AT3G16470

jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000646
Physical Location & Seq
Reverse (-)
5595282 .. 5599224
3943 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16470.3

Sequence Viewer

Length: 1356 bp
ATGGCGAAAAAGTTGGAAGCTCAAGGTGGTCGTGGAGGAGAAGAATGGGACGATGGTGGTGCTTACGAAAACGTCAAGAAAGTGTATGTTGGTCAAGGTGATTCTGGTGTTGTTTACGTCAAGTTTGATTACGAGAAAGATGGAAAAATCGTATCACACGAACATGGGAAGCAGACACTACTTGGAACAGAGGAGTTTGTGGTTGATCCAGAAGATTACATAACATCAGTGAAAATTTACTACGAGAAGCTCTTTGGATCACCGATAGAGATCGTAACGGCTCTAATCTTTAAGACATTCAAGGGGAAAACTTCTCAGCCTTTTGGACTAACCTCTGGAGAAGAAGCTGAGCTAGGAGGTGGCAAAATCGTTGGATTTCATGGAAGTTCAAGTGATTTGATCCATTCTGTTGGAGTTTATATAATTCCGTCGACTACACCGCTGACTCCGCCGGTATCAGGTGGTCTGACCAAATTGGAAGCTCAAGGTGGTCGTGGTGGAGATGTTTGGGACGACGGTGGTGCTTATGACAATGTAAAGAAAGTTTATGTTGGACAAGGTGACTCTGGTGTTGTTTATGTCAAGTTTGATTACGAGAAAGATGGTAAGATTGTATCACTTGAACATGGGAAGCAAACACTACTTGGAACAGAGGAGTTTGAGATTGATCCTGAAGACTACATCACCTATGTGAAAGTTTACTACGAGAAACTTTTCGGGTCACCGATAGAGATCGTCACAGCTCTTATATTCAAGACATTCAAAGGAAAAACTTCTCAGCCGTTTGGACTAACCTCTGGAGAAGAAGCTGAGCTAGGAGGCGGCAAAATCGTTGGATTCCATGGAACTTCAAGTGATCTGATCCATTCTCTAGGAGCTTATATTATTCCTTCGTCCACACCATTGACTCCTTCTTCCAATACTATTCCAGCACAAGGTGGAGATGGTGGAGTTGCTTGGGATGATGGTGTTCACGACAGTGTCAAGAAGATATATGTTGGACAAGGTGACTCTTGTGTGACCTATTTCAAAGCTGACTATGAAAAGGCTTCAAAGCCTGTCCTTGGAAGTGATCATGGGAAGAAGACATTGCTTGGAGCAGAGGAGTTTGTGCTTGGACCAGATGAGTATGTCACTGCCGTGTCGGGCTACTATGACAAGATTTTTAGTGTAGATGCCCCGGCAATCGTCTCGCTTAAGTTTAAAACAAACAAGAGAACATCTATCCCGTATGGACTCGAGGGAGGAACTGAATTCGTACTGGAGAAGAAAGACCACAAAATCGTTGGTTTCTATGGACAAGCTGGTGAATATCTTTACAAACTTGGAGTCAATGTTGCGCCCATAGCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin TIR

Protein Analysis

451

Amino Acids

48.5

Weight (kDa)

5.12

Isoelectric Point (pI)

