AT2G25980

Jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000646
Physical Location & Seq
Reverse (-)
11077438 .. 11079968
2531 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G25980.1

Sequence Viewer

Length: 1350 bp
ATGGCCCAAAGGTTGGAGGCAAAAGGCGGAAAGGGAGGGAATCAATGGGATGATGGAGCCGACCATGAAAATGTAACAAAGATACATGTACGAGGTGGTCTTGAAGGAATCCAATTCATCAAGTTTGAGTATGTCAAAGCTGGACAAACAGTTGTTGGACCAATTCATGGTGTCTCGGGTAAAGGTTTCACACAAACGTTTGAGATTAATCATCTCAATGGCGAACATGTGGTGTCAGTAAAAGGTTGCTATGATAACATATCCGGTGTGATCCAAGCACTTCAATTCGAAACCAATCAAAGGAGTTCTGAAGTCATGGGATACGATGACACTGGCACTAAGTTTACACTTGAAATCAGTGGAAACAAAATCACTGGGTTCCATGGATCTGCTGACGCAAACCTAAAATCTCTTGGAGCTTATTTCACACCACCTCCTCCTATTAAACAGGAATACCAAGGTGGTACTGGAGGCAGCCCATGGGACCATGGTATTTACACCGGCATAAGAAAAGTCTATGTTACATTTAGTCCCGTTAGCATATCGCATATCAAGGTCGACTACGACAAAGATGGAAAAGTGGAAACGCGTCAAGACGGGGACATGCTTGGAGAAAATAGGGTCCAAGGACAACCAAACGAGTTTGTAGTGGACTATCCATATGAATATATTACATCAATAGAAGTGACCTGTGACAAAGTCTCTGGCAATACAAACCGAGTTAGGTCGTTGAGTTTCAAGACATCAAAAGACAGAACATCTCCTACATATGGACGTAAGAGCGAGCGAACTTTCGTGTTTGAGAGCAAAGGTAGGGCTCTTGTTGGGCTCCATGGAAGGTGTTGTTGGGCTATTGATGCTCTAGGTGCACATTTTGGTGCGCCTCCTATTCCTCCACCTCCTCCCACGGAGAAACTACAAGGATCAGGTGGTGACGGAGGAGAATCATGGGACGATGGAGCTTTCGACGGTGTGAGAAAGATATACGTGGGACAAGGTGAGAATGGTATCGCATCTGTCAAGTTTGTGTATGACAAGAACAACCAGTTGGTACTAGGAGAAGAGCATGGAAAGCATACTTTGCTTGGATACGAAGAGTTCGAGTTGGACTATCCGAGTGAATACATCACAGCGGTAGAGGGTTATTATGATAAAGTGTTTGGTAGTGAATCTTCAGTAATAGTCATGCTTAAGTTCAAGACCAATAAACGAACCTCCCCGCCTTATGGAATGGATGCTGGCGTTAGCTTCATACTCGGGAAGGAAGGTCACAAAGTGGTAGGGTTCCATGGAAAAGCTAGTCCCGAGCTCTATCAGATTGGGGTCACTGTTGCCCCAATCACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin TIR

Protein Analysis

449

Amino Acids

48.98

Weight (kDa)

6.08

Isoelectric Point (pI)

