AT3G21380

Jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000646
Physical Location & Seq
Forward (+)
7528181 .. 7530686
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21380.1

Sequence Viewer

Length: 1383 bp
ATGGCGGCCGCAACGATGTCTTGGGACGACGGGAAGCACATGAAGGTGAAGAGGGTGCAGATTACATATGAAGATGTTATCAACTCCATAGAGGCTGAATACGACGGAGACACTCATAACCCTCACCATCACGGCACTCCTGGCAAGAAATCTGACGGCGTGAGCTTGAGCCCAGACGAGTACATAACAGATGTTACTGGCTACTACAAAACTACAGGGGCTGAAGATGCTATAGCAGCATTGGCTTTTAAGACCAACAAAACTGAATATGGTCCTTACGGAAACAAAACAAGGAACCAATTCTCCATTCATGCTCCTAAAGATAATCAGATAGCTGGTTTCCAAGGAATTAGCAGCAATGTTCTCAACTCTATTGACGTCCACTTTGCTCCCTTACCTTCCTCTTCGTCGTCATCGTCCAGTTTGAGTCAAGCCAACAAAGTTGATGCTCAAGGTGGGAAAGGAGGAACATCATGGGACGATGGTGCTCATGATCATGTAAGACGAGTGTACATTGGACAAGGTGATTCTGGTGTCACTTATGTCAAGTTCGAGTACGAGAAGGACGATAAGAAGGAATCACGCGAACACGGAAAGAAGACCCTTCTAGGAGCAGAAGTGTTTGAGGTTGATCCAGACGACTACATCACATCAGTGGAAGTGCAATCTGACAGGATATTTGGGCAAGACACGGAAGTTATCACCTCCTTAATCTTCAAAACATCCAAAGGGAAATTCTCACCGCCCTTTGGACTCGAGGGTTCACAGAAATATGAACTCAAGGACAAGAATGGTGGTAAACTCGTTGGGTTCCATGGGCGAGTAGGCGGCGAACTTCTTAATGCTCTGGGAGCTTATTTCGCTCCTTCATCCGGTCGTGGTACCCCTTCAGCCACTCAGCCACCTGGATCAGCTCAACCAACTGGATCAGCTGGTGCTAAGAAACTAGAAGCAAAAGGTGGTAACGTGGGAAATCCATGGGACGATGGTCCTCATGAAGGTGTGAGGAAAGTGTATATAGGTCAGGGTGATTCTGGTGTATCATACGTCAAGTTTGTCTACGACAAGGACTCTAAGGAGGTCCCCGGAAATGATCATGGGAAAAGAACACTACTTGCACCTGAAGAGTTCCTTCTTGAATATCCAAACGAATATATAACATCGGTGGAGCTTAACTATGACAAAATATTTGGAACTGAAGGTGAAATCATAACGATGCTTAGGTTCACAACGAACAAGCGAACCTCTCCACCTTTTGGACTTGAAGGTGCCAAAAGCGTCCTACTCAAAGAAGACGGCCACAAGATAGTTGGCTTCCATGGCAAAGCGGGTGCTGACATAATTCACCAAGTTGGAGTCCATGTCAAGCCTATTTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin TIR

Protein Analysis

460

Amino Acids

49.72

Weight (kDa)

6.03

Isoelectric Point (pI)