24.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 6 - 140 5.3e-35 Jacalin-like lectin domain
Jacalin PF01419 157 - 290 2.8e-39 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 431
AciI CCGC 3 cut(s) 440, 449, 822
AclWI GGATC 5 cut(s) 200, 265, 394, 662, 856
AcsI RAATTY 2 cut(s) 234, 1253
AcuI CTGAAG 1 cut(s) 693
AdeI CACNNNGTG 1 cut(s) 938
AfaI GTAC 1 cut(s) 1260
AfiI CCNNNNNNNGG 3 cut(s) 458, 935, 1064
AflII CTTAAG 1 cut(s) 1196
AgsI TTSAA 8 cut(s) 301, 390, 623, 754, 763, 852, 1030, 1053
AleI CACNNNNGTG 3 cut(s) 689, 978, 1139
Alw26I GTCTC 1 cut(s) 1195
AlwI GGATC 5 cut(s) 200, 265, 394, 662, 856
Ama87I CYCGRG 1 cut(s) 1238
ApoI RAATTY 2 cut(s) 234, 1253
ArsI GACNNNNNNTTYG 2 cut(s) 1314, 1346
Asp700I GAANNNNTTC 2 cut(s) 713, 772
AspLEI GCGC 1 cut(s) 1342
AspS9I GGNCC 1 cut(s) 1118
AsuC2I CCSGG 1 cut(s) 1181
AsuHPI GGTGA 7 cut(s) 110, 252, 572, 676, 714, 1019, 1319
AvaI CYCGRG 1 cut(s) 1238
AvaII GGWCC 1 cut(s) 1118
BbsI GAAGAC 2 cut(s) 681, 1091
BccI CCATC 5 cut(s) 47, 134, 596, 938, 959
BceAI ACGGC 3 cut(s) 294, 766, 1124
BcgI CGANNNNNNTGC 6 cut(s) 41, 75, 503, 537, 1173, 1207
BclI TGATCA 1 cut(s) 1072
BcnI CCSGG 1 cut(s) 1181
BcoDI GTCTC 1 cut(s) 1195
BfaI CTAG 3 cut(s) 353, 815, 872
BfrI CTTAAG 1 cut(s) 1196
BisI GCNGC 1 cut(s) 823
BlpI GCTNAGC 2 cut(s) 348, 810
BlsI GCNGC 1 cut(s) 824
Bme1390I CCNGG 1 cut(s) 1181
Bme18I GGWCC 1 cut(s) 1118
BmeT110I CYCGRG 1 cut(s) 1238
BmgT120I GGNCC 1 cut(s) 1118
BmrFI CCNGG 1 cut(s) 1181
BmsI GCATC 1 cut(s) 1165
BpiI GAAGAC 2 cut(s) 681, 1091
BpmI CTGGAG 3 cut(s) 357, 819, 1283
Bpu1102I GCTNAGC 2 cut(s) 348, 810
BpuEI CTTGAG 2 cut(s) 6, 468
BpuMI CCSGG 1 cut(s) 1181
BsaBI GATNNNNATC 2 cut(s) 269, 731
BsaJI CCNNGG 3 cut(s) 841, 1063, 1179
BsaXI ACNNNNNCTCC 2 cut(s) 1320, 1350
Bsc4I CCNNNNNNNGG 3 cut(s) 458, 935, 1064
Bse118I RCCGGY 1 cut(s) 451
Bse1I ACTGG 1 cut(s) 1266
Bse3DI GCAATG 1 cut(s) 1088
Bse8I GATNNNNATC 2 cut(s) 269, 731
BseDI CCNNGG 3 cut(s) 841, 1063, 1179
BseGI GGATG 1 cut(s) 967
BseJI GATNNNNATC 2 cut(s) 269, 731
BseLI CCNNNNNNNGG 3 cut(s) 458, 935, 1064
BseMI GCAATG 1 cut(s) 1088
BseMII CTCAG 4 cut(s) 329, 339, 791, 801
BseNI ACTGG 1 cut(s) 1266
BseRI GAGGAG 4 cut(s) 51, 206, 668, 1118
BsiHKCI CYCGRG 1 cut(s) 1238
BsiSI CCGG 2 cut(s) 452, 1181
BslFI GGGAC 2 cut(s) 62, 524
BslI CCNNNNNNNGG 3 cut(s) 458, 935, 1064
BsmAI GTCTC 1 cut(s) 1195
BsmBI CGTCTC 1 cut(s) 1195
BsmFI GGGAC 2 cut(s) 62, 524
BsoBI CYCGRG 1 cut(s) 1238
Bsp143I GATC 9 cut(s) 205, 257, 270, 399, 667, 732, 856, 861, 1072
Bsp1720I GCTNAGC 2 cut(s) 348, 810
Bsp19I CCATGG 1 cut(s) 841
BspACI CCGC 3 cut(s) 440, 449, 822
BspCNI CTCAG 4 cut(s) 328, 340, 790, 802
BspPI GGATC 5 cut(s) 200, 265, 394, 662, 856
BspTI CTTAAG 1 cut(s) 1196
BsrDI GCAATG 1 cut(s) 1088
BsrFI RCCGGY 1 cut(s) 451
BsrI ACTGG 1 cut(s) 1266
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 3 cut(s) 841, 1063, 1179