25.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 6 - 141 1.4e-36 Jacalin-like lectin domain
Jacalin PF01419 152 - 291 2.2e-32 Jacalin-like lectin domain
Jacalin PF01419 309 - 442 2.3e-41 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 13, 167
AccI GTMKAC 1 cut(s) 558
AccII CGCG 1 cut(s) 589
AciI CCGC 3 cut(s) 27, 1133, 1220
AclI AACGTT 1 cut(s) 197
AclWI GGATC 3 cut(s) 265, 394, 931
AcuI CTGAAG 2 cut(s) 330, 1158
AdeI CACNNNGTG 2 cut(s) 1276, 1347
AfaI GTAC 3 cut(s) 90, 466, 1053
AfiI CCNNNNNNNGG 5 cut(s) 13, 167, 300, 770, 1226
AflII CTTAAG 1 cut(s) 1190
AflIII ACRYGT 3 cut(s) 85, 226, 587
AgsI TTSAA 5 cut(s) 104, 284, 353, 739, 1198
AjuI GAANNNNNNNTTGG 4 cut(s) 829, 861, 1031, 1063
AluBI AGCT 6 cut(s) 140, 419, 962, 1248, 1298, 1309
AluI AGCT 6 cut(s) 140, 419, 962, 1248, 1298, 1309
Alw21I GWGCWC 2 cut(s) 871, 1311
Alw26I GTCTC 2 cut(s) 178, 706
Alw44I GTGCAC 1 cut(s) 867
AlwI GGATC 3 cut(s) 265, 394, 931
Ama87I CYCGRG 3 cut(s) 175, 1256, 1304
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 867
ApeKI GCWGC 1 cut(s) 474
AseI ATTAAT 1 cut(s) 207
AspLEI GCGC 1 cut(s) 883
AspS9I GGNCC 4 cut(s) 4, 158, 484, 622
AsuHPI GGTGA 3 cut(s) 944, 1010, 1333
AsuII TTCGAA 1 cut(s) 288
AvaI CYCGRG 3 cut(s) 175, 1256, 1304
AvaII GGWCC 3 cut(s) 158, 484, 622
BaeGI GKGCMC 1 cut(s) 871
BanII GRGCYC 3 cut(s) 820, 831, 1311
BarI GAAGNNNNNNTAC 2 cut(s) 1156, 1188
Bbv12I GWGCWC 2 cut(s) 871, 1311
BbvI GCAGC 1 cut(s) 486
BccI CCATC 3 cut(s) 47, 566, 950
BciVI GTATCC 2 cut(s) 314, 1082
BcoDI GTCTC 2 cut(s) 178, 706
BfaI CTAG 3 cut(s) 863, 1055, 1299
BfrI CTTAAG 1 cut(s) 1190
BfuI GTATCC 2 cut(s) 314, 1082
BisI GCNGC 1 cut(s) 475
BlsI GCNGC 1 cut(s) 476
Bme18I GGWCC 3 cut(s) 158, 484, 622
BmeT110I CYCGRG 3 cut(s) 175, 1256, 1304
BmgT120I GGNCC 4 cut(s) 4, 158, 484, 622
BmiI GGNNCC 6 cut(s) 58, 380, 485, 623, 830, 1286
BmrI ACTGGG 1 cut(s) 384
BmsI GCATC 3 cut(s) 847, 1022, 1225
BmuI ACTGGG 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 489
Bpu14I TTCGAA 1 cut(s) 288
BsaAI YACGTR 1 cut(s) 988
BsaJI CCNNGG 8 cut(s) 382, 457, 479, 487, 625, 832, 906, 1288
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bsc4I CCNNNNNNNGG 5 cut(s) 13, 167, 300, 770, 1226
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 4 cut(s) 337, 379, 472, 1045
BseDI CCNNGG 8 cut(s) 382, 457, 479, 487, 625, 832, 906, 1288
BseGI GGATG 2 cut(s) 55, 1240
BseLI CCNNNNNNNGG 5 cut(s) 13, 167, 300, 770, 1226
BseNI ACTGG 4 cut(s) 337, 379, 472, 1045