26.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 7 - 128 3.8e-27 Jacalin-like lectin domain
Jacalin PF01419 149 - 286 1.7e-35 Jacalin-like lectin domain
Jacalin PF01419 317 - 454 1.9e-38 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 381
Acc65I GGTACC 1 cut(s) 881
AccB1I GGYRCC 2 cut(s) 881, 1268
AccB7I CCANNNNNTGG 1 cut(s) 1256
AccI GTMKAC 1 cut(s) 1059
AccII CGCG 1 cut(s) 585
AciI CCGC 5 cut(s) 5, 9, 743, 828, 1328
AclWI GGATC 3 cut(s) 626, 916, 934
AcoI YGGCCR 2 cut(s) 6, 1297
AcsI RAATTY 1 cut(s) 734
AcuI CTGAAG 4 cut(s) 243, 873, 1143, 1218
AcyI GRCGYC 1 cut(s) 378
AfaI GTAC 4 cut(s) 182, 512, 557, 883
AfiI CCNNNNNNNGG 4 cut(s) 749, 872, 998, 1256
AgsI TTSAA 3 cut(s) 718, 1139, 1265
AjnI CCWGG 2 cut(s) 139, 904
AjuI GAANNNNNNNTTGG 4 cut(s) 291, 323, 719, 751
AleI CACNNNNGTG 1 cut(s) 653
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
AluBI AGCT 6 cut(s) 165, 335, 854, 914, 932, 1171
AluI AGCT 6 cut(s) 165, 335, 854, 914, 932, 1171
Alw21I GWGCWC 1 cut(s) 490
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 3 cut(s) 626, 916, 934
AlwNI CAGNNNCTG 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 755
AoxI GGCC 2 cut(s) 6, 1297
ApeKI GCWGC 2 cut(s) 236, 354
ApoI RAATTY 1 cut(s) 734
ArsI GACNNNNNNTTYG 6 cut(s) 368, 400, 662, 694, 1172, 1204
Asp700I GAANNNNTTC 1 cut(s) 299
Asp718I GGTACC 1 cut(s) 881
AspS9I GGNCC 3 cut(s) 272, 989, 1081
AsuC2I CCSGG 1 cut(s) 1086
AsuHPI GGTGA 8 cut(s) 58, 116, 536, 694, 732, 1040, 1214, 1337
AvaI CYCGRG 1 cut(s) 755
AvaII GGWCC 3 cut(s) 272, 989, 1081
BanI GGYRCC 2 cut(s) 881, 1268
BanII GRGCYC 1 cut(s) 173
BbsI GAAGAC 2 cut(s) 605, 1299
Bbv12I GWGCWC 1 cut(s) 490
BbvI GCAGC 2 cut(s) 248, 366
BccI CCATC 3 cut(s) 135, 476, 980
BceAI ACGGC 3 cut(s) 148, 172, 1312
BciT130I CCWGG 2 cut(s) 141, 906
BclI TGATCA 2 cut(s) 493, 1093
BcnI CCSGG 1 cut(s) 1086
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 2 cut(s) 608, 947
BfmI CTRYAG 2 cut(s) 213, 231
BisI GCNGC 5 cut(s) 6, 9, 237, 355, 829
BlsI GCNGC 5 cut(s) 7, 10, 238, 356, 830
Bme1390I CCNGG 3 cut(s) 141, 906, 1086
Bme18I GGWCC 3 cut(s) 272, 989, 1081
BmeT110I CYCGRG 1 cut(s) 755
BmgT120I GGNCC 3 cut(s) 272, 989, 1081
BmiI GGNNCC 5 cut(s) 296, 812, 883, 1083, 1270
BmrFI CCNGG 3 cut(s) 141, 906, 1086
BmsI GCATC 3 cut(s) 217, 436, 1206
BoxI GACNNNNGTC 1 cut(s) 987
BpiI GAAGAC 2 cut(s) 605, 1299
Bpu10I CCTNAGC 1 cut(s) 1220
BpuEI CTTGAG 3 cut(s) 187, 435, 764
BpuMI CCSGG 1 cut(s) 1086
BsaHI GRCGYC 1 cut(s) 378
BsaJI CCNNGG 5 cut(s) 343, 814, 977, 1084, 1318
BsaWI WCCGGW 1 cut(s) 872
BsaXI ACNNNNNCTCC 6 cut(s) 287, 317, 603, 633, 1347, 1377
Bsc4I CCNNNNNNNGG 4 cut(s) 749, 872, 998, 1256
Bse1I ACTGG 3 cut(s) 202, 420, 928
Bse3DI GCAATG 1 cut(s) 364
BseBI CCWGG 2 cut(s) 141, 906