BssMI GATC 9 cut(s) 205, 257, 270, 399, 667, 732, 856, 861, 1072
BssT1I CCWWGG 2 cut(s) 841, 1063
Bst4CI ACNGT 2 cut(s) 518, 980
BstAFI CTTAAG 1 cut(s) 1196
BstDEI CTNAG 4 cut(s) 315, 348, 777, 810
BstDSI CCRYGG 1 cut(s) 841
BstEII GGTNACC 1 cut(s) 720
BstF5I GGATG 1 cut(s) 967
BstHHI GCGC 1 cut(s) 1342
BstKTI GATC 9 cut(s) 208, 260, 273, 402, 670, 735, 859, 864, 1075
BstMAI GTCTC 1 cut(s) 1195
BstMBI GATC 9 cut(s) 205, 257, 270, 399, 667, 732, 856, 861, 1072
BstMWI GCNNNNNNNGC 2 cut(s) 448, 1346
BstPI GGTNACC 1 cut(s) 720
BstSCI CCNGG 1 cut(s) 1179
BstV2I GAAGAC 2 cut(s) 681, 1091
BstXI CCANNNNNNTGG 1 cut(s) 410
BtgI CCRYGG 1 cut(s) 841
BtsCI GGATG 1 cut(s) 967
BtsI GCAGTG 1 cut(s) 1134
BtsIMutI CAGTG 3 cut(s) 234, 985, 1134
CfoI GCGC 1 cut(s) 1342
Cfr10I RCCGGY 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 1118
Csp6I GTAC 1 cut(s) 1259
CviAII CATG 5 cut(s) 164, 380, 626, 842, 1076
CviQI GTAC 1 cut(s) 1259
DdeI CTNAG 4 cut(s) 315, 348, 777, 810
DpnI GATC 9 cut(s) 207, 259, 272, 401, 669, 734, 858, 863, 1074
DpnII GATC 9 cut(s) 205, 257, 270, 399, 667, 732, 856, 861, 1072
DraI TTTAAA 1 cut(s) 1204
DraIII CACNNNGTG 1 cut(s) 938
EciI GGCGGA 1 cut(s) 438
Eco130I CCWWGG 2 cut(s) 841, 1063
Eco47I GGWCC 1 cut(s) 1118
Eco57I CTGAAG 1 cut(s) 693
Eco88I CYCGRG 1 cut(s) 1238
Eco91I GGTNACC 1 cut(s) 720
EcoO65I GGTNACC 1 cut(s) 720
EcoRI GAATTC 1 cut(s) 1253
EcoT14I CCWWGG 2 cut(s) 841, 1063
ErhI CCWWGG 2 cut(s) 841, 1063
Esp3I CGTCTC 1 cut(s) 1195
FaeI CATG 5 cut(s) 167, 383, 629, 845, 1079
FaqI GGGAC 2 cut(s) 62, 524
FatI CATG 5 cut(s) 163, 379, 625, 841, 1075
FbaI TGATCA 1 cut(s) 1072
FblI GTMKAC 1 cut(s) 431
Fnu4HI GCNGC 1 cut(s) 823
FokI GGATG 1 cut(s) 974
Fsp4HI GCNGC 1 cut(s) 823
FspBI CTAG 3 cut(s) 353, 815, 872
GlaI GCGC 1 cut(s) 1341
GluI GCNGC 1 cut(s) 823
GsuI CTGGAG 3 cut(s) 357, 819, 1283
HapII CCGG 2 cut(s) 452, 1181
HhaI GCGC 1 cut(s) 1342
Hin1II CATG 5 cut(s) 167, 383, 629, 845, 1079
Hin6I GCGC 1 cut(s) 1340
HinP1I GCGC 1 cut(s) 1340
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 8 cut(s) 101, 445, 563, 837, 907, 1010, 1236, 1329
HpaII CCGG 2 cut(s) 452, 1181
HphI GGTGA 7 cut(s) 110, 252, 572, 676, 714, 1019, 1319
Hpy166II GTNNAC 5 cut(s) 115, 432, 700, 897, 973
Hpy188I TCNGA 2 cut(s) 468, 861
Hpy188III TCNNGA 8 cut(s) 76, 209, 336, 671, 754, 798, 974, 985
Hpy8I GTNNAC 5 cut(s) 115, 432, 700, 897, 973
Hpy99I CGWCG 2 cut(s) 433, 518
HpyAV CCTTC 2 cut(s) 900, 921
HpyCH4III ACNGT 2 cut(s) 518, 980
HpyCH4IV ACGT 2 cut(s) 72, 117
HpyF10VI GCNNNNNNNGC 2 cut(s) 448, 1346
HpyF3I CTNAG 4 cut(s) 315, 348, 777, 810
HpySE526I ACGT 2 cut(s) 72, 117
Hsp92II CATG 5 cut(s) 167, 383, 629, 845, 1079
HspAI GCGC 1 cut(s) 1340
Ksp22I TGATCA 1 cut(s) 1072
Kzo9I GATC 9 cut(s) 205, 257, 270, 399, 667, 732, 856, 861, 1072
LmnI GCTCC 2 cut(s) 875, 1097
LweI GCATC 1 cut(s) 1165
MaeI CTAG 3 cut(s) 353, 815, 872