BseRI GAGGAG 3 cut(s) 426, 891, 954
BseSI GKGCMC 1 cut(s) 871
BseXI GCAGC 1 cut(s) 486
Bsh1236I CGCG 1 cut(s) 589
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 2 cut(s) 871, 1311
BsiHKCI CYCGRG 3 cut(s) 175, 1256, 1304
BsiSI CCGG 2 cut(s) 264, 501
BslFI GGGAC 6 cut(s) 497, 516, 614, 965, 1005, 1287
BslI CCNNNNNNNGG 5 cut(s) 13, 167, 300, 770, 1226
BsmAI GTCTC 2 cut(s) 178, 706
BsmFI GGGAC 6 cut(s) 497, 516, 614, 965, 1005, 1287
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 3 cut(s) 175, 1256, 1304
Bsp119I TTCGAA 1 cut(s) 288
Bsp1286I GDGCHC 4 cut(s) 820, 831, 871, 1311
Bsp143I GATC 3 cut(s) 270, 386, 923
Bsp19I CCATGG 5 cut(s) 382, 479, 487, 832, 1288
BspACI CCGC 3 cut(s) 27, 1133, 1220
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 589
BspLI GGNNCC 6 cut(s) 58, 380, 485, 623, 830, 1286
BspPI GGATC 3 cut(s) 265, 394, 931
BspQI GCTCTTC 1 cut(s) 1056
BspT104I TTCGAA 1 cut(s) 288
BspTI CTTAAG 1 cut(s) 1190
BsrFI RCCGGY 1 cut(s) 500
BsrI ACTGG 4 cut(s) 337, 379, 472, 1045
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 8 cut(s) 382, 457, 479, 487, 625, 832, 906, 1288
BssMI GATC 3 cut(s) 270, 386, 923
BssT1I CCWWGG 7 cut(s) 382, 457, 479, 487, 625, 832, 1288
Bst4CI ACNGT 3 cut(s) 151, 971, 1330
Bst6I CTCTTC 2 cut(s) 1056, 1089
BstAFI CTTAAG 1 cut(s) 1190
BstAPI GCANNNNNTGC 1 cut(s) 1081
BstBAI YACGTR 1 cut(s) 988
BstBI TTCGAA 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 785, 1240
BstDEI CTNAG 1 cut(s) 339
BstDSI CCRYGG 6 cut(s) 382, 479, 487, 832, 906, 1288
BstF5I GGATG 2 cut(s) 55, 1240
BstFNI CGCG 1 cut(s) 589
BstHHI GCGC 1 cut(s) 883
BstKTI GATC 3 cut(s) 273, 389, 926
BstMAI GTCTC 2 cut(s) 178, 706
BstMBI GATC 3 cut(s) 270, 386, 923
BstMWI GCNNNNNNNGC 4 cut(s) 857, 866, 1072, 1081
BstNSI RCATGY 3 cut(s) 89, 230, 607
BstSLI GKGCMC 1 cut(s) 871
BstUI CGCG 1 cut(s) 589
BstV1I GCAGC 1 cut(s) 486
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BsuI GTATCC 2 cut(s) 314, 1082
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 6 cut(s) 382, 479, 487, 832, 906, 1288
BtsCI GGATG 2 cut(s) 55, 1240
BtsIMutI CAGTG 4 cut(s) 330, 364, 372, 1326
Cac8I GCNNGC 2 cut(s) 785, 1240
CfoI GCGC 1 cut(s) 883
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 4 cut(s) 4, 158, 484, 622
CseI GACGC 2 cut(s) 404, 578
Csp6I GTAC 3 cut(s) 89, 465, 1052
CviQI GTAC 3 cut(s) 89, 465, 1052
DdeI CTNAG 1 cut(s) 339
DpnI GATC 3 cut(s) 272, 388, 925
DpnII GATC 3 cut(s) 270, 386, 923
DraIII CACNNNGTG 2 cut(s) 1276, 1347