BseDI CCNNGG 5 cut(s) 343, 814, 977, 1084, 1318
BseGI GGATG 2 cut(s) 722, 869
BseLI CCNNNNNNNGG 4 cut(s) 749, 872, 998, 1256
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 911
BseNI ACTGG 3 cut(s) 202, 420, 928
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 248, 366
BsgI GTGCAG 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 585
Bsh1285I CGRYCG 2 cut(s) 9, 877
BshFI GGCC 2 cut(s) 8, 1299
BshNI GGYRCC 2 cut(s) 881, 1268
BsiEI CGRYCG 2 cut(s) 9, 877
BsiHKAI GWGCWC 1 cut(s) 490
BsiHKCI CYCGRG 1 cut(s) 755
BsiSI CCGG 2 cut(s) 873, 1086
BslFI GGGAC 4 cut(s) 38, 491, 995, 1067
BslI CCNNNNNNNGG 4 cut(s) 749, 872, 998, 1256
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 4 cut(s) 38, 491, 995, 1067
BsnI GGCC 2 cut(s) 8, 1299
BsoBI CYCGRG 1 cut(s) 755
Bsp1286I GDGCHC 2 cut(s) 173, 490
Bsp1407I TGTACA 1 cut(s) 510
Bsp143I GATC 5 cut(s) 493, 631, 908, 926, 1093
Bsp19I CCATGG 3 cut(s) 814, 977, 1318
BspACI CCGC 5 cut(s) 5, 9, 743, 828, 1328
BspANI GGCC 2 cut(s) 8, 1299
BspCNI CTCAG 1 cut(s) 910
BspFNI CGCG 1 cut(s) 585
BspHI TCATGA 2 cut(s) 490, 994
BspLI GGNNCC 5 cut(s) 296, 812, 883, 1083, 1270
BspPI GGATC 3 cut(s) 626, 916, 934
BspT107I GGYRCC 2 cut(s) 881, 1268
BsrDI GCAATG 1 cut(s) 364
BsrGI TGTACA 1 cut(s) 510
BsrI ACTGG 3 cut(s) 202, 420, 928
BssECI CCNNGG 5 cut(s) 343, 814, 977, 1084, 1318
BssMI GATC 5 cut(s) 493, 631, 908, 926, 1093
BssNI GRCGYC 1 cut(s) 378
BssT1I CCWWGG 4 cut(s) 343, 814, 977, 1318
Bst2UI CCWGG 2 cut(s) 141, 906
Bst6I CTCTTC 3 cut(s) 44, 409, 1119
BstACI GRCGYC 1 cut(s) 378
BstAUI TGTACA 1 cut(s) 510
BstDEI CTNAG 4 cut(s) 897, 939, 1074, 1220
BstDSI CCRYGG 3 cut(s) 814, 977, 1318
BstENI CCTNNNNNAGG 1 cut(s) 996
BstF5I GGATG 2 cut(s) 722, 869
BstFNI CGCG 1 cut(s) 585
BstKTI GATC 5 cut(s) 496, 634, 911, 929, 1096
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 5 cut(s) 493, 631, 908, 926, 1093
BstMCI CGRYCG 2 cut(s) 9, 877
BstMWI GCNNNNNNNGC 7 cut(s) 141, 227, 236, 242, 851, 860, 1320
BstNI CCWGG 2 cut(s) 141, 906
BstPAI GACNNNNGTC 1 cut(s) 987
BstSCI CCNGG 3 cut(s) 139, 904, 1084
BstSFI CTRYAG 2 cut(s) 213, 231
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 2 cut(s) 248, 366
BstV2I GAAGAC 2 cut(s) 605, 1299
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 2 cut(s) 8, 1299
BtgI CCRYGG 3 cut(s) 814, 977, 1318
BtsCI GGATG 2 cut(s) 722, 869
BtsIMutI CAGTG 1 cut(s) 660
CaiI CAGNNNCTG 1 cut(s) 221
CciI TCATGA 2 cut(s) 490, 994
CciNI GCGGCCGC 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 272, 989, 1081
CseI GACGC 1 cut(s) 1267
Csp6I GTAC 4 cut(s) 181, 511, 556, 882
CspCI CAANNNNNGTGG 2 cut(s) 775, 810
CviQI GTAC 4 cut(s) 181, 511, 556, 882
DdeI CTNAG 4 cut(s) 897, 939, 1074, 1220
DpnI GATC 5 cut(s) 495, 633, 910, 928, 1095
