336
Hpy188I TCNGA 6 cut(s) 918, 1115, 1187, 1253, 1307, 1346
Hpy188III TCNNGA 6 cut(s) 218, 301, 431, 572, 1083, 1192
Hpy8I GTNNAC 6 cut(s) 24, 448, 487, 991, 1242, 1336
Hpy99I CGWCG 3 cut(s) 437, 548, 1307
HpyAV CCTTC 5 cut(s) 35, 136, 236, 769, 860
HpyCH4III ACNGT 4 cut(s) 35, 330, 417, 1354
HpyCH4IV ACGT 3 cut(s) 123, 473, 785
HpyCH4V TGCA 2 cut(s) 902, 974
HpyF10VI GCNNNNNNNGC 5 cut(s) 269, 434, 881, 890, 899
HpySE526I ACGT 3 cut(s) 123, 473, 785
Hsp92II CATG 7 cut(s) 413, 461, 636, 644, 860, 978, 1097
HspAI GCGC 1 cut(s) 437
Kpn2I TCCGGA 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 5 cut(s) 282, 396, 659, 1072, 1299
LmnI GCTCC 1 cut(s) 890
Lsp1109I GCAGC 2 cut(s) 546, 972
LweI GCATC 3 cut(s) 487, 871, 1350
MaeI CTAG 2 cut(s) 824, 1323
MaeII ACGT 3 cut(s) 123, 473, 785
MaeIII GTNAC 4 cut(s) 160, 321, 1025, 1348
MalI GATC 5 cut(s) 284, 398, 661, 1074, 1301
MboI GATC 5 cut(s) 282, 396, 659, 1072, 1299
MboII GAAGA 8 cut(s) 158, 289, 406, 1018, 1111, 1133, 1148, 1205
MflI RGATCY 1 cut(s) 1072
MhlI GDGCHC 1 cut(s) 1362
MluCI AATT 4 cut(s) 128, 351, 577, 927
MlyI GAGTC 4 cut(s) 913, 1197, 1247, 1356
MmeI TCCRAC 2 cut(s) 941, 1285
MnlI CCTC 9 cut(s) 38, 67, 271, 302, 316, 373, 380, 800, 959
MroI TCCGGA 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 1258
MseI TTAA 4 cut(s) 552, 678, 819, 1221
MslI CAYNNNNRTG 3 cut(s) 236, 278, 1355
MspA1I CMGCKG 1 cut(s) 963
MspI CCGG 5 cut(s) 16, 218, 360, 683, 725
MspR9I CCNGG 1 cut(s) 683
MvnI CGCG 2 cut(s) 255, 437
MwoI GCNNNNNNNGC 5 cut(s) 269, 434, 881, 890, 899
NciI CCSGG 1 cut(s) 683
NcoI CCATGG 3 cut(s) 640, 856, 1093
NdeII GATC 5 cut(s) 282, 396, 659, 1072, 1299
NlaIII CATG 7 cut(s) 413, 461, 636, 644, 860, 978, 1097
NlaIV GGNNCC 1 cut(s) 854
NmuCI GTSAC 2 cut(s) 321, 1348
NspI RCATGY 1 cut(s) 636
OliI CACNNNNGTG 2 cut(s) 278, 1355
PciI ACATGT 1 cut(s) 632
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 156
PdmI GAANNNNTTC 1 cut(s) 1258
PfeI GAWTC 2 cut(s) 1259, 1308
PflMI CCANNNNNTGG 1 cut(s) 332
PinAI ACCGGT 1 cut(s) 359
PkrI GCNGC 3 cut(s) 561, 959, 962
PleI GAGTC 4 cut(s) 913, 1196, 1246, 1355
PpsI GAGTC 4 cut(s) 913, 1196, 1246, 1355
PscI ACATGT 1 cut(s) 632
PspN4I GGNNCC 1 cut(s) 854
PspPI GGNCC 1 cut(s) 335
PsuI RGATCY 1 cut(s) 1072
RsaI GTAC 5 cut(s) 207, 364, 456, 511, 608
RsaNI GTAC 5 cut(s) 206, 363, 455, 510, 607
RseI CAYNNNNRTG 3 cut(s) 236, 278, 1355
SaqAI TTAA 4 cut(s) 552, 678, 819, 1221
SatI GCNGC 3 cut(s) 560, 958, 961
Sau3AI GATC 5 cut(s) 282, 396, 659, 1072, 1299
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 4 cut(s) 913, 1197, 1247, 1356
ScrFI CCNGG 1 cut(s) 683
SduI GDGCHC 1 cut(s) 1362
SfaNI GCATC 3 cut(s) 487, 871, 1350
SinI GGWCC 1 cut(s) 335
SmiMI CAYNNNNRTG 3 cut(s) 236, 278, 1355
Sse9I AATT 4 cut(s) 128, 351, 577, 927
SsiI CCGC 7 cut(s) 236, 255, 479, 618, 736, 957, 963
SspMI CTAG 2 cut(s) 824, 1323
StyD4I CCNGG 1 cut(s) 681
StyI CCWWGG 5 cut(s) 502, 640, 856, 886, 1093
TaaI ACNGT 4 cut(s) 35, 330, 417, 1354
TaiI ACGT 3 cut(s) 126, 476, 788
TaqI TCGA 5 cut(s) 132, 432, 603, 773, 1191
TasI AATT 4 cut(s) 128, 351, 577, 927
TatI WGTACW 2 cut(s) 205, 454
TauI GCSGC 1 cut(s) 960
TfiI GAWTC 2 cut(s) 1259, 1308
Tru1I TTAA 4 cut(s) 552, 678, 819, 1221
Tru9I TTAA 4 cut(s) 552, 678, 819, 1221
TscAI CASTG 3 cut(s) 333, 669, 1357
TseFI GTSAC 2 cut(s) 321, 1348
TseI GCWGC 2 cut(s) 559, 960
Tsp45I GTSAC 2 cut(s) 321, 1348
TspDTI ATGAA 2 cut(s) 398, 702
TspGWI ACGGA 1 cut(s) 1329
TspRI CASTG 3 cut(s) 333, 669, 1357
Van91I CCANNNNNTGG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 335
XapI RAATTY 1 cut(s) 128
XceI RCATGY 1 cut(s) 636
XmiI GTMKAC 1 cut(s) 990
XmnI GAANNNNTTC 1 cut(s) 1258
XspI CTAG 2 cut(s) 824, 1323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.