Eam1104I CTCTTC 2 cut(s) 1056, 1089
EarI CTCTTC 2 cut(s) 1056, 1089
EciI GGCGGA 1 cut(s) 42
Ecl136II GAGCTC 1 cut(s) 1309
Eco130I CCWWGG 7 cut(s) 382, 457, 479, 487, 625, 832, 1288
Eco24I GRGCYC 3 cut(s) 820, 831, 1311
Eco47I GGWCC 3 cut(s) 158, 484, 622
Eco53kI GAGCTC 1 cut(s) 1309
Eco57I CTGAAG 2 cut(s) 330, 1158
Eco88I CYCGRG 3 cut(s) 175, 1256, 1304
EcoICRI GAGCTC 1 cut(s) 1309
EcoT14I CCWWGG 7 cut(s) 382, 457, 479, 487, 625, 832, 1288
EcoT38I GRGCYC 3 cut(s) 820, 831, 1311
ErhI CCWWGG 7 cut(s) 382, 457, 479, 487, 625, 832, 1288
FaqI GGGAC 6 cut(s) 497, 516, 614, 965, 1005, 1287
FauI CCCGC 1 cut(s) 1227
FauNDI CATATG 2 cut(s) 661, 769
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 1 cut(s) 475
FokI GGATG 2 cut(s) 62, 1247
FriOI GRGCYC 3 cut(s) 820, 831, 1311
Fsp4HI GCNGC 1 cut(s) 475
FspBI CTAG 3 cut(s) 863, 1055, 1299
GlaI GCGC 1 cut(s) 882
GluI GCNGC 1 cut(s) 475
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 264, 501
HgaI GACGC 2 cut(s) 404, 578
HhaI GCGC 1 cut(s) 883
Hin6I GCGC 1 cut(s) 881
HinP1I GCGC 1 cut(s) 881
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 4 cut(s) 40, 108, 944, 1169
HpaII CCGG 2 cut(s) 264, 501
HphI GGTGA 3 cut(s) 944, 1010, 1333
Hpy166II GTNNAC 4 cut(s) 345, 559, 652, 869
Hpy188I TCNGA 3 cut(s) 310, 1116, 1317
Hpy188III TCNNGA 6 cut(s) 101, 593, 739, 1198, 1258, 1304
Hpy8I GTNNAC 4 cut(s) 345, 559, 652, 869
Hpy99I CGWCG 1 cut(s) 971
HpyAV CCTTC 4 cut(s) 98, 831, 1255, 1259
HpyCH4III ACNGT 3 cut(s) 151, 971, 1330
HpyCH4IV ACGT 3 cut(s) 197, 775, 987
HpyCH4V TGCA 1 cut(s) 869
HpyF10VI GCNNNNNNNGC 4 cut(s) 857, 866, 1072, 1081
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 3 cut(s) 197, 775, 987
HspAI GCGC 1 cut(s) 881
Kzo9I GATC 3 cut(s) 270, 386, 923
LguI GCTCTTC 1 cut(s) 1056
LmnI GCTCC 4 cut(s) 56, 416, 834, 959
Lsp1109I GCAGC 1 cut(s) 486
LweI GCATC 3 cut(s) 847, 1022, 1225
MaeI CTAG 3 cut(s) 863, 1055, 1299
MaeII ACGT 3 cut(s) 197, 775, 987
MaeIII GTNAC 7 cut(s) 73, 520, 685, 692, 932, 1268, 1324
MalI GATC 3 cut(s) 272, 388, 925
MboI GATC 3 cut(s) 270, 386, 923
MboII GAAGA 3 cut(s) 1073, 1106, 1164
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 4 cut(s) 820, 831, 871, 1311
MluCI AATT 3 cut(s) 113, 162, 284
MluI ACGCGT 1 cut(s) 587
MmeI TCCRAC 2 cut(s) 136, 1086
MseI TTAA 3 cut(s) 207, 444, 1191
MslI CAYNNNNRTG 3 cut(s) 69, 216, 876
MspA1I CMGCKG 1 cut(s) 1133
MspCI CTTAAG 1 cut(s) 1190
MspI CCGG 2 cut(s) 264, 501
MvnI CGCG 1 cut(s) 589