DpnII GATC 5 cut(s) 493, 631, 908, 926, 1093
EaeI YGGCCR 2 cut(s) 6, 1297
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 3 cut(s) 44, 409, 1119
EarI CTCTTC 3 cut(s) 44, 409, 1119
EclXI CGGCCG 1 cut(s) 6
Eco130I CCWWGG 4 cut(s) 343, 814, 977, 1318
Eco24I GRGCYC 1 cut(s) 173
Eco47I GGWCC 3 cut(s) 272, 989, 1081
Eco52I CGGCCG 1 cut(s) 6
Eco57I CTGAAG 4 cut(s) 243, 873, 1143, 1218
Eco88I CYCGRG 1 cut(s) 755
EcoNI CCTNNNNNAGG 1 cut(s) 996
EcoO109I RGGNCCY 1 cut(s) 1081
EcoRII CCWGG 2 cut(s) 139, 904
EcoT14I CCWWGG 4 cut(s) 343, 814, 977, 1318
EcoT38I GRGCYC 1 cut(s) 173
ErhI CCWWGG 4 cut(s) 343, 814, 977, 1318
FalI AAGNNNNNCTT 2 cut(s) 1116, 1148
FaqI GGGAC 4 cut(s) 38, 491, 995, 1067
FauI CCCGC 1 cut(s) 1321
FauNDI CATATG 1 cut(s) 67
FbaI TGATCA 2 cut(s) 493, 1093
FblI GTMKAC 1 cut(s) 1059
Fnu4HI GCNGC 5 cut(s) 6, 9, 237, 355, 829
FokI GGATG 2 cut(s) 709, 856
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 5 cut(s) 6, 9, 237, 355, 829
FspBI CTAG 2 cut(s) 608, 947
GluI GCNGC 5 cut(s) 6, 9, 237, 355, 829
HaeIII GGCC 2 cut(s) 8, 1299
HapII CCGG 2 cut(s) 873, 1086
HgaI GACGC 1 cut(s) 1267
Hin1I GRCGYC 1 cut(s) 378
HinfI GANTC 7 cut(s) 427, 527, 578, 753, 1031, 1070, 1356
HpaII CCGG 2 cut(s) 873, 1086
HphI GGTGA 8 cut(s) 58, 116, 536, 694, 732, 1040, 1214, 1337
Hpy166II GTNNAC 6 cut(s) 382, 511, 764, 800, 1060, 1227
Hpy188I TCNGA 3 cut(s) 154, 330, 670
Hpy188III TCNNGA 4 cut(s) 491, 635, 995, 1136
Hpy8I GTNNAC 6 cut(s) 382, 511, 764, 800, 1060, 1227
Hpy99I CGWCG 3 cut(s) 32, 107, 412
HpyCH4IV ACGT 3 cut(s) 378, 966, 1047
HpyCH4V TGCA 3 cut(s) 58, 664, 1118
HpyF10VI GCNNNNNNNGC 7 cut(s) 141, 227, 236, 242, 851, 860, 1320
HpyF3I CTNAG 4 cut(s) 897, 939, 1074, 1220
HpySE526I ACGT 3 cut(s) 378, 966, 1047
Hsp92I GRCGYC 1 cut(s) 378
KpnI GGTACC 1 cut(s) 885
Ksp22I TGATCA 2 cut(s) 493, 1093
Kzo9I GATC 5 cut(s) 493, 631, 908, 926, 1093
LmnI GCTCC 6 cut(s) 319, 394, 611, 851, 868, 1168
Lsp1109I GCAGC 2 cut(s) 248, 366
LweI GCATC 3 cut(s) 217, 436, 1206
MaeI CTAG 2 cut(s) 608, 947
MaeII ACGT 3 cut(s) 378, 966, 1047
MaeIII GTNAC 3 cut(s) 193, 535, 962
MalI GATC 5 cut(s) 495, 633, 910, 928, 1095
MboI GATC 5 cut(s) 493, 631, 908, 926, 1093
MboII GAAGA 8 cut(s) 61, 83, 236, 396, 610, 706, 1136, 1304
MhlI GDGCHC 2 cut(s) 173, 490
MluCI AATT 4 cut(s) 299, 348, 734, 1341
MlyI GAGTC 4 cut(s) 436, 747, 1064, 1365
MmeI TCCRAC 1 cut(s) 1333
MroXI GAANNNNTTC 1 cut(s) 299
MseI TTAA 4 cut(s) 249, 710, 840, 1173
MslI CAYNNNNRTG 5 cut(s) 44, 495, 653, 999, 1214
MspA1I CMGCKG 1 cut(s) 932
MspI CCGG 2 cut(s) 873, 1086
MspR9I CCNGG 3 cut(s) 141, 906, 1086
MvaI CCWGG 2 cut(s) 141, 906
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 7 cut(s) 141, 227, 236, 242, 851, 860, 1320