MaeII ACGT 2 cut(s) 72, 117
MaeIII GTNAC 7 cut(s) 274, 560, 720, 736, 1007, 1018, 1132
MalI GATC 9 cut(s) 207, 259, 272, 401, 669, 734, 858, 863, 1074
MboI GATC 9 cut(s) 205, 257, 270, 399, 667, 732, 856, 861, 1072
MluCI AATT 4 cut(s) 234, 423, 473, 1253
MlyI GAGTC 6 cut(s) 439, 557, 901, 1004, 1230, 1338
MmeI TCCRAC 5 cut(s) 352, 391, 532, 814, 979
MroXI GAANNNNTTC 2 cut(s) 713, 772
MseI TTAA 3 cut(s) 291, 1197, 1203
MslI CAYNNNNRTG 4 cut(s) 162, 689, 978, 1139
MspA1I CMGCKG 1 cut(s) 442
MspCI CTTAAG 1 cut(s) 1196
MspI CCGG 2 cut(s) 452, 1181
MspR9I CCNGG 1 cut(s) 1181
MwoI GCNNNNNNNGC 2 cut(s) 448, 1346
NciI CCSGG 1 cut(s) 1181
NcoI CCATGG 1 cut(s) 841
NdeII GATC 9 cut(s) 205, 257, 270, 399, 667, 732, 856, 861, 1072
NlaIII CATG 5 cut(s) 167, 383, 629, 845, 1079
NmuCI GTSAC 6 cut(s) 560, 720, 736, 1007, 1018, 1132
OliI CACNNNNGTG 3 cut(s) 689, 978, 1139
PaeR7I CTCGAG 1 cut(s) 1238
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PdmI GAANNNNTTC 2 cut(s) 713, 772
PfeI GAWTC 2 cut(s) 101, 837
PflFI GACNNNGTC 1 cut(s) 980
PkrI GCNGC 1 cut(s) 824
PleI GAGTC 6 cut(s) 439, 557, 901, 1004, 1230, 1337
PpsI GAGTC 6 cut(s) 439, 557, 901, 1004, 1230, 1337
PspEI GGTNACC 1 cut(s) 720
PspPI GGNCC 1 cut(s) 1118
PspXI VCTCGAGB 1 cut(s) 1238
PsyI GACNNNGTC 1 cut(s) 980
RsaI GTAC 1 cut(s) 1260
RsaNI GTAC 1 cut(s) 1259
RseI CAYNNNNRTG 4 cut(s) 162, 689, 978, 1139
SalI GTCGAC 1 cut(s) 430
SaqAI TTAA 3 cut(s) 291, 1197, 1203
SatI GCNGC 1 cut(s) 823
Sau3AI GATC 9 cut(s) 205, 257, 270, 399, 667, 732, 856, 861, 1072
Sau96I GGNCC 1 cut(s) 1118
SchI GAGTC 6 cut(s) 439, 557, 901, 1004, 1230, 1338
ScrFI CCNGG 1 cut(s) 1181
SfaNI GCATC 1 cut(s) 1165
Sfr274I CTCGAG 1 cut(s) 1238
SinI GGWCC 1 cut(s) 1118
SlaI CTCGAG 1 cut(s) 1238
SmiMI CAYNNNNRTG 4 cut(s) 162, 689, 978, 1139
SmlI CTYRAG 4 cut(s) 21, 483, 1196, 1238
SmoI CTYRAG 4 cut(s) 21, 483, 1196, 1238
Sse9I AATT 4 cut(s) 234, 423, 473, 1253
SsiI CCGC 3 cut(s) 440, 449, 822
SspMI CTAG 3 cut(s) 353, 815, 872
StyD4I CCNGG 1 cut(s) 1179
StyI CCWWGG 2 cut(s) 841, 1063
TaaI ACNGT 2 cut(s) 518, 980
TaiI ACGT 2 cut(s) 75, 120
TaqI TCGA 2 cut(s) 431, 1239
TasI AATT 4 cut(s) 234, 423, 473, 1253
TauI GCSGC 1 cut(s) 825
TfiI GAWTC 2 cut(s) 101, 837
Tru1I TTAA 3 cut(s) 291, 1197, 1203
Tru9I TTAA 3 cut(s) 291, 1197, 1203
TscAI CASTG 3 cut(s) 234, 985, 1141
TseFI GTSAC 6 cut(s) 560, 720, 736, 1007, 1018, 1132
Tsp45I GTSAC 6 cut(s) 560, 720, 736, 1007, 1018, 1132
TspDTI ATGAA 2 cut(s) 368, 1056
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 3 cut(s) 234, 985, 1141
Tth111I GACNNNGTC 1 cut(s) 980
Vha464I CTTAAG 1 cut(s) 1196
VpaK11BI GGWCC 1 cut(s) 1118
XapI RAATTY 2 cut(s) 234, 1253
XcmI CCANNNNNNNNNTGG 1 cut(s) 1283
XhoI CTCGAG 1 cut(s) 1238
XmiI GTMKAC 1 cut(s) 431
XmnI GAANNNNTTC 2 cut(s) 713, 772
XspI CTAG 3 cut(s) 353, 815, 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.