MwoI GCNNNNNNNGC 4 cut(s) 857, 866, 1072, 1081
NcoI CCATGG 5 cut(s) 382, 479, 487, 832, 1288
NdeI CATATG 2 cut(s) 661, 769
NdeII GATC 3 cut(s) 270, 386, 923
NlaIV GGNNCC 6 cut(s) 58, 380, 485, 623, 830, 1286
NmuCI GTSAC 5 cut(s) 685, 692, 932, 1268, 1324
NspI RCATGY 3 cut(s) 89, 230, 607
NspV TTCGAA 1 cut(s) 288
PciI ACATGT 2 cut(s) 85, 226
PciSI GCTCTTC 1 cut(s) 1056
PcsI WCGNNNNNNNCGW 1 cut(s) 1098
PfeI GAWTC 4 cut(s) 40, 108, 944, 1169
PflFI GACNNNGTC 1 cut(s) 698
PflMI CCANNNNNTGG 2 cut(s) 13, 167
PkrI GCNGC 1 cut(s) 476
Ppu21I YACGTR 1 cut(s) 988
PscI ACATGT 2 cut(s) 85, 226
PshBI ATTAAT 1 cut(s) 207
Psp124BI GAGCTC 1 cut(s) 1311
Psp1406I AACGTT 1 cut(s) 197
PspN4I GGNNCC 6 cut(s) 58, 380, 485, 623, 830, 1286
PspPI GGNCC 4 cut(s) 4, 158, 484, 622
PsrI GAACNNNNNNTAC 2 cut(s) 748, 780
PsuI RGATCY 1 cut(s) 386
PsyI GACNNNGTC 1 cut(s) 698
RsaI GTAC 3 cut(s) 90, 466, 1053
RsaNI GTAC 3 cut(s) 89, 465, 1052
RseI CAYNNNNRTG 3 cut(s) 69, 216, 876
SacI GAGCTC 1 cut(s) 1311
SalI GTCGAC 1 cut(s) 557
SapI GCTCTTC 1 cut(s) 1056
SaqAI TTAA 3 cut(s) 207, 444, 1191
SatI GCNGC 1 cut(s) 475
Sau3AI GATC 3 cut(s) 270, 386, 923
Sau96I GGNCC 4 cut(s) 4, 158, 484, 622
SduI GDGCHC 4 cut(s) 820, 831, 871, 1311
SfaNI GCATC 3 cut(s) 847, 1022, 1225
SfuI TTCGAA 1 cut(s) 288
SinI GGWCC 3 cut(s) 158, 484, 622
SmiMI CAYNNNNRTG 3 cut(s) 69, 216, 876
SmlI CTYRAG 1 cut(s) 1190
SmoI CTYRAG 1 cut(s) 1190
Sse9I AATT 3 cut(s) 113, 162, 284
SsiI CCGC 3 cut(s) 27, 1133, 1220
SspMI CTAG 3 cut(s) 863, 1055, 1299
SstI GAGCTC 1 cut(s) 1311
StyI CCWWGG 7 cut(s) 382, 457, 479, 487, 625, 832, 1288
TaaI ACNGT 3 cut(s) 151, 971, 1330
TaiI ACGT 3 cut(s) 200, 778, 990
TaqI TCGA 4 cut(s) 288, 558, 966, 1101
TasI AATT 3 cut(s) 113, 162, 284
TfiI GAWTC 4 cut(s) 40, 108, 944, 1169
Tru1I TTAA 3 cut(s) 207, 444, 1191
Tru9I TTAA 3 cut(s) 207, 444, 1191
TscAI CASTG 4 cut(s) 337, 364, 379, 1333
TseFI GTSAC 5 cut(s) 685, 692, 932, 1268, 1324
TseI GCWGC 1 cut(s) 474
Tsp45I GTSAC 5 cut(s) 685, 692, 932, 1268, 1324
TspDTI ATGAA 5 cut(s) 81, 106, 155, 678, 1240
TspGWI ACGGA 2 cut(s) 923, 951
TspRI CASTG 4 cut(s) 337, 364, 379, 1333
Tth111I GACNNNGTC 1 cut(s) 698
Van91I CCANNNNNTGG 2 cut(s) 13, 167
Vha464I CTTAAG 1 cut(s) 1190
VneI GTGCAC 1 cut(s) 867
VpaK11BI GGWCC 3 cut(s) 158, 484, 622
VspI ATTAAT 1 cut(s) 207
XceI RCATGY 3 cut(s) 89, 230, 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 3 cut(s) 863, 1055, 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.