NciI CCSGG 1 cut(s) 1086
NcoI CCATGG 3 cut(s) 814, 977, 1318
NdeI CATATG 1 cut(s) 67
NdeII GATC 5 cut(s) 493, 631, 908, 926, 1093
NlaIV GGNNCC 5 cut(s) 296, 812, 883, 1083, 1270
NmuCI GTSAC 1 cut(s) 535
NotI GCGGCCGC 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 653
PaeR7I CTCGAG 1 cut(s) 755
PagI TCATGA 2 cut(s) 490, 994
PcsI WCGNNNNNNNCGW 2 cut(s) 413, 564
PdmI GAANNNNTTC 1 cut(s) 299
PfeI GAWTC 3 cut(s) 527, 578, 1031
PflMI CCANNNNNTGG 1 cut(s) 1256
PkrI GCNGC 5 cut(s) 7, 10, 238, 356, 830
PleI GAGTC 4 cut(s) 435, 747, 1064, 1364
PpsI GAGTC 4 cut(s) 435, 747, 1064, 1364
PpuMI RGGWCCY 1 cut(s) 1081
PshAI GACNNNNGTC 1 cut(s) 987
Psp5II RGGWCCY 1 cut(s) 1081
Psp6I CCWGG 2 cut(s) 139, 904
PspGI CCWGG 2 cut(s) 139, 904
PspN4I GGNNCC 5 cut(s) 296, 812, 883, 1083, 1270
PspPI GGNCC 3 cut(s) 272, 989, 1081
PspPPI RGGWCCY 1 cut(s) 1081
PspXI VCTCGAGB 1 cut(s) 755
PstNI CAGNNNCTG 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 932
RsaI GTAC 4 cut(s) 182, 512, 557, 883
RsaNI GTAC 4 cut(s) 181, 511, 556, 882
RseI CAYNNNNRTG 5 cut(s) 44, 495, 653, 999, 1214
SaqAI TTAA 4 cut(s) 249, 710, 840, 1173
SatI GCNGC 5 cut(s) 6, 9, 237, 355, 829
Sau3AI GATC 5 cut(s) 493, 631, 908, 926, 1093
Sau96I GGNCC 3 cut(s) 272, 989, 1081
SchI GAGTC 4 cut(s) 436, 747, 1064, 1365
ScrFI CCNGG 3 cut(s) 141, 906, 1086
SduI GDGCHC 2 cut(s) 173, 490
SfaNI GCATC 3 cut(s) 217, 436, 1206
SfcI CTRYAG 2 cut(s) 213, 231
Sfr274I CTCGAG 1 cut(s) 755
SinI GGWCC 3 cut(s) 272, 989, 1081
SlaI CTCGAG 1 cut(s) 755
SmiMI CAYNNNNRTG 5 cut(s) 44, 495, 653, 999, 1214
SmlI CTYRAG 4 cut(s) 166, 450, 755, 779
SmoI CTYRAG 4 cut(s) 166, 450, 755, 779
Sse9I AATT 4 cut(s) 299, 348, 734, 1341
SsiI CCGC 5 cut(s) 5, 9, 743, 828, 1328
SspI AATATT 1 cut(s) 1188
SspMI CTAG 2 cut(s) 608, 947
StyD4I CCNGG 3 cut(s) 139, 904, 1084
StyI CCWWGG 4 cut(s) 343, 814, 977, 1318
TaiI ACGT 3 cut(s) 381, 969, 1050
TaqI TCGA 2 cut(s) 552, 756
TasI AATT 4 cut(s) 299, 348, 734, 1341
TatI WGTACW 2 cut(s) 180, 510
TauI GCSGC 3 cut(s) 8, 11, 831
TfiI GAWTC 3 cut(s) 527, 578, 1031
Tru1I TTAA 4 cut(s) 249, 710, 840, 1173
Tru9I TTAA 4 cut(s) 249, 710, 840, 1173
TscAI CASTG 1 cut(s) 660
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 2 cut(s) 236, 354
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 6 cut(s) 56, 84, 299, 789, 858, 1011
TspGWI ACGGA 4 cut(s) 120, 294, 606, 707
TspRI CASTG 1 cut(s) 660
Van91I CCANNNNNTGG 1 cut(s) 1256
VpaK11BI GGWCC 3 cut(s) 272, 989, 1081
XagI CCTNNNNNAGG 1 cut(s) 996
XapI RAATTY 1 cut(s) 734
XcmI CCANNNNNNNNNTGG 1 cut(s) 1307
XhoI CTCGAG 1 cut(s) 755
XmiI GTMKAC 1 cut(s) 1059
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 2 cut(s) 608, 947
ZraI GACGTC 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.